Strain Fitness in Shewanella amazonensis SB2B around Sama_0046

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
49,028	+		Sama_0045	0.14	+0.5
49,028	+		Sama_0045	0.14	+1.7
49,028	+		Sama_0045	0.14	+1.7
49,028	+		Sama_0045	0.14	-0.4
49,029	-		Sama_0045	0.14	+0.0
49,029	-		Sama_0045	0.14	-0.3
49,029	-		Sama_0045	0.14	+0.4
49,029	-		Sama_0045	0.14	+0.4
49,051	-		Sama_0045	0.17	+0.4
49,060	+		Sama_0045	0.18	-2.2
49,061	-		Sama_0045	0.18	-0.0
49,164	+		Sama_0045	0.28	+0.7
49,164	+		Sama_0045	0.28	-0.4
49,165	-		Sama_0045	0.28	+0.4
49,165	-		Sama_0045	0.28	+1.3
49,366	+		Sama_0045	0.48	-0.0
49,367	-		Sama_0045	0.48	-0.6
49,442	+		Sama_0045	0.55	-0.8
49,442	+		Sama_0045	0.55	-1.1
49,443	-		Sama_0045	0.55	+1.7
49,443	-		Sama_0045	0.55	-0.6
49,443	-		Sama_0045	0.55	+0.7
49,443	-		Sama_0045	0.55	+0.5
49,443	-		Sama_0045	0.55	+0.1
49,466	+		Sama_0045	0.57	-0.3
49,467	-		Sama_0045	0.58	-0.5
49,564	+		Sama_0045	0.67	-1.2
49,613	-		Sama_0045	0.72	-0.2
49,637	+		Sama_0045	0.74	-1.1
49,637	+		Sama_0045	0.74	-0.0
49,638	-		Sama_0045	0.74	-0.4
49,638	-		Sama_0045	0.74	+0.5
49,639	+		Sama_0045	0.74	-0.0
49,639	+		Sama_0045	0.74	+0.7
49,639	+		Sama_0045	0.74	+0.3
49,639	+		Sama_0045	0.74	-0.1
49,639	+		Sama_0045	0.74	+0.8
49,640	-		Sama_0045	0.75	+1.0
49,640	-		Sama_0045	0.75	-0.2
49,640	-		Sama_0045	0.75	+0.6
49,640	-		Sama_0045	0.75	-0.6
49,640	-		Sama_0045	0.75	-0.7
49,640	-		Sama_0045	0.75	-0.4
49,651	+		Sama_0045	0.76	-0.9
49,651	+		Sama_0045	0.76	+0.4
49,652	-		Sama_0045	0.76	-0.1
49,652	-		Sama_0045	0.76	+0.7
49,658	+		Sama_0045	0.76	+1.0
49,658	+		Sama_0045	0.76	-1.6
49,658	+		Sama_0045	0.76	+0.7
49,658	+		Sama_0045	0.76	-0.6
49,658	+		Sama_0045	0.76	-0.3
49,659	-		Sama_0045	0.76	-0.7
49,659	-		Sama_0045	0.76	-0.9
49,659	-		Sama_0045	0.76	-0.4
49,659	-		Sama_0045	0.76	-0.3
49,659	-		Sama_0045	0.76	+0.5
49,659	-		Sama_0045	0.76	-0.5
49,659	-		Sama_0045	0.76	-0.3
49,659	-		Sama_0045	0.76	+0.5
49,659	-		Sama_0045	0.76	-1.2
49,659	-		Sama_0045	0.76	-0.5
49,679	+		Sama_0045	0.78	+0.2
49,679	+		Sama_0045	0.78	+1.3
49,679	+		Sama_0045	0.78	-0.1
49,679	+		Sama_0045	0.78	-0.5
49,679	+		Sama_0045	0.78	+0.2
49,679	+		Sama_0045	0.78	-0.3
49,679	+		Sama_0045	0.78	-1.3
49,679	+		Sama_0045	0.78	+2.6
49,679	+		Sama_0045	0.78	-0.1
49,679	+		Sama_0045	0.78	+0.2
49,679	+		Sama_0045	0.78	-0.1
49,680	-		Sama_0045	0.78	-0.5
49,680	-		Sama_0045	0.78	+0.1
49,680	-		Sama_0045	0.78	-0.3
49,680	-		Sama_0045	0.78	-0.5
49,680	-		Sama_0045	0.78	-1.1
49,680	-		Sama_0045	0.78	-0.3
49,680	-		Sama_0045	0.78	-1.1
49,680	-		Sama_0045	0.78	-0.5
49,680	-		Sama_0045	0.78	-0.7
49,680	-		Sama_0045	0.78	-1.2
49,680	-		Sama_0045	0.78	-0.3
49,680	-		Sama_0045	0.78	-0.1
49,680	-		Sama_0045	0.78	+0.1
49,700	+		Sama_0045	0.80	+0.4
49,700	+		Sama_0045	0.80	-0.1
49,700	+		Sama_0045	0.80	+0.3
49,701	-		Sama_0045	0.81	+0.7
49,748	+		Sama_0045	0.85	+0.7
49,749	-		Sama_0045	0.85	+0.4
49,753	+		Sama_0045	0.86	+0.4
49,753	+		Sama_0045	0.86	-0.4
49,753	+		Sama_0045	0.86	-0.2
49,753	+		Sama_0045	0.86	-0.1
49,753	+		Sama_0045	0.86	+0.1
49,753	+		Sama_0045	0.86	+0.3
49,754	-		Sama_0045	0.86	-0.0
49,754	-		Sama_0045	0.86	-0.8
49,754	-		Sama_0045	0.86	-1.1
49,754	-		Sama_0045	0.86	+0.3
49,754	-		Sama_0045	0.86	+1.4
49,754	-		Sama_0045	0.86	+0.8
49,758	+		Sama_0045	0.86	-0.4
49,758	+		Sama_0045	0.86	-0.1
49,758	+		Sama_0045	0.86	-0.1
49,758	+		Sama_0045	0.86	-0.7
49,758	+		Sama_0045	0.86	-1.5
49,759	-		Sama_0045	0.86	+0.0
49,774	+		Sama_0045	0.88	-1.2
49,775	-		Sama_0045	0.88	+0.4
49,775	-		Sama_0045	0.88	+0.4
49,775	-		Sama_0045	0.88	+0.0
49,793	+		Sama_0045	0.90	+0.7
49,793	+		Sama_0045	0.90	+0.1
49,793	+		Sama_0045	0.90	-0.5
49,793	+		Sama_0045	0.90	+0.2
49,793	+		Sama_0045	0.90	+0.1
49,800	-				+0.9
49,828	+				-0.9
49,828	+				+0.4
49,828	+				-0.1
49,829	-				+1.1
49,864	+				-0.8
49,875	+				-0.2
49,875	+				-2.0
49,896	+				-0.4
49,896	+				+1.1
49,896	+				+1.7
49,897	-				-0.6
49,897	-				-0.4
49,897	-				+0.1
49,897	-				+0.0
49,919	+				-0.9
49,919	+				+1.2
49,919	+				+1.0
49,919	+				+0.4
49,919	+				-0.9
49,919	+				-0.6
49,919	+				-2.1
49,919	+				+0.3
49,919	+				+1.5
49,919	+				-0.2
49,919	+				-0.5
49,919	+				-0.0
49,920	-				-1.1
49,920	-				-0.6
49,920	-				+0.4
49,920	-				-2.1
49,920	-				+0.1
49,923	+				-0.3
49,923	+				+0.9
49,923	+				+0.3
49,923	+				-0.5
49,934	+				-0.1
49,934	+				-0.7
49,934	+				+0.4
49,934	+				-0.2
49,934	+				+0.3
49,934	+				+1.7
49,934	+				+0.1
49,934	+				+1.7
49,934	+				-0.2
49,934	+				-0.4
49,934	+				-0.8
49,934	+				-0.6
49,934	+				+1.4
49,935	-				-0.9
49,935	-				+0.1
49,935	-				-0.5
49,935	-				-1.0
49,935	-				-0.7
49,935	-				+0.1
49,935	-				+0.5
49,935	-				-2.1
49,935	-				-0.5
50,029	+		Sama_0046	0.27	+1.0
50,029	+		Sama_0046	0.27	-1.3
50,030	-		Sama_0046	0.27	-0.9
50,030	-		Sama_0046	0.27	-0.0
50,084	+		Sama_0046	0.38	-0.4
50,084	+		Sama_0046	0.38	+0.6
50,084	+		Sama_0046	0.38	-1.6
50,084	+		Sama_0046	0.38	+0.6
50,084	+		Sama_0046	0.38	-0.9
50,085	-		Sama_0046	0.38	-0.2
50,085	-		Sama_0046	0.38	-1.1
50,120	+		Sama_0046	0.46	-0.9
50,120	+		Sama_0046	0.46	-0.3
50,120	+		Sama_0046	0.46	+1.1
50,120	+		Sama_0046	0.46	-0.9
50,120	+		Sama_0046	0.46	+0.4
50,120	+		Sama_0046	0.46	-0.5
50,120	+		Sama_0046	0.46	+0.8
50,120	+		Sama_0046	0.46	+0.1
50,120	+		Sama_0046	0.46	-0.4
50,120	+		Sama_0046	0.46	-1.0
50,120	+		Sama_0046	0.46	+0.5
50,120	+		Sama_0046	0.46	+0.3
50,120	+		Sama_0046	0.46	-0.1
50,120	+		Sama_0046	0.46	-1.5
50,120	+		Sama_0046	0.46	-0.4
50,121	-		Sama_0046	0.46	+1.1
50,121	-		Sama_0046	0.46	-1.5
50,121	-		Sama_0046	0.46	-0.8
50,121	-		Sama_0046	0.46	-0.1
50,121	-		Sama_0046	0.46	-1.3
50,121	-		Sama_0046	0.46	-0.1
50,122	+		Sama_0046	0.46	+0.4
50,122	+		Sama_0046	0.46	-0.0
50,123	-		Sama_0046	0.46	+0.5
50,123	-		Sama_0046	0.46	-0.3
50,123	-		Sama_0046	0.46	-0.3
50,123	-		Sama_0046	0.46	-1.2
50,123	-		Sama_0046	0.46	-0.5
50,123	-		Sama_0046	0.46	-0.2
50,123	-		Sama_0046	0.46	-0.1
50,123	-		Sama_0046	0.46	-0.5
50,123	-		Sama_0046	0.46	+0.2
50,123	-		Sama_0046	0.46	-0.1
50,123	-		Sama_0046	0.46	+1.9
50,170	+		Sama_0046	0.56	-0.5
50,170	+		Sama_0046	0.56	-1.1
50,171	-		Sama_0046	0.56	+0.3
50,171	-		Sama_0046	0.56	-0.3
50,171	-		Sama_0046	0.56	-1.4
50,171	-		Sama_0046	0.56	+0.4
50,171	-		Sama_0046	0.56	-0.3
50,171	-		Sama_0046	0.56	+0.1
50,187	+		Sama_0046	0.60	-1.0
50,187	+		Sama_0046	0.60	-0.6
50,187	+		Sama_0046	0.60	-1.0
50,187	+		Sama_0046	0.60	-0.1
50,188	-		Sama_0046	0.60	+0.7
50,188	-		Sama_0046	0.60	-1.0
50,324	+		Sama_0046	0.88	-0.2
50,325	-		Sama_0046	0.88	+0.5
50,341	+				+0.9
50,398	+				+0.3
50,399	-				-0.4
50,437	+				+0.1
50,437	+				+1.2
50,437	+				-0.4
50,437	+				+0.3
50,437	+				+0.1
50,437	+				+1.1
50,438	-				-0.4
50,438	-				-0.3
50,438	-				-0.1
50,438	-				+0.6
50,438	-				-0.2
50,438	-				-0.4
50,454	+				+0.4
50,455	-				+0.4
50,455	-				-0.2
50,493	+		Sama_0047	0.12	+0.6
50,493	+		Sama_0047	0.12	-0.7
50,493	+		Sama_0047	0.12	+0.4
50,493	+		Sama_0047	0.12	+0.0
50,494	-		Sama_0047	0.12	+0.1
50,494	-		Sama_0047	0.12	-1.2
50,495	+		Sama_0047	0.12	-1.1
50,496	-		Sama_0047	0.13	+0.1
50,496	-		Sama_0047	0.13	-0.0
50,496	-		Sama_0047	0.13	+0.9
50,496	-		Sama_0047	0.13	+0.1
50,537	+		Sama_0047	0.28	-0.5
50,537	+		Sama_0047	0.28	+0.2
50,537	+		Sama_0047	0.28	+1.1
50,537	+		Sama_0047	0.28	+0.4
50,537	+		Sama_0047	0.28	+1.0
50,537	+		Sama_0047	0.28	-0.7
50,537	+		Sama_0047	0.28	-0.3
50,537	+		Sama_0047	0.28	+1.2
50,537	+		Sama_0047	0.28	-0.7
50,537	+		Sama_0047	0.28	+0.9
50,538	-		Sama_0047	0.28	+0.7
50,538	-		Sama_0047	0.28	-0.1
50,538	-		Sama_0047	0.28	+0.3
50,538	-		Sama_0047	0.28	+0.5
50,538	-		Sama_0047	0.28	-0.5
50,541	+		Sama_0047	0.30	+0.3
50,541	+		Sama_0047	0.30	+0.4
50,541	+		Sama_0047	0.30	+1.1
50,541	+		Sama_0047	0.30	+0.4
50,550	+		Sama_0047	0.33	-2.3
50,550	+		Sama_0047	0.33	-0.0
50,551	-		Sama_0047	0.33	+0.4
50,557	-		Sama_0047	0.36	-0.3
50,685	+		Sama_0047	0.84	-0.5
50,685	+		Sama_0047	0.84	+0.7
50,686	-		Sama_0047	0.84	-1.3
50,686	-		Sama_0047	0.84	+0.2
50,686	-		Sama_0047	0.84	-1.6
50,686	-		Sama_0047	0.84	-0.5
50,686	-		Sama_0047	0.84	-0.2
50,686	-		Sama_0047	0.84	+0.1
50,686	-		Sama_0047	0.84	-0.3
50,697	+		Sama_0047	0.88	-0.1
50,698	-		Sama_0047	0.88	+0.1
50,708	+				-0.0
50,708	+				-1.3
50,711	+				+0.2
50,711	+				-0.5
50,711	+				+0.5
50,746	-				-0.2
50,746	-				-0.4
50,748	+				-0.2
50,749	-				-0.5
50,773	+				-2.2
50,773	+				+0.3
50,812	+				-0.0
50,812	+				+0.2
50,812	+				+1.7
50,812	+				+0.1
50,812	+				-0.7
50,812	+				+1.0
50,813	-				+0.5
50,813	-				-0.3
50,813	-				-0.5
50,818	+				+1.0
50,819	-				-1.5
50,830	+				-0.1
50,830	+				+0.0
50,830	+				+0.9
50,830	+				-0.6
50,830	+				-0.2
50,830	+				+0.3
50,830	+				-0.1
50,831	-				+0.3
50,831	-				+0.3
50,831	-				-0.1
50,899	+				+0.8
50,899	+				+1.5
50,899	+				+0.2
50,899	+				-0.4
50,900	-				-0.2
50,900	-				-0.4
50,900	-				+0.3
50,905	+				+0.3
50,906	-				-0.3
50,906	-				-0.6
50,906	-				-1.1
50,973	+				+0.0
50,973	+				-1.0
50,974	-				-0.3
50,974	-				+0.7
50,974	-				+0.3
50,974	-				-0.1
50,974	-				-0.3
51,009	-				+0.7
51,027	+				-0.5
51,027	+				-0.0
51,027	+				+0.1
51,028	-				-0.3
51,028	-				-0.4
51,028	-				-0.1
51,028	-				-0.3
51,028	-				-0.1
51,047	+				-1.2
51,047	+				-0.1
51,047	+				+0.9
51,047	+				+0.2
51,047	+				-0.2
51,048	-				-0.3
51,048	-				+0.5
51,054	-				+0.1
51,063	-				-0.9
51,066	+				-1.7
51,067	+				+2.3
51,067	+				+0.1
51,067	+				+0.6
51,067	+				+0.4
51,067	+				+0.1
51,067	+				+0.0
51,067	+				-1.2
51,067	+				-1.0
51,067	+				-0.4
51,067	+				-0.2
51,067	+				+0.1
51,067	+				-0.5
51,067	+				-0.9
51,067	+				-1.2
51,067	+				+1.1
51,067	+				-1.3
51,068	-				-0.1
51,068	-				-0.5
51,068	-				-0.6
51,068	-				+0.2
51,068	-				+0.3
51,068	-				+2.2
51,068	-				-0.4
51,068	-				+0.0
51,068	-				+0.6
51,068	-				+1.5
51,068	-				+0.9
51,068	-				-0.3
51,068	-				+0.1
51,068	-				-1.0
51,068	-				+0.1
51,068	-				+0.1
51,068	-				+0.8
51,068	-				+0.8
51,068	-				-0.4
51,068	-				+0.3
51,069	+				-1.1
51,069	+				-1.3
51,069	+				-0.4
51,069	+				-1.5
51,069	+				-0.2
51,069	+				-1.1
51,069	+				+0.5
51,069	+				+0.8
51,069	+				-0.3
51,069	+				+1.2
51,069	+				+0.8
51,069	+				+0.4
51,069	+				+0.3
51,070	-				-0.1
51,070	-				+0.4
51,070	-				-1.1
51,070	-				-0.8
51,070	-				+2.7
51,070	-				-0.1
51,070	-				+0.1
51,111	+				-0.7
51,111	+				-0.1
51,112	-				-0.5
51,112	-				+0.5
51,127	+				-0.7
51,127	+				-0.5
51,127	+				+0.2
51,128	-				-0.2
51,128	-				+0.6
51,128	-				+0.0
51,128	-				-0.2
51,138	+				+0.7
51,139	-				-0.6
51,139	-				-0.1
51,149	+				+0.4
51,149	+				+0.1
51,149	+				-0.5
51,149	+				+0.7
51,149	+				+0.3
51,150	-				+1.0
51,150	-				-1.3
51,150	-				-0.4
51,166	+				-0.1
51,166	+				-0.3
51,166	+				+0.3
51,167	-				-0.3
51,167	-				+0.2
51,167	-				-0.3
51,167	-				-0.3
51,171	+				+0.1
51,172	-				-0.6
51,172	-				+0.7
51,172	-				+0.4
51,188	+				+0.6
51,189	-				-0.5
51,189	-				+0.3
51,218	+				+0.3
51,218	+				-0.3
51,219	-				-1.1
51,248	+				+1.0
51,249	-				+0.2
51,249	-				+0.7
51,249	-				-2.1
51,249	-				+0.8
51,249	-				+1.0
51,258	+				+0.3
51,258	+				-0.3
51,259	-				+0.6
51,263	+				-1.4
51,263	+				-0.4
51,279	-				+0.2
51,280	-				+0.1
51,280	-				+1.0
51,280	-				+0.3
51,300	+				+0.5
51,300	+				+2.1
51,300	+				+0.3
51,300	+				+1.1
51,301	-				-0.2
51,301	-				+0.7