Experiment: Sisomicin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1423 and Sama_1424 overlap by 7 nucleotides Sama_1424 and sdhA are separated by 1 nucleotides sdhA and sdhB are separated by 12 nucleotides sdhB and sucA are separated by 192 nucleotides
Sama_1423: Sama_1423 - succinate dehydrogenase, cytochrome b556 subunit (RefSeq), at 1,733,105 to 1,733,500
_1423
Sama_1424: Sama_1424 - succinate dehydrogenase, cytochrome b subunit (RefSeq), at 1,733,494 to 1,733,841
_1424
Sama_1425: sdhA - succinate dehydrogenase flavoprotein subunit (RefSeq), at 1,733,843 to 1,735,609
sdhA
Sama_1426: sdhB - succinate dehydrogenase iron-sulfur subunit (RefSeq), at 1,735,622 to 1,736,329
sdhB
Sama_1427: sucA - 2-oxoglutarate dehydrogenase E1 component (RefSeq), at 1,736,522 to 1,739,344
sucA
Position (kb)
1733
1734
1735
1736 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1732.850 kb on - strand at 1732.878 kb on + strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.884 kb on + strand at 1732.885 kb on - strand at 1732.959 kb on + strand at 1733.012 kb on + strand at 1733.088 kb on + strand at 1735.607 kb on + strand at 1735.607 kb on + strand at 1735.607 kb on + strand at 1736.346 kb on + strand at 1736.346 kb on + strand at 1736.355 kb on + strand at 1736.355 kb on + strand at 1736.355 kb on + strand at 1736.355 kb on + strand at 1736.361 kb on + strand at 1736.363 kb on + strand at 1736.466 kb on + strand at 1736.473 kb on + strand at 1736.473 kb on + strand at 1736.473 kb on + strand at 1736.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml remove 1,732,850 - +0.0 1,732,878 + -1.8 1,732,879 - +2.3 1,732,879 - +1.1 1,732,879 - +0.7 1,732,879 - +1.0 1,732,879 - -1.1 1,732,879 - +1.3 1,732,884 + -1.1 1,732,885 - -0.9 1,732,959 + +1.6 1,733,012 + +4.9 1,733,088 + +4.3 1,735,607 + +2.3 1,735,607 + +4.1 1,735,607 + +0.9 1,736,346 + -0.3 1,736,346 + +0.6 1,736,355 + -1.7 1,736,355 + -0.6 1,736,355 + +0.6 1,736,355 + -0.1 1,736,361 + +1.1 1,736,363 + -1.4 1,736,466 + +0.3 1,736,473 + -0.0 1,736,473 + -0.4 1,736,473 + -0.4 1,736,499 + +2.1
Or see this region's nucleotide sequence