Strain Fitness in Shewanella amazonensis SB2B around Sama_0314

Experiment: Sisomicin 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0313 and Sama_0314 are separated by 169 nucleotidesSama_0314 and Sama_0315 are separated by 546 nucleotides Sama_0313: Sama_0313 - DNA topoisomerase I (RefSeq), at 378,604 to 379,386 _0313 Sama_0314: Sama_0314 - hypothetical protein (RefSeq), at 379,556 to 379,834 _0314 Sama_0315: Sama_0315 - hypothetical protein (RefSeq), at 380,381 to 380,974 _0315 Position (kb) 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 378.566 kb on + strandat 378.567 kb on - strandat 378.567 kb on - strandat 378.567 kb on - strandat 378.622 kb on - strandat 378.622 kb on - strandat 378.622 kb on - strandat 378.622 kb on - strandat 378.633 kb on + strandat 378.633 kb on + strandat 378.749 kb on - strand, within Sama_0313at 378.749 kb on - strand, within Sama_0313at 378.781 kb on - strand, within Sama_0313at 378.803 kb on - strand, within Sama_0313at 378.807 kb on + strand, within Sama_0313at 378.807 kb on + strand, within Sama_0313at 378.808 kb on - strand, within Sama_0313at 378.808 kb on - strand, within Sama_0313at 378.808 kb on - strand, within Sama_0313at 378.839 kb on + strand, within Sama_0313at 378.839 kb on + strand, within Sama_0313at 378.839 kb on + strand, within Sama_0313at 378.840 kb on - strand, within Sama_0313at 378.840 kb on - strand, within Sama_0313at 378.857 kb on - strand, within Sama_0313at 378.902 kb on + strand, within Sama_0313at 378.902 kb on + strand, within Sama_0313at 378.902 kb on + strand, within Sama_0313at 378.902 kb on + strand, within Sama_0313at 378.902 kb on + strand, within Sama_0313at 378.902 kb on + strand, within Sama_0313at 378.903 kb on - strand, within Sama_0313at 378.903 kb on - strand, within Sama_0313at 378.903 kb on - strand, within Sama_0313at 378.930 kb on + strand, within Sama_0313at 378.930 kb on + strand, within Sama_0313at 378.988 kb on + strand, within Sama_0313at 378.988 kb on + strand, within Sama_0313at 378.989 kb on - strand, within Sama_0313at 378.989 kb on - strand, within Sama_0313at 378.989 kb on - strand, within Sama_0313at 379.017 kb on + strand, within Sama_0313at 379.017 kb on + strand, within Sama_0313at 379.090 kb on + strand, within Sama_0313at 379.091 kb on - strand, within Sama_0313at 379.100 kb on + strand, within Sama_0313at 379.100 kb on + strand, within Sama_0313at 379.100 kb on + strand, within Sama_0313at 379.101 kb on - strand, within Sama_0313at 379.101 kb on - strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.218 kb on + strand, within Sama_0313at 379.219 kb on - strand, within Sama_0313at 379.219 kb on - strand, within Sama_0313at 379.219 kb on - strand, within Sama_0313at 379.219 kb on - strand, within Sama_0313at 379.221 kb on - strand, within Sama_0313at 379.221 kb on - strand, within Sama_0313at 379.221 kb on - strand, within Sama_0313at 379.221 kb on - strand, within Sama_0313at 379.221 kb on - strand, within Sama_0313at 379.253 kb on - strand, within Sama_0313at 379.290 kb on + strand, within Sama_0313at 379.290 kb on + strand, within Sama_0313at 379.341 kb on - strandat 379.439 kb on + strandat 379.440 kb on - strandat 379.440 kb on - strandat 379.440 kb on - strandat 379.440 kb on - strandat 379.468 kb on - strandat 379.477 kb on - strandat 379.477 kb on - strandat 379.530 kb on + strandat 379.530 kb on + strandat 379.553 kb on + strandat 379.592 kb on + strand, within Sama_0314at 379.598 kb on - strand, within Sama_0314at 379.599 kb on + strand, within Sama_0314at 379.599 kb on + strand, within Sama_0314at 379.619 kb on - strand, within Sama_0314at 379.619 kb on - strand, within Sama_0314at 379.634 kb on + strand, within Sama_0314at 379.635 kb on - strand, within Sama_0314at 379.648 kb on + strand, within Sama_0314at 379.673 kb on + strand, within Sama_0314at 379.690 kb on - strand, within Sama_0314at 379.690 kb on - strand, within Sama_0314at 379.693 kb on + strand, within Sama_0314at 379.693 kb on + strand, within Sama_0314at 379.693 kb on + strand, within Sama_0314at 379.700 kb on - strand, within Sama_0314at 379.712 kb on + strand, within Sama_0314at 379.713 kb on - strand, within Sama_0314at 379.748 kb on - strand, within Sama_0314at 379.774 kb on + strand, within Sama_0314at 379.799 kb on - strand, within Sama_0314at 379.834 kb on + strandat 379.835 kb on - strandat 379.835 kb on - strandat 379.837 kb on - strandat 379.873 kb on + strandat 379.874 kb on - strandat 379.988 kb on - strandat 379.988 kb on - strandat 380.008 kb on + strandat 380.101 kb on + strandat 380.120 kb on - strandat 380.123 kb on - strandat 380.141 kb on + strandat 380.142 kb on - strandat 380.142 kb on - strandat 380.190 kb on + strandat 380.193 kb on + strandat 380.193 kb on + strandat 380.233 kb on + strandat 380.234 kb on - strandat 380.242 kb on + strandat 380.309 kb on + strandat 380.310 kb on - strandat 380.343 kb on - strandat 380.352 kb on + strandat 380.353 kb on - strandat 380.353 kb on - strandat 380.358 kb on + strandat 380.359 kb on - strandat 380.370 kb on + strandat 380.371 kb on - strandat 380.371 kb on - strandat 380.452 kb on + strand, within Sama_0315at 380.452 kb on + strand, within Sama_0315at 380.500 kb on + strand, within Sama_0315at 380.500 kb on + strand, within Sama_0315at 380.500 kb on + strand, within Sama_0315at 380.500 kb on + strand, within Sama_0315at 380.500 kb on + strand, within Sama_0315at 380.500 kb on + strand, within Sama_0315at 380.511 kb on + strand, within Sama_0315at 380.512 kb on - strand, within Sama_0315at 380.543 kb on + strand, within Sama_0315at 380.543 kb on + strand, within Sama_0315at 380.629 kb on - strand, within Sama_0315at 380.629 kb on - strand, within Sama_0315at 380.629 kb on - strand, within Sama_0315at 380.629 kb on - strand, within Sama_0315at 380.633 kb on - strand, within Sama_0315at 380.685 kb on + strand, within Sama_0315at 380.776 kb on + strand, within Sama_0315at 380.776 kb on + strand, within Sama_0315at 380.797 kb on + strand, within Sama_0315at 380.797 kb on + strand, within Sama_0315at 380.803 kb on + strand, within Sama_0315at 380.803 kb on + strand, within Sama_0315at 380.804 kb on - strand, within Sama_0315at 380.804 kb on - strand, within Sama_0315at 380.804 kb on - strand, within Sama_0315at 380.804 kb on - strand, within Sama_0315at 380.830 kb on + strand, within Sama_0315

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml
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378,566 + -0.4
378,567 - -0.1
378,567 - +0.4
378,567 - +2.9
378,622 - +0.6
378,622 - +0.3
378,622 - +1.1
378,622 - -1.7
378,633 + +0.5
378,633 + +0.2
378,749 - Sama_0313 0.19 -0.8
378,749 - Sama_0313 0.19 -0.1
378,781 - Sama_0313 0.23 +0.0
378,803 - Sama_0313 0.25 +0.2
378,807 + Sama_0313 0.26 -1.7
378,807 + Sama_0313 0.26 +1.8
378,808 - Sama_0313 0.26 -3.2
378,808 - Sama_0313 0.26 -0.9
378,808 - Sama_0313 0.26 -0.8
378,839 + Sama_0313 0.30 -1.6
378,839 + Sama_0313 0.30 -0.1
378,839 + Sama_0313 0.30 +0.7
378,840 - Sama_0313 0.30 +1.1
378,840 - Sama_0313 0.30 +0.7
378,857 - Sama_0313 0.32 -0.7
378,902 + Sama_0313 0.38 -0.6
378,902 + Sama_0313 0.38 -1.3
378,902 + Sama_0313 0.38 -0.0
378,902 + Sama_0313 0.38 -0.5
378,902 + Sama_0313 0.38 -0.6
378,902 + Sama_0313 0.38 -0.4
378,903 - Sama_0313 0.38 +1.5
378,903 - Sama_0313 0.38 +2.7
378,903 - Sama_0313 0.38 -1.9
378,930 + Sama_0313 0.42 +0.2
378,930 + Sama_0313 0.42 -0.6
378,988 + Sama_0313 0.49 -1.4
378,988 + Sama_0313 0.49 +0.1
378,989 - Sama_0313 0.49 -1.6
378,989 - Sama_0313 0.49 -0.2
378,989 - Sama_0313 0.49 +0.9
379,017 + Sama_0313 0.53 +0.4
379,017 + Sama_0313 0.53 -0.3
379,090 + Sama_0313 0.62 +0.5
379,091 - Sama_0313 0.62 +0.7
379,100 + Sama_0313 0.63 -1.5
379,100 + Sama_0313 0.63 +1.1
379,100 + Sama_0313 0.63 -0.6
379,101 - Sama_0313 0.63 -1.1
379,101 - Sama_0313 0.63 +0.5
379,218 + Sama_0313 0.78 +0.3
379,218 + Sama_0313 0.78 -2.1
379,218 + Sama_0313 0.78 +0.1
379,218 + Sama_0313 0.78 +0.5
379,218 + Sama_0313 0.78 -0.6
379,218 + Sama_0313 0.78 -0.9
379,218 + Sama_0313 0.78 +0.5
379,218 + Sama_0313 0.78 -0.3
379,218 + Sama_0313 0.78 -0.4
379,218 + Sama_0313 0.78 +0.1
379,219 - Sama_0313 0.79 +0.8
379,219 - Sama_0313 0.79 +0.7
379,219 - Sama_0313 0.79 +1.5
379,219 - Sama_0313 0.79 -1.4
379,221 - Sama_0313 0.79 +1.0
379,221 - Sama_0313 0.79 -0.7
379,221 - Sama_0313 0.79 +0.4
379,221 - Sama_0313 0.79 -0.6
379,221 - Sama_0313 0.79 -0.3
379,253 - Sama_0313 0.83 -0.2
379,290 + Sama_0313 0.88 +1.7
379,290 + Sama_0313 0.88 -1.1
379,341 - +1.7
379,439 + +0.3
379,440 - -1.1
379,440 - +0.1
379,440 - -0.7
379,440 - +0.0
379,468 - -1.1
379,477 - +0.1
379,477 - +0.8
379,530 + -0.4
379,530 + -0.1
379,553 + +0.1
379,592 + Sama_0314 0.13 +0.3
379,598 - Sama_0314 0.15 +0.1
379,599 + Sama_0314 0.15 -0.1
379,599 + Sama_0314 0.15 +0.4
379,619 - Sama_0314 0.23 +0.1
379,619 - Sama_0314 0.23 -0.7
379,634 + Sama_0314 0.28 +0.9
379,635 - Sama_0314 0.28 +0.7
379,648 + Sama_0314 0.33 -0.6
379,673 + Sama_0314 0.42 -0.8
379,690 - Sama_0314 0.48 +0.6
379,690 - Sama_0314 0.48 -0.3
379,693 + Sama_0314 0.49 +0.7
379,693 + Sama_0314 0.49 -1.0
379,693 + Sama_0314 0.49 +0.7
379,700 - Sama_0314 0.52 +0.4
379,712 + Sama_0314 0.56 +1.1
379,713 - Sama_0314 0.56 -1.0
379,748 - Sama_0314 0.69 -0.5
379,774 + Sama_0314 0.78 +0.5
379,799 - Sama_0314 0.87 +1.3
379,834 + -0.9
379,835 - -0.1
379,835 - -0.3
379,837 - +1.8
379,873 + +0.6
379,874 - +1.5
379,988 - -0.4
379,988 - +0.9
380,008 + -0.2
380,101 + +0.2
380,120 - -1.2
380,123 - +0.8
380,141 + +1.7
380,142 - +1.4
380,142 - -0.1
380,190 + +0.4
380,193 + +0.9
380,193 + +1.0
380,233 + -0.6
380,234 - +0.4
380,242 + -1.2
380,309 + +1.2
380,310 - -1.0
380,343 - +0.8
380,352 + +0.7
380,353 - +1.0
380,353 - -0.6
380,358 + +1.7
380,359 - -0.8
380,370 + -0.2
380,371 - +0.6
380,371 - +0.0
380,452 + Sama_0315 0.12 +0.1
380,452 + Sama_0315 0.12 +0.8
380,500 + Sama_0315 0.20 -0.6
380,500 + Sama_0315 0.20 +1.7
380,500 + Sama_0315 0.20 -1.2
380,500 + Sama_0315 0.20 +0.5
380,500 + Sama_0315 0.20 +0.0
380,500 + Sama_0315 0.20 +0.2
380,511 + Sama_0315 0.22 -0.5
380,512 - Sama_0315 0.22 -0.3
380,543 + Sama_0315 0.27 +0.9
380,543 + Sama_0315 0.27 +0.3
380,629 - Sama_0315 0.42 +0.7
380,629 - Sama_0315 0.42 -0.1
380,629 - Sama_0315 0.42 -0.6
380,629 - Sama_0315 0.42 -0.6
380,633 - Sama_0315 0.42 +0.9
380,685 + Sama_0315 0.51 +0.4
380,776 + Sama_0315 0.66 +0.2
380,776 + Sama_0315 0.66 -0.1
380,797 + Sama_0315 0.70 +0.4
380,797 + Sama_0315 0.70 +0.4
380,803 + Sama_0315 0.71 +1.0
380,803 + Sama_0315 0.71 +0.1
380,804 - Sama_0315 0.71 +0.7
380,804 - Sama_0315 0.71 -0.1
380,804 - Sama_0315 0.71 +0.7
380,804 - Sama_0315 0.71 -0.4
380,830 + Sama_0315 0.76 +0.6

Or see this region's nucleotide sequence