Strain Fitness in Shewanella amazonensis SB2B around Sama_0908

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,096,213	+		Sama_0907	0.33	+0.1
1,096,213	+		Sama_0907	0.33	+0.5
1,096,213	+		Sama_0907	0.33	-0.5
1,096,213	+		Sama_0907	0.33	+1.0
1,096,214	-		Sama_0907	0.33	-2.1
1,096,214	-		Sama_0907	0.33	-1.5
1,096,214	-		Sama_0907	0.33	-1.8
1,096,287	+		Sama_0907	0.39	-1.0
1,096,287	+		Sama_0907	0.39	+0.0
1,096,288	-		Sama_0907	0.39	-0.9
1,096,288	-		Sama_0907	0.39	+0.1
1,096,290	+		Sama_0907	0.39	-1.5
1,096,422	+		Sama_0907	0.50	-0.1
1,096,453	+		Sama_0907	0.52	-0.5
1,096,763	+		Sama_0907	0.76	-0.4
1,096,763	+		Sama_0907	0.76	+0.6
1,096,820	-		Sama_0907	0.80	+0.2
1,096,820	-		Sama_0907	0.80	+0.1
1,096,860	+		Sama_0907	0.84	+0.6
1,096,861	-		Sama_0907	0.84	-0.9
1,096,871	+		Sama_0907	0.84	-0.7
1,096,871	+		Sama_0907	0.84	+0.7
1,096,872	-		Sama_0907	0.85	+0.8
1,096,872	-		Sama_0907	0.85	+0.1
1,096,872	-		Sama_0907	0.85	-1.8
1,097,077	+				-0.8
1,097,077	+				+0.1
1,097,077	+				-0.3
1,097,078	-				-0.2
1,097,078	-				+0.1
1,097,078	-				-0.9
1,097,114	+				-0.7
1,097,140	-				+0.9
1,097,167	+				-0.6
1,097,168	-				-0.3
1,097,168	-				-0.3
1,097,168	-				-0.3
1,097,174	+				-0.8
1,097,174	+				-0.1
1,097,174	+				-0.7
1,097,175	-				-0.5
1,097,175	-				-0.4
1,097,175	-				-0.2
1,097,178	+				-0.4
1,097,179	-				-1.7
1,097,182	+				+0.3
1,097,182	+				-0.7
1,097,182	+				-2.3
1,097,255	-				-1.2
1,097,255	-				-1.0
1,097,255	-				-1.0
1,097,285	+				-0.1
1,097,323	+				+0.3
1,097,323	+				-0.5
1,097,324	-				-0.5
1,097,324	-				+0.0
1,097,324	-				+0.3
1,097,342	-				-0.7
1,097,380	+				-3.8
1,097,381	-				-0.7
1,097,381	-				-0.7
1,097,381	-				-0.8
1,097,381	-				-0.4
1,097,381	-				-0.3
1,097,408	+				+0.3
1,097,408	+				+0.6
1,097,409	-				-0.4
1,097,409	-				+0.0
1,097,409	-				-0.1
1,097,522	+		Sama_0908	0.15	-0.2
1,097,522	+		Sama_0908	0.15	-0.6
1,097,522	+		Sama_0908	0.15	-0.4
1,097,522	+		Sama_0908	0.15	+1.1
1,097,522	+		Sama_0908	0.15	-1.2
1,097,522	+		Sama_0908	0.15	+0.7
1,097,522	+		Sama_0908	0.15	-1.1
1,097,523	-		Sama_0908	0.15	-0.7
1,097,523	-		Sama_0908	0.15	+1.1
1,097,523	-		Sama_0908	0.15	-1.4
1,097,523	-		Sama_0908	0.15	+0.3
1,097,523	-		Sama_0908	0.15	-0.1
1,097,573	+		Sama_0908	0.18	-0.3
1,097,574	-		Sama_0908	0.18	-0.6
1,097,574	-		Sama_0908	0.18	-2.1
1,097,579	+		Sama_0908	0.18	-0.2
1,097,579	+		Sama_0908	0.18	-1.2
1,097,579	+		Sama_0908	0.18	+0.1
1,097,579	+		Sama_0908	0.18	+1.0
1,097,579	+		Sama_0908	0.18	-0.2
1,097,580	-		Sama_0908	0.18	+1.2
1,097,580	-		Sama_0908	0.18	-0.5
1,097,580	-		Sama_0908	0.18	+0.1
1,097,580	-		Sama_0908	0.18	+0.3
1,097,580	-		Sama_0908	0.18	-1.5
1,097,631	-		Sama_0908	0.21	-0.6
1,097,645	-		Sama_0908	0.21	+0.3
1,097,702	+		Sama_0908	0.24	+0.0
1,097,704	+		Sama_0908	0.24	+0.3
1,097,704	+		Sama_0908	0.24	+0.8
1,097,704	+		Sama_0908	0.24	+1.2
1,097,704	+		Sama_0908	0.24	+0.3
1,097,704	+		Sama_0908	0.24	-0.6
1,097,704	+		Sama_0908	0.24	-0.1
1,097,704	+		Sama_0908	0.24	+0.3
1,097,704	+		Sama_0908	0.24	+0.4
1,097,704	+		Sama_0908	0.24	+0.2
1,097,704	+		Sama_0908	0.24	-0.2
1,097,704	+		Sama_0908	0.24	-1.1
1,097,704	+		Sama_0908	0.24	-0.4
1,097,705	-		Sama_0908	0.24	+0.4
1,097,705	-		Sama_0908	0.24	-0.7
1,097,705	-		Sama_0908	0.24	+2.1
1,097,705	-		Sama_0908	0.24	-0.2
1,097,705	-		Sama_0908	0.24	+0.4
1,097,705	-		Sama_0908	0.24	-1.0
1,097,705	-		Sama_0908	0.24	+0.1
1,097,705	-		Sama_0908	0.24	-0.5
1,097,705	-		Sama_0908	0.24	+0.3
1,097,705	-		Sama_0908	0.24	-0.8
1,097,705	-		Sama_0908	0.24	+1.6
1,097,754	-		Sama_0908	0.27	+1.3
1,097,754	-		Sama_0908	0.27	+0.3
1,097,754	-		Sama_0908	0.27	+0.6
1,097,796	+		Sama_0908	0.29	-0.7
1,097,796	+		Sama_0908	0.29	-0.2
1,097,796	+		Sama_0908	0.29	+0.5
1,097,797	-		Sama_0908	0.29	-0.5
1,097,797	-		Sama_0908	0.29	+0.5
1,097,854	+		Sama_0908	0.32	+0.7
1,097,854	+		Sama_0908	0.32	-0.3
1,097,854	+		Sama_0908	0.32	-0.2
1,097,854	+		Sama_0908	0.32	-1.7
1,097,854	+		Sama_0908	0.32	+1.2
1,097,864	+		Sama_0908	0.32	+0.3
1,097,876	+		Sama_0908	0.33	+1.6
1,097,877	-		Sama_0908	0.33	-0.1
1,097,913	+		Sama_0908	0.35	-0.7
1,097,914	-		Sama_0908	0.35	-0.3
1,097,955	+		Sama_0908	0.37	+0.2
1,097,955	+		Sama_0908	0.37	-0.5
1,097,955	+		Sama_0908	0.37	-2.2
1,097,955	+		Sama_0908	0.37	-0.5
1,097,956	-		Sama_0908	0.37	-1.7
1,097,956	-		Sama_0908	0.37	-0.5
1,097,960	+		Sama_0908	0.37	+0.6
1,097,961	-		Sama_0908	0.37	+1.5
1,097,961	-		Sama_0908	0.37	+0.0
1,097,989	+		Sama_0908	0.38	-0.3
1,097,990	-		Sama_0908	0.38	-0.1
1,097,995	+		Sama_0908	0.39	+0.6
1,097,995	+		Sama_0908	0.39	+0.6
1,097,995	+		Sama_0908	0.39	+0.4
1,097,995	+		Sama_0908	0.39	+0.6
1,097,995	+		Sama_0908	0.39	+1.0
1,097,995	+		Sama_0908	0.39	+0.6
1,097,995	+		Sama_0908	0.39	-0.5
1,097,995	+		Sama_0908	0.39	+0.9
1,097,995	+		Sama_0908	0.39	+0.8
1,097,995	+		Sama_0908	0.39	-0.9
1,097,996	-		Sama_0908	0.39	+0.5
1,097,996	-		Sama_0908	0.39	-1.0
1,097,996	-		Sama_0908	0.39	-1.4
1,097,996	-		Sama_0908	0.39	-0.3
1,097,996	-		Sama_0908	0.39	-0.7
1,097,996	-		Sama_0908	0.39	+0.9
1,098,020	+		Sama_0908	0.40	-0.1
1,098,023	+		Sama_0908	0.40	+0.5
1,098,023	+		Sama_0908	0.40	-1.5
1,098,024	-		Sama_0908	0.40	+0.5
1,098,036	+		Sama_0908	0.41	+1.6
1,098,036	+		Sama_0908	0.41	+0.2
1,098,036	+		Sama_0908	0.41	-1.3
1,098,037	-		Sama_0908	0.41	+0.9
1,098,044	+		Sama_0908	0.41	+0.2
1,098,044	+		Sama_0908	0.41	+0.6
1,098,044	+		Sama_0908	0.41	-0.6
1,098,057	+		Sama_0908	0.42	+0.3
1,098,057	+		Sama_0908	0.42	-0.7
1,098,057	+		Sama_0908	0.42	-0.4
1,098,057	+		Sama_0908	0.42	+0.4
1,098,057	+		Sama_0908	0.42	+1.9
1,098,059	+		Sama_0908	0.42	+0.8
1,098,113	+		Sama_0908	0.44	+0.2
1,098,155	+		Sama_0908	0.46	+0.4
1,098,155	+		Sama_0908	0.46	+0.1
1,098,155	+		Sama_0908	0.46	+0.4
1,098,155	+		Sama_0908	0.46	+1.8
1,098,155	+		Sama_0908	0.46	-0.1
1,098,155	+		Sama_0908	0.46	-0.7
1,098,155	+		Sama_0908	0.46	-1.5
1,098,155	+		Sama_0908	0.46	-2.6
1,098,156	-		Sama_0908	0.46	-1.9
1,098,156	-		Sama_0908	0.46	+0.0
1,098,156	-		Sama_0908	0.46	-1.4
1,098,190	+		Sama_0908	0.48	+0.3
1,098,190	+		Sama_0908	0.48	+0.4
1,098,190	+		Sama_0908	0.48	-0.4
1,098,191	-		Sama_0908	0.48	-0.0
1,098,196	+		Sama_0908	0.48	-0.4
1,098,197	-		Sama_0908	0.48	-0.3
1,098,242	+		Sama_0908	0.51	-0.3
1,098,243	-		Sama_0908	0.51	+1.2
1,098,281	-		Sama_0908	0.53	-1.3
1,098,283	+		Sama_0908	0.53	+0.8
1,098,308	+		Sama_0908	0.54	+0.0
1,098,340	+		Sama_0908	0.55	+0.0
1,098,340	+		Sama_0908	0.55	-1.0
1,098,340	+		Sama_0908	0.55	+0.2
1,098,340	+		Sama_0908	0.55	+0.1
1,098,340	+		Sama_0908	0.55	+0.4
1,098,341	-		Sama_0908	0.55	+0.4
1,098,349	+		Sama_0908	0.56	+0.6
1,098,349	+		Sama_0908	0.56	+0.5
1,098,349	+		Sama_0908	0.56	-0.2
1,098,350	-		Sama_0908	0.56	-0.1
1,098,350	-		Sama_0908	0.56	-0.5
1,098,413	+		Sama_0908	0.59	-0.5
1,098,434	+		Sama_0908	0.60	-0.3
1,098,515	-		Sama_0908	0.64	+1.0
1,098,581	+		Sama_0908	0.67	-0.7
1,098,581	+		Sama_0908	0.67	+0.0
1,098,582	-		Sama_0908	0.67	+0.2
1,098,588	+		Sama_0908	0.68	-0.2
1,098,588	+		Sama_0908	0.68	+0.7
1,098,588	+		Sama_0908	0.68	+1.0
1,098,588	+		Sama_0908	0.68	+0.1
1,098,589	-		Sama_0908	0.68	+0.8
1,098,589	-		Sama_0908	0.68	-0.8
1,098,589	-		Sama_0908	0.68	+0.6
1,098,589	-		Sama_0908	0.68	+0.0
1,098,589	-		Sama_0908	0.68	+0.0
1,098,589	-		Sama_0908	0.68	+1.1
1,098,668	+		Sama_0908	0.71	+0.2
1,098,677	+		Sama_0908	0.72	+0.5
1,098,677	+		Sama_0908	0.72	-1.3
1,098,677	+		Sama_0908	0.72	+0.5
1,098,677	+		Sama_0908	0.72	-1.3
1,098,714	+		Sama_0908	0.74	+0.7
1,098,714	+		Sama_0908	0.74	+0.8
1,098,715	-		Sama_0908	0.74	+0.0
1,098,715	-		Sama_0908	0.74	+0.0
1,098,715	-		Sama_0908	0.74	+0.2
1,098,715	-		Sama_0908	0.74	-0.1
1,098,725	-		Sama_0908	0.74	+0.0
1,098,741	+		Sama_0908	0.75	-1.1
1,098,741	+		Sama_0908	0.75	+0.6
1,098,802	+		Sama_0908	0.78	-0.3
1,098,802	+		Sama_0908	0.78	-1.1
1,098,867	-		Sama_0908	0.81	-0.2
1,098,867	-		Sama_0908	0.81	-1.0
1,098,889	+		Sama_0908	0.82	-0.4
1,098,974	+		Sama_0908	0.86	-0.4
1,098,975	-		Sama_0908	0.86	+0.9
1,098,998	+		Sama_0908	0.88	-0.1
1,098,998	+		Sama_0908	0.88	-1.9
1,098,998	+		Sama_0908	0.88	+0.2
1,098,998	+		Sama_0908	0.88	-0.4
1,098,999	-		Sama_0908	0.88	-0.5
1,098,999	-		Sama_0908	0.88	-1.5
1,098,999	-		Sama_0908	0.88	+0.1
1,099,033	+		Sama_0908	0.89	+0.0
1,099,033	+		Sama_0908	0.89	+0.2
1,099,034	-		Sama_0908	0.89	+0.0
1,099,034	-		Sama_0908	0.89	-0.4
1,099,053	-				-0.6
1,099,060	-				+1.0
1,099,081	+				+0.9
1,099,081	+				-1.0
1,099,122	-				-2.8
1,099,130	+				+0.0
1,099,146	+				+0.4
1,099,175	+				-0.4
1,099,175	+				-0.4
1,099,175	+				-0.9
1,099,175	+				+0.6
1,099,176	-				-0.9
1,099,248	+				-0.7
1,099,248	+				-2.2
1,099,249	-				+0.4
1,099,249	-				+0.3
1,099,297	+				-0.2
1,099,297	+				+0.1
1,099,298	-				-0.3
1,099,298	-				+0.4
1,099,319	+				+0.0
1,099,319	+				-1.5
1,099,319	+				-0.9
1,099,319	+				-0.5
1,099,320	-				-0.1
1,099,333	+				-0.5
1,099,366	+		Sama_0909	0.10	+0.0
1,099,377	+		Sama_0909	0.11	+0.2
1,099,377	+		Sama_0909	0.11	+0.3
1,099,377	+		Sama_0909	0.11	+0.7
1,099,377	+		Sama_0909	0.11	+1.0
1,099,377	+		Sama_0909	0.11	-1.1
1,099,378	-		Sama_0909	0.11	-1.1
1,099,378	-		Sama_0909	0.11	-0.4
1,099,472	+		Sama_0909	0.20	-0.7
1,099,472	+		Sama_0909	0.20	+1.1
1,099,473	-		Sama_0909	0.20	+0.5
1,099,473	-		Sama_0909	0.20	-0.9
1,099,486	-		Sama_0909	0.21	-0.2
1,099,507	-		Sama_0909	0.23	+0.5
1,099,531	+		Sama_0909	0.25	+1.1
1,099,612	+		Sama_0909	0.33	+0.1
1,099,613	-		Sama_0909	0.33	-1.6
1,099,613	-		Sama_0909	0.33	+0.6
1,099,744	+		Sama_0909	0.45	+1.1
1,099,745	-		Sama_0909	0.45	+1.2
1,099,832	-		Sama_0909	0.53	+0.0
1,099,907	+		Sama_0909	0.60	+0.3
1,099,907	+		Sama_0909	0.60	+1.8
1,099,908	-		Sama_0909	0.60	+1.1
1,099,908	-		Sama_0909	0.60	-0.1
1,099,969	-		Sama_0909	0.65	-0.1
1,099,993	+		Sama_0909	0.67	-0.5
1,099,993	+		Sama_0909	0.67	-0.4
1,099,994	-		Sama_0909	0.67	-0.1
1,100,046	+		Sama_0909	0.72	-0.6
1,100,046	+		Sama_0909	0.72	+0.5
1,100,047	-		Sama_0909	0.72	+0.4
1,100,047	-		Sama_0909	0.72	+1.0
1,100,049	+		Sama_0909	0.73	-0.3
1,100,049	+		Sama_0909	0.73	+0.9
1,100,049	+		Sama_0909	0.73	-0.2
1,100,049	+		Sama_0909	0.73	+0.1
1,100,050	-		Sama_0909	0.73	-0.7
1,100,050	-		Sama_0909	0.73	+0.8
1,100,055	+		Sama_0909	0.73	-0.4
1,100,084	+		Sama_0909	0.76	-0.8
1,100,085	-		Sama_0909	0.76	-1.1
1,100,201	+		Sama_0909	0.86	-0.4
1,100,201	+		Sama_0909	0.86	+0.2
1,100,201	+		Sama_0909	0.86	+0.8
1,100,201	+		Sama_0909	0.86	-0.1
1,100,201	+		Sama_0909	0.86	+1.2
1,100,201	+		Sama_0909	0.86	-0.3
1,100,201	+		Sama_0909	0.86	-0.7
1,100,201	+		Sama_0909	0.86	-0.3
1,100,201	+		Sama_0909	0.86	+0.1
1,100,201	+		Sama_0909	0.86	+0.5
1,100,202	-		Sama_0909	0.86	-1.0
1,100,202	-		Sama_0909	0.86	-1.5
1,100,202	-		Sama_0909	0.86	+1.6
1,100,202	-		Sama_0909	0.86	+1.1
1,100,202	-		Sama_0909	0.86	-0.2