Experiment: Sisomicin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0269 and Sama_0270 are separated by 82 nucleotides Sama_0270 and Sama_0271 are separated by 83 nucleotides
Sama_0269: Sama_0269 - hypothetical protein (RefSeq), at 308,553 to 309,617
_0269
Sama_0270: Sama_0270 - prolipoprotein diacylglyceryl transferase (RefSeq), at 309,700 to 310,467
_0270
Sama_0271: Sama_0271 - hypothetical protein (RefSeq), at 310,551 to 312,026
_0271
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.747 kb on + strand, within Sama_0269 at 308.747 kb on + strand, within Sama_0269 at 308.747 kb on + strand, within Sama_0269 at 308.748 kb on - strand, within Sama_0269 at 308.784 kb on + strand, within Sama_0269 at 308.784 kb on + strand, within Sama_0269 at 308.785 kb on - strand, within Sama_0269 at 308.785 kb on - strand, within Sama_0269 at 308.785 kb on - strand, within Sama_0269 at 308.785 kb on - strand, within Sama_0269 at 308.874 kb on + strand, within Sama_0269 at 308.874 kb on + strand, within Sama_0269 at 308.875 kb on - strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.896 kb on + strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 308.897 kb on - strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.080 kb on + strand, within Sama_0269 at 309.081 kb on - strand, within Sama_0269 at 309.081 kb on - strand, within Sama_0269 at 309.081 kb on - strand, within Sama_0269 at 309.176 kb on + strand, within Sama_0269 at 309.209 kb on + strand, within Sama_0269 at 309.248 kb on + strand, within Sama_0269 at 309.249 kb on - strand, within Sama_0269 at 309.273 kb on + strand, within Sama_0269 at 309.274 kb on - strand, within Sama_0269 at 309.274 kb on - strand, within Sama_0269 at 309.274 kb on - strand, within Sama_0269 at 309.292 kb on + strand, within Sama_0269 at 309.293 kb on - strand, within Sama_0269 at 309.293 kb on - strand, within Sama_0269 at 309.293 kb on - strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.406 kb on + strand, within Sama_0269 at 309.407 kb on - strand, within Sama_0269 at 309.407 kb on - strand, within Sama_0269 at 309.407 kb on - strand, within Sama_0269 at 309.407 kb on - strand, within Sama_0269 at 309.407 kb on - strand, within Sama_0269 at 309.407 kb on - strand, within Sama_0269 at 309.452 kb on + strand, within Sama_0269 at 309.452 kb on + strand, within Sama_0269 at 309.452 kb on + strand, within Sama_0269 at 309.452 kb on + strand, within Sama_0269 at 309.452 kb on + strand, within Sama_0269 at 309.453 kb on - strand, within Sama_0269 at 309.453 kb on - strand, within Sama_0269 at 309.489 kb on + strand, within Sama_0269 at 309.489 kb on + strand, within Sama_0269 at 309.508 kb on - strand, within Sama_0269 at 309.508 kb on - strand, within Sama_0269 at 309.533 kb on + strand at 309.533 kb on + strand at 309.567 kb on + strand at 309.567 kb on + strand at 309.567 kb on + strand at 309.567 kb on + strand at 309.568 kb on - strand at 309.568 kb on - strand at 309.568 kb on - strand at 309.577 kb on + strand at 309.577 kb on + strand at 309.578 kb on - strand at 309.578 kb on - strand at 309.599 kb on + strand at 309.599 kb on + strand at 309.639 kb on + strand at 309.640 kb on - strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.679 kb on + strand at 309.680 kb on - strand at 309.680 kb on - strand at 309.680 kb on - strand at 309.699 kb on + strand at 309.699 kb on + strand at 309.699 kb on + strand at 309.699 kb on + strand at 309.700 kb on - strand at 309.700 kb on - strand at 309.700 kb on - strand at 309.700 kb on - strand at 309.700 kb on - strand at 309.723 kb on - strand at 309.781 kb on - strand, within Sama_0270 at 309.871 kb on - strand, within Sama_0270 at 309.881 kb on + strand, within Sama_0270 at 309.882 kb on - strand, within Sama_0270 at 309.882 kb on - strand, within Sama_0270 at 309.913 kb on + strand, within Sama_0270 at 309.914 kb on - strand, within Sama_0270 at 309.928 kb on + strand, within Sama_0270 at 309.928 kb on + strand, within Sama_0270 at 309.957 kb on + strand, within Sama_0270 at 309.957 kb on + strand, within Sama_0270 at 309.958 kb on - strand, within Sama_0270 at 310.041 kb on + strand, within Sama_0270 at 310.051 kb on + strand, within Sama_0270 at 310.052 kb on - strand, within Sama_0270 at 310.052 kb on - strand, within Sama_0270 at 310.052 kb on - strand, within Sama_0270 at 310.063 kb on + strand, within Sama_0270 at 310.101 kb on - strand, within Sama_0270 at 310.101 kb on - strand, within Sama_0270 at 310.210 kb on + strand, within Sama_0270 at 310.210 kb on + strand, within Sama_0270 at 310.220 kb on + strand, within Sama_0270 at 310.220 kb on + strand, within Sama_0270 at 310.220 kb on + strand, within Sama_0270 at 310.221 kb on - strand, within Sama_0270 at 310.225 kb on + strand, within Sama_0270 at 310.266 kb on + strand, within Sama_0270 at 310.266 kb on + strand, within Sama_0270 at 310.267 kb on - strand, within Sama_0270 at 310.267 kb on - strand, within Sama_0270 at 310.267 kb on - strand, within Sama_0270 at 310.267 kb on - strand, within Sama_0270 at 310.345 kb on - strand, within Sama_0270 at 310.363 kb on + strand, within Sama_0270 at 310.363 kb on + strand, within Sama_0270 at 310.425 kb on + strand at 310.426 kb on - strand at 310.426 kb on - strand at 310.482 kb on + strand at 310.482 kb on + strand at 310.482 kb on + strand at 310.483 kb on - strand at 310.513 kb on + strand at 310.514 kb on - strand at 310.564 kb on + strand at 310.579 kb on + strand at 310.580 kb on - strand at 310.580 kb on - strand at 310.580 kb on - strand at 310.580 kb on - strand at 310.580 kb on - strand at 310.644 kb on - strand at 310.644 kb on - strand at 310.690 kb on + strand at 310.690 kb on + strand at 310.690 kb on + strand at 310.691 kb on - strand at 310.691 kb on - strand at 310.745 kb on + strand, within Sama_0271 at 310.746 kb on - strand, within Sama_0271 at 310.772 kb on + strand, within Sama_0271 at 310.822 kb on + strand, within Sama_0271 at 310.823 kb on - strand, within Sama_0271 at 310.823 kb on - strand, within Sama_0271 at 310.886 kb on + strand, within Sama_0271 at 310.886 kb on + strand, within Sama_0271 at 310.977 kb on - strand, within Sama_0271 at 310.977 kb on - strand, within Sama_0271 at 310.996 kb on - strand, within Sama_0271 at 310.996 kb on - strand, within Sama_0271 at 311.007 kb on - strand, within Sama_0271 at 311.007 kb on - strand, within Sama_0271 at 311.009 kb on + strand, within Sama_0271 at 311.016 kb on - strand, within Sama_0271 at 311.016 kb on - strand, within Sama_0271 at 311.346 kb on + strand, within Sama_0271 at 311.347 kb on - strand, within Sama_0271 at 311.367 kb on - strand, within Sama_0271 at 311.367 kb on - strand, within Sama_0271 at 311.409 kb on + strand, within Sama_0271 at 311.409 kb on + strand, within Sama_0271 at 311.409 kb on + strand, within Sama_0271 at 311.409 kb on + strand, within Sama_0271 at 311.409 kb on + strand, within Sama_0271 at 311.409 kb on + strand, within Sama_0271 at 311.410 kb on - strand, within Sama_0271 at 311.410 kb on - strand, within Sama_0271 at 311.410 kb on - strand, within Sama_0271 at 311.410 kb on - strand, within Sama_0271 at 311.410 kb on - strand, within Sama_0271 at 311.410 kb on - strand, within Sama_0271 at 311.436 kb on + strand, within Sama_0271 at 311.437 kb on - strand, within Sama_0271 at 311.437 kb on - strand, within Sama_0271
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml remove 308,747 + Sama_0269 0.18 -0.5 308,747 + Sama_0269 0.18 +0.8 308,747 + Sama_0269 0.18 +0.2 308,748 - Sama_0269 0.18 +0.9 308,784 + Sama_0269 0.22 +1.1 308,784 + Sama_0269 0.22 -0.2 308,785 - Sama_0269 0.22 -0.3 308,785 - Sama_0269 0.22 -1.6 308,785 - Sama_0269 0.22 +0.9 308,785 - Sama_0269 0.22 -0.9 308,874 + Sama_0269 0.30 -0.5 308,874 + Sama_0269 0.30 +0.6 308,875 - Sama_0269 0.30 +0.7 308,896 + Sama_0269 0.32 -0.8 308,896 + Sama_0269 0.32 -0.6 308,896 + Sama_0269 0.32 -0.6 308,896 + Sama_0269 0.32 -0.2 308,896 + Sama_0269 0.32 +0.4 308,896 + Sama_0269 0.32 +0.2 308,896 + Sama_0269 0.32 -1.4 308,896 + Sama_0269 0.32 -0.2 308,896 + Sama_0269 0.32 -0.3 308,896 + Sama_0269 0.32 -0.2 308,896 + Sama_0269 0.32 -1.1 308,896 + Sama_0269 0.32 -1.8 308,896 + Sama_0269 0.32 -1.4 308,896 + Sama_0269 0.32 -2.0 308,896 + Sama_0269 0.32 -0.4 308,896 + Sama_0269 0.32 -0.5 308,897 - Sama_0269 0.32 +2.2 308,897 - Sama_0269 0.32 +0.9 308,897 - Sama_0269 0.32 -0.5 308,897 - Sama_0269 0.32 -0.3 308,897 - Sama_0269 0.32 +1.7 308,897 - Sama_0269 0.32 -0.9 308,897 - Sama_0269 0.32 +0.1 308,897 - Sama_0269 0.32 +0.7 308,897 - Sama_0269 0.32 -0.6 308,897 - Sama_0269 0.32 -0.5 309,080 + Sama_0269 0.49 -0.1 309,080 + Sama_0269 0.49 -0.3 309,080 + Sama_0269 0.49 +0.1 309,080 + Sama_0269 0.49 -0.1 309,080 + Sama_0269 0.49 -0.2 309,080 + Sama_0269 0.49 -1.3 309,080 + Sama_0269 0.49 -1.0 309,080 + Sama_0269 0.49 -0.7 309,081 - Sama_0269 0.50 -0.6 309,081 - Sama_0269 0.50 -0.5 309,081 - Sama_0269 0.50 -2.6 309,176 + Sama_0269 0.58 +1.2 309,209 + Sama_0269 0.62 -0.1 309,248 + Sama_0269 0.65 -0.2 309,249 - Sama_0269 0.65 -0.3 309,273 + Sama_0269 0.68 +0.6 309,274 - Sama_0269 0.68 -0.6 309,274 - Sama_0269 0.68 -0.9 309,274 - Sama_0269 0.68 -0.2 309,292 + Sama_0269 0.69 -1.6 309,293 - Sama_0269 0.69 -0.4 309,293 - Sama_0269 0.69 -1.5 309,293 - Sama_0269 0.69 -0.3 309,406 + Sama_0269 0.80 -1.9 309,406 + Sama_0269 0.80 -1.0 309,406 + Sama_0269 0.80 -0.6 309,406 + Sama_0269 0.80 -0.7 309,406 + Sama_0269 0.80 -0.2 309,406 + Sama_0269 0.80 -0.7 309,406 + Sama_0269 0.80 -0.5 309,406 + Sama_0269 0.80 +0.5 309,406 + Sama_0269 0.80 +0.6 309,407 - Sama_0269 0.80 +0.4 309,407 - Sama_0269 0.80 -0.3 309,407 - Sama_0269 0.80 +0.2 309,407 - Sama_0269 0.80 +0.3 309,407 - Sama_0269 0.80 +1.4 309,407 - Sama_0269 0.80 -0.3 309,452 + Sama_0269 0.84 -1.4 309,452 + Sama_0269 0.84 +0.4 309,452 + Sama_0269 0.84 -0.3 309,452 + Sama_0269 0.84 -0.6 309,452 + Sama_0269 0.84 -0.2 309,453 - Sama_0269 0.85 -0.5 309,453 - Sama_0269 0.85 -0.2 309,489 + Sama_0269 0.88 +0.0 309,489 + Sama_0269 0.88 +0.4 309,508 - Sama_0269 0.90 +0.6 309,508 - Sama_0269 0.90 -0.0 309,533 + +0.1 309,533 + -1.2 309,567 + -1.2 309,567 + +0.4 309,567 + -0.3 309,567 + -0.0 309,568 - +0.3 309,568 - -0.5 309,568 - -0.3 309,577 + -0.0 309,577 + -0.9 309,578 - -2.2 309,578 - +0.6 309,599 + -0.6 309,599 + +0.1 309,639 + +0.4 309,640 - -0.8 309,679 + -0.9 309,679 + +0.2 309,679 + -0.6 309,679 + +0.4 309,679 + -1.2 309,679 + +0.2 309,679 + -0.1 309,679 + -0.8 309,679 + +0.4 309,680 - -0.9 309,680 - +0.7 309,680 - -0.3 309,699 + -0.6 309,699 + -0.6 309,699 + -2.8 309,699 + -1.1 309,700 - +0.5 309,700 - -2.1 309,700 - -0.3 309,700 - +0.9 309,700 - -0.3 309,723 - -1.6 309,781 - Sama_0270 0.11 -0.9 309,871 - Sama_0270 0.22 +0.0 309,881 + Sama_0270 0.24 +0.1 309,882 - Sama_0270 0.24 -0.6 309,882 - Sama_0270 0.24 -1.1 309,913 + Sama_0270 0.28 -1.6 309,914 - Sama_0270 0.28 -1.1 309,928 + Sama_0270 0.30 +0.7 309,928 + Sama_0270 0.30 -0.6 309,957 + Sama_0270 0.33 -0.1 309,957 + Sama_0270 0.33 -2.8 309,958 - Sama_0270 0.34 -2.6 310,041 + Sama_0270 0.44 +0.9 310,051 + Sama_0270 0.46 -1.2 310,052 - Sama_0270 0.46 -1.8 310,052 - Sama_0270 0.46 -1.7 310,052 - Sama_0270 0.46 -0.2 310,063 + Sama_0270 0.47 -1.6 310,101 - Sama_0270 0.52 -1.6 310,101 - Sama_0270 0.52 -0.4 310,210 + Sama_0270 0.66 -1.1 310,210 + Sama_0270 0.66 -1.0 310,220 + Sama_0270 0.68 -2.9 310,220 + Sama_0270 0.68 -1.9 310,220 + Sama_0270 0.68 -0.9 310,221 - Sama_0270 0.68 -0.9 310,225 + Sama_0270 0.68 -1.2 310,266 + Sama_0270 0.74 -0.1 310,266 + Sama_0270 0.74 -0.5 310,267 - Sama_0270 0.74 -1.8 310,267 - Sama_0270 0.74 +0.7 310,267 - Sama_0270 0.74 -0.8 310,267 - Sama_0270 0.74 -0.9 310,345 - Sama_0270 0.84 +1.5 310,363 + Sama_0270 0.86 -2.0 310,363 + Sama_0270 0.86 -0.9 310,425 + -0.9 310,426 - -0.0 310,426 - -0.6 310,482 + +0.7 310,482 + -0.5 310,482 + -1.8 310,483 - +0.2 310,513 + -1.2 310,514 - +0.1 310,564 + +0.6 310,579 + -1.9 310,580 - -1.6 310,580 - -0.3 310,580 - +0.5 310,580 - -0.5 310,580 - -0.6 310,644 - +0.4 310,644 - +0.1 310,690 + +0.1 310,690 + +0.1 310,690 + +0.4 310,691 - -1.1 310,691 - +0.2 310,745 + Sama_0271 0.13 -0.9 310,746 - Sama_0271 0.13 +0.2 310,772 + Sama_0271 0.15 +1.1 310,822 + Sama_0271 0.18 -0.6 310,823 - Sama_0271 0.18 +0.6 310,823 - Sama_0271 0.18 -0.3 310,886 + Sama_0271 0.23 -1.5 310,886 + Sama_0271 0.23 -0.3 310,977 - Sama_0271 0.29 +0.2 310,977 - Sama_0271 0.29 -0.6 310,996 - Sama_0271 0.30 -1.1 310,996 - Sama_0271 0.30 +0.2 311,007 - Sama_0271 0.31 -1.6 311,007 - Sama_0271 0.31 -0.3 311,009 + Sama_0271 0.31 -0.1 311,016 - Sama_0271 0.32 -0.3 311,016 - Sama_0271 0.32 +0.1 311,346 + Sama_0271 0.54 -1.5 311,347 - Sama_0271 0.54 +0.1 311,367 - Sama_0271 0.55 -0.1 311,367 - Sama_0271 0.55 +0.0 311,409 + Sama_0271 0.58 +1.7 311,409 + Sama_0271 0.58 +0.3 311,409 + Sama_0271 0.58 +0.1 311,409 + Sama_0271 0.58 -0.7 311,409 + Sama_0271 0.58 -0.2 311,409 + Sama_0271 0.58 +0.5 311,410 - Sama_0271 0.58 -0.5 311,410 - Sama_0271 0.58 -0.1 311,410 - Sama_0271 0.58 -0.2 311,410 - Sama_0271 0.58 -0.3 311,410 - Sama_0271 0.58 -1.3 311,410 - Sama_0271 0.58 +0.1 311,436 + Sama_0271 0.60 -0.1 311,437 - Sama_0271 0.60 +0.0 311,437 - Sama_0271 0.60 +2.1
Or see this region's nucleotide sequence