Strain Fitness in Shewanella amazonensis SB2B around Sama_1110

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,344,992	+				-0.4
1,345,001	+				-0.7
1,345,001	+				+0.3
1,345,001	+				+0.0
1,345,002	-				+0.2
1,345,013	+				-0.3
1,345,013	+				-0.7
1,345,013	+				+0.5
1,345,013	+				+0.0
1,345,013	+				+1.6
1,345,013	+				-0.7
1,345,013	+				+0.0
1,345,013	+				-0.4
1,345,014	-				+0.0
1,345,014	-				-0.2
1,345,014	-				-0.4
1,345,014	-				+0.1
1,345,014	-				+0.2
1,345,014	-				-0.1
1,345,029	-				+0.3
1,345,043	+				-1.0
1,345,044	-				+1.4
1,345,068	+				-0.1
1,345,068	+				+0.6
1,345,068	+				-1.4
1,345,068	+				+1.6
1,345,068	+				+0.0
1,345,068	+				-0.1
1,345,069	-				-0.1
1,345,069	-				-0.7
1,345,069	-				-0.5
1,345,069	-				+0.2
1,345,069	-				+1.6
1,345,077	+				+0.0
1,345,077	+				-0.3
1,345,077	+				+0.0
1,345,077	+				-0.4
1,345,077	+				+0.4
1,345,078	-				+1.3
1,345,078	-				-0.7
1,345,078	-				-0.2
1,345,081	+				+0.0
1,345,081	+				+0.4
1,345,082	-				+0.0
1,345,082	-				-0.2
1,345,082	-				-0.5
1,345,082	-				+0.1
1,345,172	-				-0.2
1,345,189	+				-0.5
1,345,219	-				+0.2
1,345,229	+				-1.4
1,345,230	-				+0.1
1,345,230	-				-0.2
1,345,233	-				-0.4
1,345,233	-				-0.2
1,345,277	-				+1.5
1,345,308	+				+1.3
1,345,308	+				-0.1
1,345,366	+				+0.8
1,345,367	-				-0.8
1,345,367	-				+0.4
1,345,367	-				+0.6
1,345,384	+				+0.3
1,345,387	-				-0.3
1,345,387	-				-1.2
1,345,399	+				-0.9
1,345,428	-				+1.9
1,345,441	+				+1.8
1,345,442	-				-0.6
1,345,455	+				-1.7
1,345,455	+				+0.6
1,345,471	+				-1.0
1,345,471	+				+0.8
1,345,471	+				-1.1
1,345,471	+				-0.6
1,345,472	-				+0.4
1,345,472	-				-1.5
1,345,629	+		Sama_1109	0.41	-0.0
1,345,629	+		Sama_1109	0.41	-1.0
1,345,629	+		Sama_1109	0.41	+0.9
1,345,630	-		Sama_1109	0.42	-1.0
1,345,630	-		Sama_1109	0.42	-0.6
1,345,656	+		Sama_1109	0.50	-0.5
1,345,679	-		Sama_1109	0.56	-0.4
1,345,679	-		Sama_1109	0.56	+0.7
1,345,754	-		Sama_1109	0.79	-0.4
1,345,770	+		Sama_1109	0.84	-0.5
1,345,771	-		Sama_1109	0.84	-0.3
1,345,771	-		Sama_1109	0.84	-0.4
1,345,771	-		Sama_1109	0.84	-0.3
1,345,771	-		Sama_1109	0.84	-0.5
1,345,771	-		Sama_1109	0.84	+0.1
1,345,804	+				+0.6
1,345,852	+				+0.5
1,345,852	+				-0.2
1,345,853	-				+0.4
1,345,855	-				+1.7
1,345,888	+				+0.6
1,345,889	-				-0.9
1,345,889	-				-0.4
1,345,891	-				-0.3
1,345,891	-				-1.0
1,345,891	-				-0.1
1,345,891	-				-1.1
1,345,939	+				-1.1
1,345,939	+				+0.4
1,345,940	-				-0.7
1,345,940	-				+1.2
1,345,940	-				+1.3
1,345,940	-				-0.8
1,346,041	+		Sama_1110	0.17	-0.5
1,346,042	-		Sama_1110	0.17	-1.3
1,346,061	-		Sama_1110	0.23	-0.4
1,346,094	+		Sama_1110	0.31	+0.6
1,346,094	+		Sama_1110	0.31	+0.6
1,346,095	-		Sama_1110	0.32	-0.7
1,346,099	-		Sama_1110	0.33	-1.2
1,346,099	-		Sama_1110	0.33	+0.6
1,346,130	+		Sama_1110	0.41	+0.0
1,346,130	+		Sama_1110	0.41	-2.0
1,346,130	+		Sama_1110	0.41	+2.0
1,346,131	-		Sama_1110	0.41	+0.0
1,346,135	+		Sama_1110	0.42	-0.5
1,346,135	+		Sama_1110	0.42	-0.8
1,346,135	+		Sama_1110	0.42	+0.9
1,346,193	+		Sama_1110	0.58	-1.4
1,346,194	-		Sama_1110	0.58	-0.4
1,346,266	+		Sama_1110	0.78	+0.4
1,346,267	-		Sama_1110	0.78	+0.2
1,346,311	-				-0.8
1,346,316	+				+0.6
1,346,316	+				+2.0
1,346,380	+				-0.0
1,346,380	+				+0.2
1,346,380	+				-1.4
1,346,380	+				+0.3
1,346,380	+				-0.4
1,346,380	+				+0.4
1,346,381	-				+0.4
1,346,381	-				-0.4
1,346,381	-				+0.4
1,346,381	-				-0.2
1,346,381	-				-0.2
1,346,384	+				-0.8
1,346,384	+				-2.5
1,346,384	+				-0.1
1,346,384	+				+1.1
1,346,384	+				+0.1
1,346,384	+				-1.0
1,346,384	+				+0.2
1,346,385	-				+0.5
1,346,385	-				+0.5
1,346,385	-				-0.9
1,346,385	-				-1.8
1,346,386	+				-0.5
1,346,386	+				-0.0
1,346,386	+				-0.2
1,346,387	-				-1.1
1,346,426	+				-1.5
1,346,427	-				+1.6
1,346,436	+				+0.2
1,346,438	+				-0.3
1,346,438	+				+0.5
1,346,438	+				+1.0
1,346,438	+				+1.2
1,346,438	+				-1.0
1,346,438	+				-1.3
1,346,438	+				-1.2
1,346,439	-				-1.4
1,346,439	-				-0.4
1,346,439	-				+0.6
1,346,495	+				-1.2
1,346,497	+				-2.0
1,346,497	+				-2.0
1,346,497	+				-0.2
1,346,498	-				-0.8
1,346,498	-				+1.2
1,346,498	-				+1.3
1,346,498	-				+0.5
1,346,505	+				-1.0
1,346,506	-				-0.4
1,346,546	-				-0.8
1,346,663	+				-0.7
1,346,663	+				-0.1
1,346,663	+				-0.4
1,346,663	+				-0.1
1,346,663	+				+0.5
1,346,664	-				-1.5
1,346,664	-				-1.4
1,346,664	-				-0.4
1,346,678	-				-0.8
1,346,688	-				-0.4
1,346,811	-				-0.1
1,346,811	-				-0.4
1,346,811	-				+0.2
1,346,892	+				-0.5
1,346,892	+				-0.5
1,346,893	-				+0.2
1,346,962	+				-2.1
1,346,963	-				-0.5
1,346,966	+				-1.0
1,346,969	+				+0.5
1,346,973	+				+1.3
1,346,974	-				-0.6
1,346,986	-				-0.5
1,347,008	+				+2.3
1,347,010	+				-0.8
1,347,015	+				+0.3
1,347,167	+				+0.4
1,347,240	-		Sama_1111	0.11	-0.2
1,347,263	+		Sama_1111	0.12	+1.5
1,347,279	+		Sama_1111	0.13	-0.3
1,347,280	-		Sama_1111	0.13	-0.4
1,347,280	-		Sama_1111	0.13	-0.6
1,347,280	-		Sama_1111	0.13	+1.3