Experiment: Sisomicin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0680 and Sama_0681 are separated by 156 nucleotides Sama_0681 and Sama_0682 are separated by 133 nucleotides Sama_0682 and Sama_0683 are separated by 52 nucleotides Sama_0683 and Sama_0684 are separated by 86 nucleotides
Sama_0680: Sama_0680 - XRE family transcriptional regulator (RefSeq), at 841,258 to 842,772
_0680
Sama_0681: Sama_0681 - malate synthase (RefSeq), at 842,929 to 843,501
_0681
Sama_0682: Sama_0682 - putative glutathione S-transferase (RefSeq), at 843,635 to 844,309
_0682
Sama_0683: Sama_0683 - hypothetical protein (RefSeq), at 844,362 to 844,652
_0683
Sama_0684: Sama_0684 - aminopeptidase P, putative (RefSeq), at 844,739 to 846,538
_0684
Position (kb) 843
844
845 Strain fitness (log2 ratio) -2
-1
0
1
2 at 842.662 kb on + strand at 842.662 kb on + strand at 842.662 kb on + strand at 842.663 kb on - strand at 842.663 kb on - strand at 842.663 kb on - strand at 842.663 kb on - strand at 842.692 kb on + strand at 842.692 kb on + strand at 842.693 kb on - strand at 842.693 kb on - strand at 842.693 kb on - strand at 842.908 kb on + strand at 842.908 kb on + strand at 842.908 kb on + strand at 842.908 kb on + strand at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.087 kb on + strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.088 kb on - strand, within Sama_0681 at 843.103 kb on + strand, within Sama_0681 at 843.103 kb on + strand, within Sama_0681 at 843.104 kb on - strand, within Sama_0681 at 843.104 kb on - strand, within Sama_0681 at 843.104 kb on - strand, within Sama_0681 at 843.112 kb on + strand, within Sama_0681 at 843.112 kb on + strand, within Sama_0681 at 843.112 kb on + strand, within Sama_0681 at 843.115 kb on + strand, within Sama_0681 at 843.238 kb on - strand, within Sama_0681 at 843.251 kb on + strand, within Sama_0681 at 843.473 kb on - strand at 843.500 kb on - strand at 843.500 kb on - strand at 843.500 kb on - strand at 843.500 kb on - strand at 843.534 kb on - strand at 843.538 kb on - strand at 843.538 kb on - strand at 843.590 kb on + strand at 843.591 kb on - strand at 843.591 kb on - strand at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.774 kb on + strand, within Sama_0682 at 843.775 kb on - strand, within Sama_0682 at 843.775 kb on - strand, within Sama_0682 at 843.775 kb on - strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.807 kb on + strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.808 kb on - strand, within Sama_0682 at 843.815 kb on + strand, within Sama_0682 at 843.820 kb on + strand, within Sama_0682 at 843.820 kb on + strand, within Sama_0682 at 843.821 kb on - strand, within Sama_0682 at 843.829 kb on + strand, within Sama_0682 at 843.829 kb on + strand, within Sama_0682 at 843.895 kb on + strand, within Sama_0682 at 843.896 kb on - strand, within Sama_0682 at 843.968 kb on - strand, within Sama_0682 at 843.998 kb on - strand, within Sama_0682 at 844.007 kb on - strand, within Sama_0682 at 844.007 kb on - strand, within Sama_0682 at 844.051 kb on - strand, within Sama_0682 at 844.089 kb on + strand, within Sama_0682 at 844.089 kb on + strand, within Sama_0682 at 844.090 kb on - strand, within Sama_0682 at 844.104 kb on + strand, within Sama_0682 at 844.104 kb on + strand, within Sama_0682 at 844.105 kb on - strand, within Sama_0682 at 844.278 kb on + strand at 844.278 kb on + strand at 844.286 kb on - strand at 844.296 kb on + strand at 844.296 kb on + strand at 844.296 kb on + strand at 844.296 kb on + strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.297 kb on - strand at 844.329 kb on + strand at 844.329 kb on + strand at 844.330 kb on - strand at 844.335 kb on + strand at 844.335 kb on + strand at 844.336 kb on - strand at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.409 kb on - strand, within Sama_0683 at 844.481 kb on + strand, within Sama_0683 at 844.502 kb on - strand, within Sama_0683 at 844.502 kb on - strand, within Sama_0683 at 844.558 kb on + strand, within Sama_0683 at 844.558 kb on + strand, within Sama_0683 at 844.558 kb on + strand, within Sama_0683 at 844.559 kb on - strand, within Sama_0683 at 844.559 kb on - strand, within Sama_0683 at 844.559 kb on - strand, within Sama_0683 at 844.603 kb on + strand, within Sama_0683 at 844.652 kb on + strand at 844.652 kb on + strand at 844.653 kb on - strand at 844.710 kb on - strand at 844.712 kb on + strand at 844.713 kb on - strand at 844.713 kb on - strand at 844.713 kb on - strand at 844.744 kb on + strand at 844.744 kb on + strand at 844.744 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.809 kb on + strand at 844.810 kb on - strand at 844.810 kb on - strand at 844.810 kb on - strand at 844.810 kb on - strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.811 kb on + strand at 844.812 kb on - strand at 844.812 kb on - strand at 844.812 kb on - strand at 844.812 kb on - strand at 844.917 kb on + strand at 844.918 kb on - strand at 845.004 kb on + strand, within Sama_0684 at 845.008 kb on - strand, within Sama_0684 at 845.008 kb on - strand, within Sama_0684 at 845.008 kb on - strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.090 kb on + strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.091 kb on - strand, within Sama_0684 at 845.122 kb on + strand, within Sama_0684 at 845.122 kb on + strand, within Sama_0684 at 845.122 kb on + strand, within Sama_0684 at 845.134 kb on - strand, within Sama_0684 at 845.158 kb on - strand, within Sama_0684 at 845.158 kb on - strand, within Sama_0684 at 845.227 kb on + strand, within Sama_0684 at 845.285 kb on - strand, within Sama_0684
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml remove 842,662 + +0.6 842,662 + -0.1 842,662 + -1.3 842,663 - +1.9 842,663 - +0.1 842,663 - -1.0 842,663 - -1.5 842,692 + -0.2 842,692 + -0.2 842,693 - -1.5 842,693 - -1.1 842,693 - -0.3 842,908 + -1.1 842,908 + -0.6 842,908 + +0.3 842,908 + -0.8 843,087 + Sama_0681 0.28 +0.7 843,087 + Sama_0681 0.28 +0.7 843,087 + Sama_0681 0.28 -0.2 843,087 + Sama_0681 0.28 -1.1 843,087 + Sama_0681 0.28 -0.8 843,087 + Sama_0681 0.28 -0.7 843,088 - Sama_0681 0.28 -2.1 843,088 - Sama_0681 0.28 -0.1 843,088 - Sama_0681 0.28 +0.2 843,088 - Sama_0681 0.28 -0.5 843,088 - Sama_0681 0.28 -1.0 843,088 - Sama_0681 0.28 -0.5 843,088 - Sama_0681 0.28 -0.3 843,088 - Sama_0681 0.28 -0.6 843,088 - Sama_0681 0.28 -0.8 843,103 + Sama_0681 0.30 +0.2 843,103 + Sama_0681 0.30 +0.3 843,104 - Sama_0681 0.31 -0.8 843,104 - Sama_0681 0.31 -1.1 843,104 - Sama_0681 0.31 -0.3 843,112 + Sama_0681 0.32 -0.5 843,112 + Sama_0681 0.32 -0.9 843,112 + Sama_0681 0.32 -1.7 843,115 + Sama_0681 0.32 -0.2 843,238 - Sama_0681 0.54 +0.2 843,251 + Sama_0681 0.56 +0.2 843,473 - -0.1 843,500 - -1.1 843,500 - -0.1 843,500 - -0.5 843,500 - -0.1 843,534 - +0.5 843,538 - -0.1 843,538 - +0.2 843,590 + +0.2 843,591 - -0.1 843,591 - +0.7 843,774 + Sama_0682 0.21 -0.7 843,774 + Sama_0682 0.21 -0.5 843,774 + Sama_0682 0.21 -0.6 843,774 + Sama_0682 0.21 -0.8 843,774 + Sama_0682 0.21 -0.8 843,774 + Sama_0682 0.21 +0.3 843,775 - Sama_0682 0.21 -1.1 843,775 - Sama_0682 0.21 +0.8 843,775 - Sama_0682 0.21 -0.6 843,807 + Sama_0682 0.25 +0.4 843,807 + Sama_0682 0.25 -0.2 843,807 + Sama_0682 0.25 -1.4 843,807 + Sama_0682 0.25 +0.9 843,807 + Sama_0682 0.25 +0.1 843,808 - Sama_0682 0.26 -0.1 843,808 - Sama_0682 0.26 -0.7 843,808 - Sama_0682 0.26 +0.5 843,808 - Sama_0682 0.26 -0.5 843,808 - Sama_0682 0.26 -0.0 843,815 + Sama_0682 0.27 -2.7 843,820 + Sama_0682 0.27 -0.4 843,820 + Sama_0682 0.27 +0.5 843,821 - Sama_0682 0.28 +0.2 843,829 + Sama_0682 0.29 -1.2 843,829 + Sama_0682 0.29 +1.1 843,895 + Sama_0682 0.39 -0.1 843,896 - Sama_0682 0.39 -0.5 843,968 - Sama_0682 0.49 -0.4 843,998 - Sama_0682 0.54 +0.4 844,007 - Sama_0682 0.55 +0.3 844,007 - Sama_0682 0.55 -1.6 844,051 - Sama_0682 0.62 -0.1 844,089 + Sama_0682 0.67 +0.5 844,089 + Sama_0682 0.67 +1.2 844,090 - Sama_0682 0.67 -0.9 844,104 + Sama_0682 0.69 -1.1 844,104 + Sama_0682 0.69 -0.1 844,105 - Sama_0682 0.70 +0.5 844,278 + +1.8 844,278 + +0.3 844,286 - -0.9 844,296 + +0.3 844,296 + +0.4 844,296 + +0.3 844,296 + -0.9 844,297 - -0.8 844,297 - -1.7 844,297 - -0.5 844,297 - -0.8 844,297 - -0.7 844,329 + -0.1 844,329 + -0.0 844,330 - -0.6 844,335 + +0.8 844,335 + +0.2 844,336 - +0.1 844,409 - Sama_0683 0.16 +0.3 844,409 - Sama_0683 0.16 +1.4 844,409 - Sama_0683 0.16 -0.9 844,409 - Sama_0683 0.16 -0.9 844,409 - Sama_0683 0.16 +0.2 844,481 + Sama_0683 0.41 -0.6 844,502 - Sama_0683 0.48 +1.7 844,502 - Sama_0683 0.48 -0.8 844,558 + Sama_0683 0.67 +1.0 844,558 + Sama_0683 0.67 -0.6 844,558 + Sama_0683 0.67 +1.1 844,559 - Sama_0683 0.68 -1.1 844,559 - Sama_0683 0.68 -0.6 844,559 - Sama_0683 0.68 +0.2 844,603 + Sama_0683 0.83 -0.3 844,652 + -0.4 844,652 + -0.1 844,653 - -1.8 844,710 - -0.7 844,712 + -0.2 844,713 - -0.7 844,713 - -0.1 844,713 - +0.2 844,744 + -1.2 844,744 + +0.2 844,744 + -1.3 844,809 + +0.1 844,809 + +0.3 844,809 + -1.0 844,809 + +0.5 844,809 + +1.7 844,810 - -0.5 844,810 - +0.5 844,810 - +0.1 844,810 - -0.0 844,811 + -0.0 844,811 + -0.1 844,811 + -0.2 844,811 + -0.6 844,811 + +0.3 844,811 + -0.8 844,811 + -0.5 844,812 - -0.8 844,812 - -0.2 844,812 - -0.4 844,812 - -1.3 844,917 + +0.5 844,918 - -0.2 845,004 + Sama_0684 0.15 -0.4 845,008 - Sama_0684 0.15 -0.3 845,008 - Sama_0684 0.15 +0.9 845,008 - Sama_0684 0.15 -0.8 845,090 + Sama_0684 0.20 +0.1 845,090 + Sama_0684 0.20 -2.1 845,090 + Sama_0684 0.20 -0.9 845,090 + Sama_0684 0.20 -1.1 845,091 - Sama_0684 0.20 +1.3 845,091 - Sama_0684 0.20 -0.7 845,091 - Sama_0684 0.20 -0.6 845,091 - Sama_0684 0.20 +0.7 845,091 - Sama_0684 0.20 +0.7 845,091 - Sama_0684 0.20 -0.5 845,091 - Sama_0684 0.20 -0.4 845,091 - Sama_0684 0.20 +2.0 845,122 + Sama_0684 0.21 -1.1 845,122 + Sama_0684 0.21 +0.2 845,122 + Sama_0684 0.21 +1.7 845,134 - Sama_0684 0.22 -1.7 845,158 - Sama_0684 0.23 -0.2 845,158 - Sama_0684 0.23 -1.1 845,227 + Sama_0684 0.27 -0.5 845,285 - Sama_0684 0.30 -1.9
Or see this region's nucleotide sequence