Experiment: Sisomicin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0759 and Sama_0760 are separated by 332 nucleotides Sama_0760 and Sama_0761 overlap by 4 nucleotides
Sama_0759: Sama_0759 - alpha-ribazole-5'-phosphate phosphatase, putative (RefSeq), at 942,305 to 942,931
_0759
Sama_0760: Sama_0760 - iron-compound ABC transporter, ATP-binding protein, putative (RefSeq), at 943,264 to 944,079
_0760
Sama_0761: Sama_0761 - iron-compound ABC transporter, permease protein (RefSeq), at 944,076 to 945,119
_0761
Position (kb) 943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 942.418 kb on + strand, within Sama_0759 at 942.419 kb on - strand, within Sama_0759 at 942.419 kb on - strand, within Sama_0759 at 942.439 kb on - strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.529 kb on + strand, within Sama_0759 at 942.529 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.547 kb on + strand, within Sama_0759 at 942.548 kb on - strand, within Sama_0759 at 942.548 kb on - strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.743 kb on - strand, within Sama_0759 at 942.743 kb on - strand, within Sama_0759 at 942.837 kb on - strand, within Sama_0759 at 942.935 kb on + strand at 942.945 kb on - strand at 942.988 kb on + strand at 942.989 kb on - strand at 943.006 kb on + strand at 943.007 kb on - strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.162 kb on - strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.251 kb on - strand at 943.251 kb on - strand at 943.304 kb on + strand at 943.305 kb on - strand at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.422 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.464 kb on + strand, within Sama_0760 at 943.474 kb on + strand, within Sama_0760 at 943.475 kb on - strand, within Sama_0760 at 943.572 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.624 kb on - strand, within Sama_0760 at 943.660 kb on + strand, within Sama_0760 at 943.749 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.939 kb on - strand, within Sama_0760 at 943.961 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.984 kb on - strand, within Sama_0760 at 943.984 kb on - strand, within Sama_0760 at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.023 kb on + strand at 944.023 kb on + strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.098 kb on + strand at 944.098 kb on + strand at 944.099 kb on - strand at 944.139 kb on - strand at 944.139 kb on - strand at 944.220 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.229 kb on - strand, within Sama_0761 at 944.263 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.306 kb on - strand, within Sama_0761 at 944.391 kb on + strand, within Sama_0761 at 944.438 kb on - strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.465 kb on - strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.519 kb on - strand, within Sama_0761 at 944.532 kb on - strand, within Sama_0761 at 944.629 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.651 kb on - strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.828 kb on + strand, within Sama_0761 at 944.829 kb on - strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.841 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 945.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml remove 942,418 + Sama_0759 0.18 +0.2 942,419 - Sama_0759 0.18 +0.1 942,419 - Sama_0759 0.18 +0.2 942,439 - Sama_0759 0.21 -0.5 942,507 + Sama_0759 0.32 -0.2 942,507 + Sama_0759 0.32 -0.7 942,507 + Sama_0759 0.32 +0.6 942,508 - Sama_0759 0.32 +0.3 942,508 - Sama_0759 0.32 -0.7 942,508 - Sama_0759 0.32 +0.2 942,529 + Sama_0759 0.36 +0.6 942,529 + Sama_0759 0.36 -0.5 942,543 + Sama_0759 0.38 -0.2 942,543 + Sama_0759 0.38 -1.5 942,543 + Sama_0759 0.38 -1.8 942,543 + Sama_0759 0.38 -0.6 942,543 + Sama_0759 0.38 +0.1 942,543 + Sama_0759 0.38 -0.4 942,543 + Sama_0759 0.38 +0.4 942,543 + Sama_0759 0.38 +0.2 942,543 + Sama_0759 0.38 +0.6 942,543 + Sama_0759 0.38 -1.9 942,543 + Sama_0759 0.38 +1.0 942,543 + Sama_0759 0.38 -0.3 942,543 + Sama_0759 0.38 -1.4 942,543 + Sama_0759 0.38 -0.2 942,543 + Sama_0759 0.38 +1.6 942,543 + Sama_0759 0.38 -0.4 942,543 + Sama_0759 0.38 -0.8 942,543 + Sama_0759 0.38 -0.3 942,544 - Sama_0759 0.38 +0.7 942,544 - Sama_0759 0.38 -0.4 942,544 - Sama_0759 0.38 -0.9 942,544 - Sama_0759 0.38 -0.0 942,544 - Sama_0759 0.38 -1.2 942,544 - Sama_0759 0.38 -1.4 942,544 - Sama_0759 0.38 -0.7 942,544 - Sama_0759 0.38 -0.5 942,544 - Sama_0759 0.38 +1.6 942,544 - Sama_0759 0.38 +0.6 942,544 - Sama_0759 0.38 +1.3 942,544 - Sama_0759 0.38 -0.7 942,544 - Sama_0759 0.38 -0.4 942,544 - Sama_0759 0.38 +0.1 942,544 - Sama_0759 0.38 +1.6 942,544 - Sama_0759 0.38 -1.4 942,544 - Sama_0759 0.38 -0.2 942,544 - Sama_0759 0.38 -1.1 942,544 - Sama_0759 0.38 -0.7 942,544 - Sama_0759 0.38 -0.0 942,547 + Sama_0759 0.39 -0.9 942,548 - Sama_0759 0.39 -0.5 942,548 - Sama_0759 0.39 -1.2 942,742 + Sama_0759 0.70 +0.3 942,742 + Sama_0759 0.70 -0.6 942,742 + Sama_0759 0.70 -0.2 942,743 - Sama_0759 0.70 +1.1 942,743 - Sama_0759 0.70 +0.1 942,837 - Sama_0759 0.85 -2.1 942,935 + +0.6 942,945 - -0.1 942,988 + +0.4 942,989 - -0.7 943,006 + -1.2 943,007 - -0.9 943,078 + -1.5 943,078 + +0.1 943,078 + -0.5 943,078 + -1.4 943,078 + -0.4 943,078 + -1.9 943,078 + -0.1 943,078 + +0.0 943,078 + -0.4 943,078 + +1.0 943,078 + +0.9 943,079 - +0.2 943,079 - -0.2 943,079 - +1.1 943,079 - -1.5 943,079 - -1.7 943,079 - -0.2 943,079 - -1.6 943,079 - -0.6 943,079 - +0.4 943,083 + +0.6 943,083 + +0.5 943,083 + +0.2 943,083 + -0.5 943,083 + +0.1 943,084 - -0.7 943,084 - +0.3 943,084 - -0.4 943,084 - -0.8 943,084 - -0.5 943,088 + +0.4 943,088 + +1.5 943,088 + -0.6 943,089 - -1.7 943,089 - -0.7 943,089 - -2.4 943,141 - +1.1 943,141 - +0.2 943,141 - -0.2 943,162 - -0.2 943,198 + +0.3 943,198 + +0.8 943,198 + -0.1 943,199 - -0.9 943,199 - -1.2 943,199 - -0.6 943,199 - -2.1 943,250 + -0.8 943,250 + -1.2 943,250 + +0.4 943,251 - -0.8 943,251 - -1.7 943,304 + -2.8 943,305 - -0.8 943,360 + Sama_0760 0.12 -1.2 943,360 + Sama_0760 0.12 -0.7 943,360 + Sama_0760 0.12 -1.1 943,361 - Sama_0760 0.12 -0.4 943,361 - Sama_0760 0.12 -0.1 943,422 + Sama_0760 0.19 -0.9 943,445 + Sama_0760 0.22 -2.1 943,445 + Sama_0760 0.22 -0.3 943,445 + Sama_0760 0.22 +0.3 943,445 + Sama_0760 0.22 -0.7 943,445 + Sama_0760 0.22 +0.8 943,445 + Sama_0760 0.22 -1.2 943,445 + Sama_0760 0.22 -0.0 943,446 - Sama_0760 0.22 +0.4 943,446 - Sama_0760 0.22 -2.6 943,464 + Sama_0760 0.25 +0.1 943,474 + Sama_0760 0.26 +0.6 943,475 - Sama_0760 0.26 -1.1 943,572 + Sama_0760 0.38 -0.1 943,623 + Sama_0760 0.44 -1.0 943,623 + Sama_0760 0.44 -1.9 943,624 - Sama_0760 0.44 -0.7 943,660 + Sama_0760 0.49 -0.9 943,749 + Sama_0760 0.59 -0.5 943,824 + Sama_0760 0.69 -0.7 943,824 + Sama_0760 0.69 -1.3 943,939 - Sama_0760 0.83 +0.3 943,961 + Sama_0760 0.85 -1.0 943,977 + Sama_0760 0.87 -0.1 943,977 + Sama_0760 0.87 +0.3 943,977 + Sama_0760 0.87 -0.7 943,978 - Sama_0760 0.88 -2.3 943,978 - Sama_0760 0.88 -1.8 943,978 - Sama_0760 0.88 -0.4 943,978 - Sama_0760 0.88 -0.7 943,983 + Sama_0760 0.88 +0.3 943,983 + Sama_0760 0.88 -1.0 943,983 + Sama_0760 0.88 -0.1 943,983 + Sama_0760 0.88 -2.3 943,984 - Sama_0760 0.88 -1.5 943,984 - Sama_0760 0.88 +0.1 944,020 + -0.1 944,020 + -1.8 944,020 + -1.2 944,020 + -0.2 944,021 - -0.2 944,021 - -1.1 944,023 + -0.4 944,023 + -0.5 944,024 - +0.2 944,024 - -1.0 944,024 - -0.7 944,024 - -0.6 944,026 + +0.2 944,026 + -0.8 944,026 + +0.2 944,026 + +0.6 944,026 + -0.7 944,026 + -0.2 944,026 + -0.7 944,027 - +1.6 944,027 - -2.3 944,027 - -0.2 944,027 - +0.2 944,027 - -0.9 944,027 - -0.1 944,027 - -0.2 944,027 - +0.1 944,027 - -2.6 944,032 + -0.8 944,032 + +0.3 944,032 + +0.5 944,032 + -0.5 944,033 - +0.5 944,033 - -1.7 944,033 - -1.4 944,033 - -0.0 944,033 - -1.1 944,033 - -0.9 944,033 - -1.5 944,098 + +0.1 944,098 + +0.6 944,099 - +0.9 944,139 - -0.4 944,139 - -0.5 944,220 + Sama_0761 0.14 -0.5 944,228 + Sama_0761 0.15 +0.1 944,228 + Sama_0761 0.15 -1.2 944,228 + Sama_0761 0.15 -0.5 944,228 + Sama_0761 0.15 -1.5 944,229 - Sama_0761 0.15 -1.5 944,263 - Sama_0761 0.18 -1.5 944,277 - Sama_0761 0.19 +0.3 944,277 - Sama_0761 0.19 -1.1 944,305 + Sama_0761 0.22 -0.6 944,305 + Sama_0761 0.22 -1.6 944,306 - Sama_0761 0.22 -0.4 944,391 + Sama_0761 0.30 -1.7 944,438 - Sama_0761 0.35 +0.4 944,453 + Sama_0761 0.36 +0.4 944,453 + Sama_0761 0.36 -0.9 944,454 - Sama_0761 0.36 -0.5 944,454 - Sama_0761 0.36 -1.0 944,454 - Sama_0761 0.36 -0.2 944,454 - Sama_0761 0.36 -0.4 944,465 - Sama_0761 0.37 -0.8 944,507 + Sama_0761 0.41 -1.2 944,507 + Sama_0761 0.41 +0.3 944,508 - Sama_0761 0.41 -0.7 944,508 - Sama_0761 0.41 -0.4 944,508 - Sama_0761 0.41 +0.4 944,508 - Sama_0761 0.41 -0.1 944,519 - Sama_0761 0.42 -0.7 944,532 - Sama_0761 0.44 -1.1 944,629 + Sama_0761 0.53 -0.3 944,650 + Sama_0761 0.55 -0.9 944,650 + Sama_0761 0.55 -0.6 944,651 - Sama_0761 0.55 -0.2 944,665 + Sama_0761 0.56 -2.8 944,665 + Sama_0761 0.56 -2.2 944,666 - Sama_0761 0.57 +0.8 944,666 - Sama_0761 0.57 -1.0 944,828 + Sama_0761 0.72 -2.4 944,829 - Sama_0761 0.72 -0.7 944,840 + Sama_0761 0.73 -0.8 944,840 + Sama_0761 0.73 -1.4 944,840 + Sama_0761 0.73 +0.3 944,841 - Sama_0761 0.73 -2.4 944,882 - Sama_0761 0.77 -3.0 944,882 - Sama_0761 0.77 -0.2 945,059 + -1.2
Or see this region's nucleotide sequence