Strain Fitness in Shewanella amazonensis SB2B around Sama_0895

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,081,741	+	tyrA	Sama_0894	0.28	+0.0
1,081,741	+	tyrA	Sama_0894	0.28	+0.0
1,081,741	+	tyrA	Sama_0894	0.28	+0.0
1,081,741	+	tyrA	Sama_0894	0.28	-2.1
1,081,741	+	tyrA	Sama_0894	0.28	+0.3
1,081,741	+	tyrA	Sama_0894	0.28	+0.0
1,081,741	+	tyrA	Sama_0894	0.28	-0.6
1,081,741	+	tyrA	Sama_0894	0.28	-0.1
1,081,742	-	tyrA	Sama_0894	0.28	-1.2
1,081,797	+	tyrA	Sama_0894	0.33	-0.2
1,081,867	+	tyrA	Sama_0894	0.39	-0.5
1,081,940	+	tyrA	Sama_0894	0.46	-0.5
1,081,940	+	tyrA	Sama_0894	0.46	+0.8
1,081,940	+	tyrA	Sama_0894	0.46	+0.3
1,081,941	-	tyrA	Sama_0894	0.46	+0.2
1,081,941	-	tyrA	Sama_0894	0.46	+0.8
1,082,071	+	tyrA	Sama_0894	0.57	+1.3
1,082,171	+	tyrA	Sama_0894	0.66	+0.7
1,082,195	+	tyrA	Sama_0894	0.68	+0.1
1,082,195	+	tyrA	Sama_0894	0.68	+1.3
1,082,196	-	tyrA	Sama_0894	0.68	+1.0
1,082,221	-	tyrA	Sama_0894	0.70	-0.7
1,082,252	+	tyrA	Sama_0894	0.73	-0.4
1,082,254	+	tyrA	Sama_0894	0.73	+0.6
1,082,254	+	tyrA	Sama_0894	0.73	-0.4
1,082,254	+	tyrA	Sama_0894	0.73	-0.7
1,082,254	+	tyrA	Sama_0894	0.73	+0.1
1,082,254	+	tyrA	Sama_0894	0.73	+0.7
1,082,254	+	tyrA	Sama_0894	0.73	+0.6
1,082,254	+	tyrA	Sama_0894	0.73	-0.1
1,082,255	-	tyrA	Sama_0894	0.73	+0.3
1,082,282	+	tyrA	Sama_0894	0.76	-0.6
1,082,283	-	tyrA	Sama_0894	0.76	-0.4
1,082,340	+	tyrA	Sama_0894	0.81	-0.4
1,082,340	+	tyrA	Sama_0894	0.81	+1.9
1,082,340	+	tyrA	Sama_0894	0.81	+0.6
1,082,351	+	tyrA	Sama_0894	0.82	-0.7
1,082,351	+	tyrA	Sama_0894	0.82	+0.3
1,082,351	+	tyrA	Sama_0894	0.82	+0.4
1,082,351	+	tyrA	Sama_0894	0.82	+0.3
1,082,351	+	tyrA	Sama_0894	0.82	-1.2
1,082,403	+	tyrA	Sama_0894	0.86	-0.0
1,082,404	-	tyrA	Sama_0894	0.86	+0.7
1,082,462	+				+0.4
1,082,491	-				-0.1
1,082,572	-				+1.8
1,082,590	+				-0.1
1,082,609	+				-0.1
1,082,666	-				-0.7
1,082,678	-				-0.9
1,082,706	-				+0.1
1,082,746	+				-1.7
1,082,747	-				+0.6
1,082,747	-				+0.2
1,082,771	-				-1.0
1,082,795	+				+0.4
1,082,795	+				+1.0
1,082,796	-				-0.1
1,082,796	-				+1.6
1,082,796	-				-0.5
1,082,855	+				+0.6
1,082,855	+				-0.7
1,082,855	+				-0.9
1,082,855	+				-1.9
1,082,855	+				-0.2
1,082,855	+				-0.7
1,082,856	-				-1.0
1,082,858	-				+0.7
1,082,858	-				+0.2
1,082,858	-				-0.3
1,082,858	-				+0.2
1,082,991	+		Sama_0895	0.15	-1.4
1,082,991	+		Sama_0895	0.15	+2.0
1,082,991	+		Sama_0895	0.15	-0.1
1,082,991	+		Sama_0895	0.15	-0.5
1,082,991	+		Sama_0895	0.15	-1.1
1,082,991	+		Sama_0895	0.15	-0.3
1,082,991	+		Sama_0895	0.15	-0.4
1,082,991	+		Sama_0895	0.15	-1.0
1,082,991	+		Sama_0895	0.15	-0.8
1,082,992	-		Sama_0895	0.15	+0.0
1,082,992	-		Sama_0895	0.15	+0.1
1,082,992	-		Sama_0895	0.15	+0.2
1,082,992	-		Sama_0895	0.15	-1.1
1,082,992	-		Sama_0895	0.15	+0.5
1,082,996	+		Sama_0895	0.15	+0.4
1,082,997	-		Sama_0895	0.16	-2.4
1,082,997	-		Sama_0895	0.16	+0.4
1,083,031	+		Sama_0895	0.18	+1.0
1,083,067	+		Sama_0895	0.20	-0.1
1,083,068	-		Sama_0895	0.20	-2.7
1,083,215	+		Sama_0895	0.29	+0.0
1,083,216	-		Sama_0895	0.29	+0.0
1,083,216	-		Sama_0895	0.29	+0.2
1,083,239	+		Sama_0895	0.30	-0.4
1,083,240	-		Sama_0895	0.30	-0.9
1,083,240	-		Sama_0895	0.30	+0.1
1,083,349	+		Sama_0895	0.37	+1.3
1,083,394	+		Sama_0895	0.39	-0.4
1,083,448	-		Sama_0895	0.43	+1.2
1,083,448	-		Sama_0895	0.43	-0.7
1,083,448	-		Sama_0895	0.43	+0.3
1,083,448	-		Sama_0895	0.43	+0.5
1,083,448	-		Sama_0895	0.43	+0.8
1,083,448	-		Sama_0895	0.43	+0.8
1,083,451	+		Sama_0895	0.43	-0.1
1,083,544	+		Sama_0895	0.48	+1.1
1,083,544	+		Sama_0895	0.48	+0.8
1,083,551	+		Sama_0895	0.49	-0.9
1,083,551	+		Sama_0895	0.49	+1.1
1,083,552	-		Sama_0895	0.49	+0.4
1,083,552	-		Sama_0895	0.49	+1.0
1,083,595	+		Sama_0895	0.51	-0.4
1,083,603	-		Sama_0895	0.52	-0.7
1,083,616	-		Sama_0895	0.53	+0.4
1,083,616	-		Sama_0895	0.53	+0.2
1,083,623	+		Sama_0895	0.53	+0.6
1,083,624	-		Sama_0895	0.53	+1.0
1,083,700	+		Sama_0895	0.58	-0.7
1,083,700	+		Sama_0895	0.58	-0.9
1,083,701	-		Sama_0895	0.58	+0.4
1,083,710	-		Sama_0895	0.58	-1.5
1,083,722	+		Sama_0895	0.59	+0.5
1,083,733	+		Sama_0895	0.60	+0.1
1,083,733	+		Sama_0895	0.60	-1.5
1,083,733	+		Sama_0895	0.60	+1.1
1,083,734	-		Sama_0895	0.60	-0.0
1,083,836	+		Sama_0895	0.66	+0.9
1,083,836	+		Sama_0895	0.66	+0.3
1,083,836	+		Sama_0895	0.66	+0.6
1,083,837	-		Sama_0895	0.66	+0.5
1,083,864	+		Sama_0895	0.68	+0.3
1,083,864	+		Sama_0895	0.68	+1.1
1,083,865	-		Sama_0895	0.68	+1.3
1,083,865	-		Sama_0895	0.68	+0.6
1,083,931	+		Sama_0895	0.72	-0.4
1,083,952	-		Sama_0895	0.73	-0.1
1,083,986	+		Sama_0895	0.75	-1.0
1,083,987	-		Sama_0895	0.75	+0.7
1,083,987	-		Sama_0895	0.75	-0.0
1,084,022	-		Sama_0895	0.77	+0.3
1,084,048	+		Sama_0895	0.79	+0.5
1,084,048	+		Sama_0895	0.79	+0.6
1,084,048	+		Sama_0895	0.79	+1.0
1,084,049	-		Sama_0895	0.79	+1.6
1,084,049	-		Sama_0895	0.79	-1.6
1,084,049	-		Sama_0895	0.79	+0.6
1,084,052	+		Sama_0895	0.79	-0.6
1,084,052	+		Sama_0895	0.79	+0.6
1,084,052	+		Sama_0895	0.79	+0.4
1,084,052	+		Sama_0895	0.79	-0.4
1,084,052	+		Sama_0895	0.79	-3.2
1,084,052	+		Sama_0895	0.79	-1.0
1,084,052	+		Sama_0895	0.79	+1.0
1,084,053	-		Sama_0895	0.79	+0.3
1,084,053	-		Sama_0895	0.79	-1.1
1,084,053	-		Sama_0895	0.79	-0.2
1,084,053	-		Sama_0895	0.79	+0.3
1,084,053	-		Sama_0895	0.79	+0.1
1,084,063	+		Sama_0895	0.80	+0.0
1,084,063	+		Sama_0895	0.80	+0.5
1,084,063	+		Sama_0895	0.80	+0.8
1,084,064	-		Sama_0895	0.80	-0.2
1,084,131	-		Sama_0895	0.84	-1.1
1,084,131	-		Sama_0895	0.84	+0.6
1,084,273	+				-0.5
1,084,274	-				+0.4
1,084,348	+				-1.5
1,084,349	-				+0.5
1,084,355	-				+0.5
1,084,451	+				-0.2
1,084,451	+				-1.6
1,084,512	+				-0.3
1,084,513	-				+1.2
1,084,615	+		Sama_0896	0.14	+1.6
1,084,615	+		Sama_0896	0.14	+1.0
1,084,616	-		Sama_0896	0.15	+0.1
1,084,619	+		Sama_0896	0.15	-0.5
1,084,620	-		Sama_0896	0.15	+1.4
1,084,621	+		Sama_0896	0.15	+0.5
1,084,622	-		Sama_0896	0.15	-0.6
1,084,636	+		Sama_0896	0.16	+0.5
1,084,682	+		Sama_0896	0.21	-1.0
1,084,682	+		Sama_0896	0.21	+0.2
1,084,683	-		Sama_0896	0.21	+1.6
1,084,684	+		Sama_0896	0.21	+0.1
1,084,684	+		Sama_0896	0.21	-0.3
1,084,684	+		Sama_0896	0.21	-1.0
1,084,684	+		Sama_0896	0.21	-0.7
1,084,684	+		Sama_0896	0.21	-0.9
1,084,684	+		Sama_0896	0.21	-0.3
1,084,684	+		Sama_0896	0.21	+0.0
1,084,684	+		Sama_0896	0.21	+1.0
1,084,684	+		Sama_0896	0.21	+0.7
1,084,684	+		Sama_0896	0.21	+0.3
1,084,685	-		Sama_0896	0.21	+1.6
1,084,685	-		Sama_0896	0.21	-0.4
1,084,764	-		Sama_0896	0.28	-0.6
1,084,764	-		Sama_0896	0.28	+0.6
1,084,774	+		Sama_0896	0.29	+0.7
1,084,825	+		Sama_0896	0.34	+0.4
1,084,825	+		Sama_0896	0.34	-0.5
1,084,837	+		Sama_0896	0.35	-2.0
1,084,838	-		Sama_0896	0.35	-1.6
1,084,853	+		Sama_0896	0.37	+2.6
1,084,863	+		Sama_0896	0.38	-0.3
1,084,864	-		Sama_0896	0.38	+1.3
1,084,897	+		Sama_0896	0.41	-0.2
1,084,898	-		Sama_0896	0.41	+0.0
1,084,977	+		Sama_0896	0.48	+0.4
1,085,033	+		Sama_0896	0.54	+0.5
1,085,037	+		Sama_0896	0.54	+0.0
1,085,037	+		Sama_0896	0.54	-0.1
1,085,037	+		Sama_0896	0.54	+0.1
1,085,037	+		Sama_0896	0.54	-0.3
1,085,050	+		Sama_0896	0.55	+0.0
1,085,050	+		Sama_0896	0.55	-1.2
1,085,050	+		Sama_0896	0.55	-0.7
1,085,050	+		Sama_0896	0.55	+1.1
1,085,050	+		Sama_0896	0.55	-0.1
1,085,051	-		Sama_0896	0.55	+0.6
1,085,051	-		Sama_0896	0.55	+0.9
1,085,069	+		Sama_0896	0.57	-0.4
1,085,069	+		Sama_0896	0.57	+0.1
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	+1.1
1,085,147	+		Sama_0896	0.64	+0.1
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	-0.7
1,085,147	+		Sama_0896	0.64	-1.7
1,085,147	+		Sama_0896	0.64	+0.1
1,085,147	+		Sama_0896	0.64	-0.9
1,085,147	+		Sama_0896	0.64	-0.5
1,085,147	+		Sama_0896	0.64	-1.1
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	+1.2
1,085,147	+		Sama_0896	0.64	-1.6
1,085,147	+		Sama_0896	0.64	+1.9
1,085,147	+		Sama_0896	0.64	+0.1
1,085,147	+		Sama_0896	0.64	+0.8
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	-0.0
1,085,147	+		Sama_0896	0.64	+1.6
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	+0.3
1,085,147	+		Sama_0896	0.64	+0.2
1,085,147	+		Sama_0896	0.64	-2.0
1,085,148	-		Sama_0896	0.64	-0.6
1,085,148	-		Sama_0896	0.64	-1.2
1,085,148	-		Sama_0896	0.64	+0.2
1,085,148	-		Sama_0896	0.64	+1.2
1,085,148	-		Sama_0896	0.64	-0.0
1,085,148	-		Sama_0896	0.64	-0.5
1,085,148	-		Sama_0896	0.64	+1.6
1,085,148	-		Sama_0896	0.64	+1.6
1,085,148	-		Sama_0896	0.64	-1.2
1,085,148	-		Sama_0896	0.64	+1.0
1,085,148	-		Sama_0896	0.64	+0.1
1,085,148	-		Sama_0896	0.64	-1.5
1,085,148	-		Sama_0896	0.64	-1.6
1,085,148	-		Sama_0896	0.64	+2.0
1,085,148	-		Sama_0896	0.64	-0.6
1,085,148	-		Sama_0896	0.64	-1.0
1,085,168	+		Sama_0896	0.66	-0.6
1,085,168	+		Sama_0896	0.66	+1.0
1,085,168	+		Sama_0896	0.66	+0.1
1,085,168	+		Sama_0896	0.66	+0.6
1,085,168	+		Sama_0896	0.66	+0.9
1,085,168	+		Sama_0896	0.66	+0.3
1,085,169	-		Sama_0896	0.66	-1.1
1,085,169	-		Sama_0896	0.66	-1.9
1,085,170	+		Sama_0896	0.66	-0.9
1,085,170	+		Sama_0896	0.66	+0.4
1,085,170	+		Sama_0896	0.66	-0.1
1,085,171	-		Sama_0896	0.66	+0.6
1,085,182	-		Sama_0896	0.67	-0.2
1,085,281	+		Sama_0896	0.77	-0.2
1,085,281	+		Sama_0896	0.77	-0.9
1,085,299	+		Sama_0896	0.78	+0.0
1,085,299	+		Sama_0896	0.78	-0.8
1,085,299	+		Sama_0896	0.78	+0.0
1,085,299	+		Sama_0896	0.78	-0.1
1,085,299	+		Sama_0896	0.78	-0.2
1,085,300	-		Sama_0896	0.78	-1.6
1,085,353	+		Sama_0896	0.83	-1.5
1,085,354	-		Sama_0896	0.83	+0.3
1,085,358	+		Sama_0896	0.84	+0.4
1,085,358	+		Sama_0896	0.84	+0.3
1,085,358	+		Sama_0896	0.84	+1.2
1,085,359	-		Sama_0896	0.84	-0.4
1,085,359	-		Sama_0896	0.84	-0.8
1,085,359	-		Sama_0896	0.84	-0.7
1,085,359	-		Sama_0896	0.84	+0.3
1,085,401	+		Sama_0896	0.88	-1.6