Strain Fitness in Shewanella amazonensis SB2B around Sama_0681

Experiment: Sisomicin 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0680 and Sama_0681 are separated by 156 nucleotidesSama_0681 and Sama_0682 are separated by 133 nucleotidesSama_0682 and Sama_0683 are separated by 52 nucleotides Sama_0680: Sama_0680 - XRE family transcriptional regulator (RefSeq), at 841,258 to 842,772 _0680 Sama_0681: Sama_0681 - malate synthase (RefSeq), at 842,929 to 843,501 _0681 Sama_0682: Sama_0682 - putative glutathione S-transferase (RefSeq), at 843,635 to 844,309 _0682 Sama_0683: Sama_0683 - hypothetical protein (RefSeq), at 844,362 to 844,652 _0683 Position (kb) 842 843 844Strain fitness (log2 ratio) -2 -1 0 1 2at 841.948 kb on + strand, within Sama_0680at 841.948 kb on + strand, within Sama_0680at 841.948 kb on + strand, within Sama_0680at 841.948 kb on + strand, within Sama_0680at 841.948 kb on + strand, within Sama_0680at 841.948 kb on + strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.949 kb on - strand, within Sama_0680at 841.953 kb on + strand, within Sama_0680at 841.953 kb on + strand, within Sama_0680at 841.954 kb on - strand, within Sama_0680at 841.978 kb on + strand, within Sama_0680at 841.978 kb on + strand, within Sama_0680at 841.979 kb on - strand, within Sama_0680at 841.979 kb on - strand, within Sama_0680at 841.980 kb on + strand, within Sama_0680at 841.980 kb on + strand, within Sama_0680at 841.980 kb on + strand, within Sama_0680at 841.980 kb on + strand, within Sama_0680at 841.980 kb on + strand, within Sama_0680at 841.980 kb on + strand, within Sama_0680at 841.981 kb on - strand, within Sama_0680at 841.981 kb on - strand, within Sama_0680at 841.981 kb on - strand, within Sama_0680at 841.981 kb on - strand, within Sama_0680at 842.005 kb on + strand, within Sama_0680at 842.005 kb on + strand, within Sama_0680at 842.005 kb on + strand, within Sama_0680at 842.005 kb on + strand, within Sama_0680at 842.005 kb on + strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.006 kb on - strand, within Sama_0680at 842.007 kb on + strand, within Sama_0680at 842.008 kb on - strand, within Sama_0680at 842.008 kb on - strand, within Sama_0680at 842.026 kb on + strand, within Sama_0680at 842.027 kb on - strand, within Sama_0680at 842.027 kb on - strand, within Sama_0680at 842.068 kb on + strand, within Sama_0680at 842.068 kb on + strand, within Sama_0680at 842.068 kb on + strand, within Sama_0680at 842.068 kb on + strand, within Sama_0680at 842.069 kb on - strand, within Sama_0680at 842.069 kb on - strand, within Sama_0680at 842.069 kb on - strand, within Sama_0680at 842.075 kb on - strand, within Sama_0680at 842.088 kb on - strand, within Sama_0680at 842.128 kb on - strand, within Sama_0680at 842.289 kb on + strand, within Sama_0680at 842.289 kb on + strand, within Sama_0680at 842.290 kb on - strand, within Sama_0680at 842.434 kb on - strand, within Sama_0680at 842.560 kb on + strand, within Sama_0680at 842.561 kb on - strand, within Sama_0680at 842.561 kb on - strand, within Sama_0680at 842.561 kb on - strand, within Sama_0680at 842.561 kb on - strand, within Sama_0680at 842.627 kb on + strandat 842.627 kb on + strandat 842.628 kb on - strandat 842.628 kb on - strandat 842.628 kb on - strandat 842.628 kb on - strandat 842.628 kb on - strandat 842.633 kb on - strandat 842.662 kb on + strandat 842.662 kb on + strandat 842.662 kb on + strandat 842.663 kb on - strandat 842.663 kb on - strandat 842.663 kb on - strandat 842.663 kb on - strandat 842.692 kb on + strandat 842.692 kb on + strandat 842.693 kb on - strandat 842.693 kb on - strandat 842.693 kb on - strandat 842.908 kb on + strandat 842.908 kb on + strandat 842.908 kb on + strandat 842.908 kb on + strandat 843.087 kb on + strand, within Sama_0681at 843.087 kb on + strand, within Sama_0681at 843.087 kb on + strand, within Sama_0681at 843.087 kb on + strand, within Sama_0681at 843.087 kb on + strand, within Sama_0681at 843.087 kb on + strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.088 kb on - strand, within Sama_0681at 843.103 kb on + strand, within Sama_0681at 843.103 kb on + strand, within Sama_0681at 843.104 kb on - strand, within Sama_0681at 843.104 kb on - strand, within Sama_0681at 843.104 kb on - strand, within Sama_0681at 843.112 kb on + strand, within Sama_0681at 843.112 kb on + strand, within Sama_0681at 843.112 kb on + strand, within Sama_0681at 843.115 kb on + strand, within Sama_0681at 843.238 kb on - strand, within Sama_0681at 843.251 kb on + strand, within Sama_0681at 843.473 kb on - strandat 843.500 kb on - strandat 843.500 kb on - strandat 843.500 kb on - strandat 843.500 kb on - strandat 843.534 kb on - strandat 843.538 kb on - strandat 843.538 kb on - strandat 843.590 kb on + strandat 843.591 kb on - strandat 843.591 kb on - strandat 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.774 kb on + strand, within Sama_0682at 843.775 kb on - strand, within Sama_0682at 843.775 kb on - strand, within Sama_0682at 843.775 kb on - strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.807 kb on + strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.808 kb on - strand, within Sama_0682at 843.815 kb on + strand, within Sama_0682at 843.820 kb on + strand, within Sama_0682at 843.820 kb on + strand, within Sama_0682at 843.821 kb on - strand, within Sama_0682at 843.829 kb on + strand, within Sama_0682at 843.829 kb on + strand, within Sama_0682at 843.895 kb on + strand, within Sama_0682at 843.896 kb on - strand, within Sama_0682at 843.968 kb on - strand, within Sama_0682at 843.998 kb on - strand, within Sama_0682at 844.007 kb on - strand, within Sama_0682at 844.007 kb on - strand, within Sama_0682at 844.051 kb on - strand, within Sama_0682at 844.089 kb on + strand, within Sama_0682at 844.089 kb on + strand, within Sama_0682at 844.090 kb on - strand, within Sama_0682at 844.104 kb on + strand, within Sama_0682at 844.104 kb on + strand, within Sama_0682at 844.105 kb on - strand, within Sama_0682at 844.278 kb on + strandat 844.278 kb on + strandat 844.286 kb on - strandat 844.296 kb on + strandat 844.296 kb on + strandat 844.296 kb on + strandat 844.296 kb on + strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.297 kb on - strandat 844.329 kb on + strandat 844.329 kb on + strandat 844.330 kb on - strandat 844.335 kb on + strandat 844.335 kb on + strandat 844.336 kb on - strandat 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.409 kb on - strand, within Sama_0683at 844.481 kb on + strand, within Sama_0683

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml
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841,948 + Sama_0680 0.46 -0.3
841,948 + Sama_0680 0.46 +0.2
841,948 + Sama_0680 0.46 +0.9
841,948 + Sama_0680 0.46 -0.3
841,948 + Sama_0680 0.46 -1.8
841,948 + Sama_0680 0.46 +1.2
841,949 - Sama_0680 0.46 -1.7
841,949 - Sama_0680 0.46 +1.1
841,949 - Sama_0680 0.46 -0.5
841,949 - Sama_0680 0.46 -0.4
841,949 - Sama_0680 0.46 +0.4
841,949 - Sama_0680 0.46 +2.2
841,949 - Sama_0680 0.46 +0.2
841,949 - Sama_0680 0.46 +0.5
841,953 + Sama_0680 0.46 +1.2
841,953 + Sama_0680 0.46 -0.3
841,954 - Sama_0680 0.46 -0.9
841,978 + Sama_0680 0.48 -0.7
841,978 + Sama_0680 0.48 +1.0
841,979 - Sama_0680 0.48 -1.3
841,979 - Sama_0680 0.48 +1.0
841,980 + Sama_0680 0.48 +0.3
841,980 + Sama_0680 0.48 +0.8
841,980 + Sama_0680 0.48 +0.0
841,980 + Sama_0680 0.48 -0.8
841,980 + Sama_0680 0.48 -1.9
841,980 + Sama_0680 0.48 +0.5
841,981 - Sama_0680 0.48 +0.2
841,981 - Sama_0680 0.48 -0.9
841,981 - Sama_0680 0.48 -1.1
841,981 - Sama_0680 0.48 -0.5
842,005 + Sama_0680 0.49 +0.2
842,005 + Sama_0680 0.49 -0.6
842,005 + Sama_0680 0.49 -0.5
842,005 + Sama_0680 0.49 +0.3
842,005 + Sama_0680 0.49 -0.7
842,006 - Sama_0680 0.49 -1.1
842,006 - Sama_0680 0.49 -0.7
842,006 - Sama_0680 0.49 +0.3
842,006 - Sama_0680 0.49 -0.3
842,006 - Sama_0680 0.49 -0.1
842,006 - Sama_0680 0.49 +0.9
842,006 - Sama_0680 0.49 -0.4
842,006 - Sama_0680 0.49 +0.9
842,006 - Sama_0680 0.49 +0.3
842,007 + Sama_0680 0.49 -0.0
842,008 - Sama_0680 0.50 -0.5
842,008 - Sama_0680 0.50 -0.8
842,026 + Sama_0680 0.51 -1.9
842,027 - Sama_0680 0.51 -0.1
842,027 - Sama_0680 0.51 -0.5
842,068 + Sama_0680 0.53 -0.0
842,068 + Sama_0680 0.53 +0.8
842,068 + Sama_0680 0.53 -0.2
842,068 + Sama_0680 0.53 +1.7
842,069 - Sama_0680 0.54 -1.1
842,069 - Sama_0680 0.54 +0.1
842,069 - Sama_0680 0.54 -2.0
842,075 - Sama_0680 0.54 -0.9
842,088 - Sama_0680 0.55 +1.2
842,128 - Sama_0680 0.57 -0.3
842,289 + Sama_0680 0.68 +0.7
842,289 + Sama_0680 0.68 -0.5
842,290 - Sama_0680 0.68 +0.7
842,434 - Sama_0680 0.78 -1.8
842,560 + Sama_0680 0.86 -1.0
842,561 - Sama_0680 0.86 +0.7
842,561 - Sama_0680 0.86 +1.3
842,561 - Sama_0680 0.86 -0.3
842,561 - Sama_0680 0.86 -0.5
842,627 + +0.0
842,627 + -0.4
842,628 - +1.1
842,628 - +0.2
842,628 - +0.5
842,628 - +0.1
842,628 - +0.1
842,633 - -1.1
842,662 + +0.6
842,662 + -0.1
842,662 + -1.3
842,663 - +1.9
842,663 - +0.1
842,663 - -1.0
842,663 - -1.5
842,692 + -0.2
842,692 + -0.2
842,693 - -1.5
842,693 - -1.1
842,693 - -0.3
842,908 + -1.1
842,908 + -0.6
842,908 + +0.3
842,908 + -0.8
843,087 + Sama_0681 0.28 +0.7
843,087 + Sama_0681 0.28 +0.7
843,087 + Sama_0681 0.28 -0.2
843,087 + Sama_0681 0.28 -1.1
843,087 + Sama_0681 0.28 -0.8
843,087 + Sama_0681 0.28 -0.7
843,088 - Sama_0681 0.28 -2.1
843,088 - Sama_0681 0.28 -0.1
843,088 - Sama_0681 0.28 +0.2
843,088 - Sama_0681 0.28 -0.5
843,088 - Sama_0681 0.28 -1.0
843,088 - Sama_0681 0.28 -0.5
843,088 - Sama_0681 0.28 -0.3
843,088 - Sama_0681 0.28 -0.6
843,088 - Sama_0681 0.28 -0.8
843,103 + Sama_0681 0.30 +0.2
843,103 + Sama_0681 0.30 +0.3
843,104 - Sama_0681 0.31 -0.8
843,104 - Sama_0681 0.31 -1.1
843,104 - Sama_0681 0.31 -0.3
843,112 + Sama_0681 0.32 -0.5
843,112 + Sama_0681 0.32 -0.9
843,112 + Sama_0681 0.32 -1.7
843,115 + Sama_0681 0.32 -0.2
843,238 - Sama_0681 0.54 +0.2
843,251 + Sama_0681 0.56 +0.2
843,473 - -0.1
843,500 - -1.1
843,500 - -0.1
843,500 - -0.5
843,500 - -0.1
843,534 - +0.5
843,538 - -0.1
843,538 - +0.2
843,590 + +0.2
843,591 - -0.1
843,591 - +0.7
843,774 + Sama_0682 0.21 -0.7
843,774 + Sama_0682 0.21 -0.5
843,774 + Sama_0682 0.21 -0.6
843,774 + Sama_0682 0.21 -0.8
843,774 + Sama_0682 0.21 -0.8
843,774 + Sama_0682 0.21 +0.3
843,775 - Sama_0682 0.21 -1.1
843,775 - Sama_0682 0.21 +0.8
843,775 - Sama_0682 0.21 -0.6
843,807 + Sama_0682 0.25 +0.4
843,807 + Sama_0682 0.25 -0.2
843,807 + Sama_0682 0.25 -1.4
843,807 + Sama_0682 0.25 +0.9
843,807 + Sama_0682 0.25 +0.1
843,808 - Sama_0682 0.26 -0.1
843,808 - Sama_0682 0.26 -0.7
843,808 - Sama_0682 0.26 +0.5
843,808 - Sama_0682 0.26 -0.5
843,808 - Sama_0682 0.26 -0.0
843,815 + Sama_0682 0.27 -2.7
843,820 + Sama_0682 0.27 -0.4
843,820 + Sama_0682 0.27 +0.5
843,821 - Sama_0682 0.28 +0.2
843,829 + Sama_0682 0.29 -1.2
843,829 + Sama_0682 0.29 +1.1
843,895 + Sama_0682 0.39 -0.1
843,896 - Sama_0682 0.39 -0.5
843,968 - Sama_0682 0.49 -0.4
843,998 - Sama_0682 0.54 +0.4
844,007 - Sama_0682 0.55 +0.3
844,007 - Sama_0682 0.55 -1.6
844,051 - Sama_0682 0.62 -0.1
844,089 + Sama_0682 0.67 +0.5
844,089 + Sama_0682 0.67 +1.2
844,090 - Sama_0682 0.67 -0.9
844,104 + Sama_0682 0.69 -1.1
844,104 + Sama_0682 0.69 -0.1
844,105 - Sama_0682 0.70 +0.5
844,278 + +1.8
844,278 + +0.3
844,286 - -0.9
844,296 + +0.3
844,296 + +0.4
844,296 + +0.3
844,296 + -0.9
844,297 - -0.8
844,297 - -1.7
844,297 - -0.5
844,297 - -0.8
844,297 - -0.7
844,329 + -0.1
844,329 + -0.0
844,330 - -0.6
844,335 + +0.8
844,335 + +0.2
844,336 - +0.1
844,409 - Sama_0683 0.16 +0.3
844,409 - Sama_0683 0.16 +1.4
844,409 - Sama_0683 0.16 -0.9
844,409 - Sama_0683 0.16 -0.9
844,409 - Sama_0683 0.16 +0.2
844,481 + Sama_0683 0.41 -0.6

Or see this region's nucleotide sequence