Strain Fitness in Shewanella amazonensis SB2B around Sama_1134

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,382,272	+		Sama_1133	0.43	+0.3
1,382,272	+		Sama_1133	0.43	-0.7
1,382,277	+		Sama_1133	0.44	-2.0
1,382,336	-		Sama_1133	0.48	-0.2
1,382,353	+		Sama_1133	0.49	-0.3
1,382,353	+		Sama_1133	0.49	+0.2
1,382,353	+		Sama_1133	0.49	-1.4
1,382,353	+		Sama_1133	0.49	-0.2
1,382,354	-		Sama_1133	0.49	-0.1
1,382,354	-		Sama_1133	0.49	-0.4
1,382,354	-		Sama_1133	0.49	-1.6
1,382,376	-		Sama_1133	0.50	+0.6
1,382,396	-		Sama_1133	0.52	-1.3
1,382,445	+		Sama_1133	0.55	+0.0
1,382,480	+		Sama_1133	0.57	+0.4
1,382,498	+		Sama_1133	0.59	+0.3
1,382,531	+		Sama_1133	0.61	+0.0
1,382,531	+		Sama_1133	0.61	+0.4
1,382,531	+		Sama_1133	0.61	-0.7
1,382,531	+		Sama_1133	0.61	+1.0
1,382,531	+		Sama_1133	0.61	-0.8
1,382,531	+		Sama_1133	0.61	-0.2
1,382,531	+		Sama_1133	0.61	-1.2
1,382,644	+		Sama_1133	0.69	-2.3
1,382,644	+		Sama_1133	0.69	-0.7
1,382,667	+		Sama_1133	0.70	-1.7
1,382,667	+		Sama_1133	0.70	-0.8
1,382,667	+		Sama_1133	0.70	-0.7
1,382,667	+		Sama_1133	0.70	-0.5
1,382,667	+		Sama_1133	0.70	-1.1
1,382,667	+		Sama_1133	0.70	-0.2
1,382,668	-		Sama_1133	0.70	-1.8
1,382,734	-		Sama_1133	0.75	-0.7
1,382,736	+		Sama_1133	0.75	-0.7
1,382,736	+		Sama_1133	0.75	+0.4
1,382,737	-		Sama_1133	0.75	-1.0
1,382,779	+		Sama_1133	0.78	+1.0
1,382,780	-		Sama_1133	0.78	-1.7
1,382,802	+		Sama_1133	0.80	-0.8
1,382,802	+		Sama_1133	0.80	-0.7
1,382,803	-		Sama_1133	0.80	-0.4
1,382,915	+		Sama_1133	0.87	-0.4
1,382,915	+		Sama_1133	0.87	-0.5
1,382,915	+		Sama_1133	0.87	-0.1
1,382,916	-		Sama_1133	0.87	-2.6
1,382,942	+		Sama_1133	0.89	-0.2
1,382,966	+				+1.3
1,382,966	+				-1.7
1,382,966	+				+1.2
1,382,967	-				-0.3
1,382,982	-				-0.8
1,383,009	-				-0.3
1,383,043	-				+0.4
1,383,059	+				+0.4
1,383,060	-				-0.4
1,383,087	+				+1.9
1,383,088	-				+1.2
1,383,088	-				+0.6
1,383,094	-				+0.2
1,383,210	+				-1.0
1,383,239	-				-0.2
1,383,247	+				-0.4
1,383,387	+	purU	Sama_1134	0.15	-0.6
1,383,390	+	purU	Sama_1134	0.15	-0.1
1,383,390	+	purU	Sama_1134	0.15	-0.6
1,383,414	+	purU	Sama_1134	0.18	-0.1
1,383,434	+	purU	Sama_1134	0.21	+0.9
1,383,434	+	purU	Sama_1134	0.21	+1.1
1,383,434	+	purU	Sama_1134	0.21	-0.3
1,383,435	-	purU	Sama_1134	0.21	+0.5
1,383,498	+	purU	Sama_1134	0.28	+0.3
1,383,499	-	purU	Sama_1134	0.28	+0.7
1,383,499	-	purU	Sama_1134	0.28	+0.7
1,383,513	+	purU	Sama_1134	0.30	-0.4
1,383,513	+	purU	Sama_1134	0.30	+0.1
1,383,563	+	purU	Sama_1134	0.36	-1.0
1,383,563	+	purU	Sama_1134	0.36	+0.2
1,383,563	+	purU	Sama_1134	0.36	+1.6
1,383,563	+	purU	Sama_1134	0.36	+1.6
1,383,564	-	purU	Sama_1134	0.36	-1.6
1,383,564	-	purU	Sama_1134	0.36	+0.6
1,383,577	+	purU	Sama_1134	0.38	+0.5
1,383,577	+	purU	Sama_1134	0.38	-0.4
1,383,577	+	purU	Sama_1134	0.38	-0.4
1,383,577	+	purU	Sama_1134	0.38	+0.8
1,383,578	-	purU	Sama_1134	0.38	-0.4
1,383,578	-	purU	Sama_1134	0.38	-0.3
1,383,578	-	purU	Sama_1134	0.38	-1.8
1,383,580	+	purU	Sama_1134	0.38	+0.5
1,383,581	-	purU	Sama_1134	0.38	+0.7
1,383,600	+	purU	Sama_1134	0.40	+0.6
1,383,600	+	purU	Sama_1134	0.40	+0.6
1,383,619	-	purU	Sama_1134	0.43	+0.7
1,383,622	+	purU	Sama_1134	0.43	+0.8
1,383,627	+	purU	Sama_1134	0.43	-0.2
1,383,670	+	purU	Sama_1134	0.49	+0.1
1,383,670	+	purU	Sama_1134	0.49	+1.2
1,383,671	-	purU	Sama_1134	0.49	+0.9
1,383,671	-	purU	Sama_1134	0.49	+0.0
1,383,671	-	purU	Sama_1134	0.49	+0.9
1,383,671	-	purU	Sama_1134	0.49	-0.1
1,383,737	-	purU	Sama_1134	0.57	-0.7
1,383,748	+	purU	Sama_1134	0.58	+0.8
1,383,768	+	purU	Sama_1134	0.60	+1.2
1,383,822	+	purU	Sama_1134	0.67	+1.6
1,383,822	+	purU	Sama_1134	0.67	-0.4
1,383,822	+	purU	Sama_1134	0.67	+0.4
1,383,822	+	purU	Sama_1134	0.67	+0.0
1,383,823	-	purU	Sama_1134	0.67	-1.2
1,383,849	+	purU	Sama_1134	0.70	-0.4
1,383,896	+	purU	Sama_1134	0.75	+0.4
1,383,925	-	purU	Sama_1134	0.79	-0.2
1,383,945	+	purU	Sama_1134	0.81	-0.0
1,383,945	+	purU	Sama_1134	0.81	+1.0
1,383,945	+	purU	Sama_1134	0.81	+0.6
1,383,946	-	purU	Sama_1134	0.81	-1.3
1,383,982	+	purU	Sama_1134	0.85	-0.3
1,383,982	+	purU	Sama_1134	0.85	+0.7
1,383,982	+	purU	Sama_1134	0.85	+0.3
1,383,982	+	purU	Sama_1134	0.85	+0.1
1,383,983	-	purU	Sama_1134	0.86	-0.4
1,383,983	-	purU	Sama_1134	0.86	-0.1
1,383,983	-	purU	Sama_1134	0.86	+0.9
1,384,147	-				+0.0
1,384,147	-				+0.4
1,384,160	+				-0.2
1,384,164	+				-1.4
1,384,165	-				+1.3
1,384,165	-				-0.1
1,384,165	-				-0.3
1,384,165	-				-1.0
1,384,165	-				-0.1
1,384,165	-				+0.6
1,384,165	-				-1.4
1,384,165	-				-0.6
1,384,208	+		Sama_1135	0.18	-1.0
1,384,208	+		Sama_1135	0.18	+0.2
1,384,208	+		Sama_1135	0.18	-0.2
1,384,208	+		Sama_1135	0.18	-0.5
1,384,208	+		Sama_1135	0.18	-0.5
1,384,209	-		Sama_1135	0.18	-0.2
1,384,209	-		Sama_1135	0.18	-0.5
1,384,209	-		Sama_1135	0.18	-0.9
1,384,214	-		Sama_1135	0.20	+2.9
1,384,279	-		Sama_1135	0.39	-0.4
1,384,279	-		Sama_1135	0.39	-0.5
1,384,387	+		Sama_1135	0.70	+0.8
1,384,387	+		Sama_1135	0.70	+0.2
1,384,388	-		Sama_1135	0.70	+0.9
1,384,391	+		Sama_1135	0.71	-0.7
1,384,392	-		Sama_1135	0.71	-0.6
1,384,457	+		Sama_1135	0.90	+0.8
1,384,457	+		Sama_1135	0.90	-1.8
1,384,458	-				+0.4
1,384,458	-				+0.8
1,384,458	-				+0.0
1,384,484	+				+0.4
1,384,485	-				-0.8
1,384,485	-				+1.2
1,384,510	+				+1.8
1,384,511	-				-1.0
1,384,511	-				-1.3
1,384,511	-				-1.2
1,384,527	+				-0.2
1,384,527	+				+0.2
1,384,527	+				-0.1
1,384,528	-				+2.6
1,384,542	-				+0.7
1,384,603	+				+0.2
1,384,603	+				+0.2
1,384,604	-				+0.9
1,384,604	-				+0.8
1,384,604	-				+1.6
1,384,604	-				-0.1
1,384,604	-				+0.6
1,384,604	-				+1.6
1,384,604	-				-1.4
1,384,687	+				-1.7
1,384,752	-				+0.1
1,384,752	-				+1.6