Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09840

Experiment: m.b. Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09830 and PGA1_c09840 are separated by 280 nucleotidesPGA1_c09840 and PGA1_c09850 are separated by 232 nucleotides PGA1_c09830: PGA1_c09830 - hypothetical protein, at 1,012,864 to 1,013,583 _c09830 PGA1_c09840: PGA1_c09840 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 1,013,864 to 1,015,378 _c09840 PGA1_c09850: PGA1_c09850 - S1 domain-containing protein, at 1,015,611 to 1,017,977 _c09850 Position (kb) 1013 1014 1015 1016Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1012.865 kb on - strandat 1012.931 kb on + strandat 1012.953 kb on + strand, within PGA1_c09830at 1013.051 kb on - strand, within PGA1_c09830at 1013.147 kb on - strand, within PGA1_c09830at 1013.154 kb on + strand, within PGA1_c09830at 1013.162 kb on - strand, within PGA1_c09830at 1013.185 kb on - strand, within PGA1_c09830at 1013.235 kb on - strand, within PGA1_c09830at 1013.267 kb on + strand, within PGA1_c09830at 1013.296 kb on + strand, within PGA1_c09830at 1013.299 kb on - strand, within PGA1_c09830at 1013.304 kb on - strand, within PGA1_c09830at 1013.329 kb on - strand, within PGA1_c09830at 1013.329 kb on - strand, within PGA1_c09830at 1013.368 kb on + strand, within PGA1_c09830at 1013.445 kb on + strand, within PGA1_c09830at 1013.462 kb on + strand, within PGA1_c09830at 1013.470 kb on - strand, within PGA1_c09830at 1013.516 kb on + strandat 1013.525 kb on + strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.637 kb on - strandat 1013.637 kb on - strandat 1013.646 kb on + strandat 1013.646 kb on + strandat 1013.653 kb on + strandat 1013.654 kb on - strandat 1013.730 kb on - strandat 1013.732 kb on + strandat 1013.734 kb on + strandat 1013.735 kb on - strandat 1013.740 kb on - strandat 1013.740 kb on - strandat 1013.740 kb on - strandat 1013.740 kb on - strandat 1013.742 kb on - strandat 1013.742 kb on - strandat 1013.769 kb on + strandat 1013.784 kb on - strandat 1013.814 kb on + strandat 1015.446 kb on + strandat 1015.448 kb on - strandat 1015.513 kb on + strandat 1015.513 kb on + strandat 1015.521 kb on - strandat 1015.521 kb on - strandat 1015.521 kb on - strandat 1015.521 kb on - strandat 1015.521 kb on - strandat 1015.524 kb on + strandat 1015.532 kb on - strandat 1015.600 kb on - strandat 1015.608 kb on + strandat 1015.613 kb on + strandat 1015.673 kb on + strandat 1015.692 kb on - strandat 1015.692 kb on - strandat 1015.785 kb on - strandat 1015.892 kb on + strand, within PGA1_c09850at 1015.898 kb on + strand, within PGA1_c09850at 1015.906 kb on - strand, within PGA1_c09850at 1015.939 kb on - strand, within PGA1_c09850at 1015.991 kb on + strand, within PGA1_c09850at 1016.020 kb on - strand, within PGA1_c09850at 1016.050 kb on - strand, within PGA1_c09850at 1016.050 kb on - strand, within PGA1_c09850at 1016.055 kb on - strand, within PGA1_c09850at 1016.133 kb on + strand, within PGA1_c09850at 1016.141 kb on - strand, within PGA1_c09850at 1016.164 kb on + strand, within PGA1_c09850at 1016.170 kb on - strand, within PGA1_c09850at 1016.179 kb on - strand, within PGA1_c09850at 1016.186 kb on + strand, within PGA1_c09850at 1016.194 kb on - strand, within PGA1_c09850at 1016.202 kb on + strand, within PGA1_c09850at 1016.210 kb on - strand, within PGA1_c09850at 1016.238 kb on - strand, within PGA1_c09850at 1016.283 kb on + strand, within PGA1_c09850at 1016.293 kb on + strand, within PGA1_c09850at 1016.301 kb on - strand, within PGA1_c09850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM
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1,012,865 - -0.0
1,012,931 + +0.1
1,012,953 + PGA1_c09830 0.12 -1.3
1,013,051 - PGA1_c09830 0.26 -1.2
1,013,147 - PGA1_c09830 0.39 +1.6
1,013,154 + PGA1_c09830 0.40 -1.4
1,013,162 - PGA1_c09830 0.41 -0.6
1,013,185 - PGA1_c09830 0.45 +0.4
1,013,235 - PGA1_c09830 0.52 -1.1
1,013,267 + PGA1_c09830 0.56 -1.1
1,013,296 + PGA1_c09830 0.60 +0.7
1,013,299 - PGA1_c09830 0.60 +0.8
1,013,304 - PGA1_c09830 0.61 -1.2
1,013,329 - PGA1_c09830 0.65 -1.9
1,013,329 - PGA1_c09830 0.65 -3.2
1,013,368 + PGA1_c09830 0.70 -0.9
1,013,445 + PGA1_c09830 0.81 +0.1
1,013,462 + PGA1_c09830 0.83 +0.0
1,013,470 - PGA1_c09830 0.84 +1.3
1,013,516 + +0.5
1,013,525 + -0.7
1,013,533 - -2.0
1,013,533 - +0.5
1,013,533 - -0.7
1,013,533 - -1.5
1,013,533 - -0.9
1,013,533 - -0.8
1,013,637 - +1.0
1,013,637 - +1.3
1,013,646 + -0.3
1,013,646 + -0.0
1,013,653 + -0.4
1,013,654 - -1.6
1,013,730 - -1.0
1,013,732 + -2.0
1,013,734 + +1.0
1,013,735 - +1.2
1,013,740 - +0.3
1,013,740 - -0.2
1,013,740 - +0.4
1,013,740 - +0.5
1,013,742 - -1.0
1,013,742 - -3.5
1,013,769 + -1.5
1,013,784 - -0.0
1,013,814 + -2.0
1,015,446 + +2.3
1,015,448 - -0.3
1,015,513 + -0.3
1,015,513 + -0.3
1,015,521 - -0.3
1,015,521 - -3.0
1,015,521 - +2.6
1,015,521 - +0.1
1,015,521 - -1.0
1,015,524 + -0.0
1,015,532 - +0.3
1,015,600 - +1.5
1,015,608 + +0.6
1,015,613 + -0.9
1,015,673 + +1.4
1,015,692 - -0.3
1,015,692 - +0.7
1,015,785 - +0.8
1,015,892 + PGA1_c09850 0.12 +0.8
1,015,898 + PGA1_c09850 0.12 -3.8
1,015,906 - PGA1_c09850 0.12 -1.4
1,015,939 - PGA1_c09850 0.14 +0.8
1,015,991 + PGA1_c09850 0.16 -2.6
1,016,020 - PGA1_c09850 0.17 +1.1
1,016,050 - PGA1_c09850 0.19 -0.3
1,016,050 - PGA1_c09850 0.19 +1.7
1,016,055 - PGA1_c09850 0.19 +2.1
1,016,133 + PGA1_c09850 0.22 -1.4
1,016,141 - PGA1_c09850 0.22 -0.3
1,016,164 + PGA1_c09850 0.23 +0.3
1,016,170 - PGA1_c09850 0.24 +1.1
1,016,179 - PGA1_c09850 0.24 -0.4
1,016,186 + PGA1_c09850 0.24 -1.0
1,016,194 - PGA1_c09850 0.25 -1.1
1,016,202 + PGA1_c09850 0.25 -0.8
1,016,210 - PGA1_c09850 0.25 +0.3
1,016,238 - PGA1_c09850 0.26 +0.3
1,016,283 + PGA1_c09850 0.28 -1.8
1,016,293 + PGA1_c09850 0.29 +0.0
1,016,301 - PGA1_c09850 0.29 -0.0

Or see this region's nucleotide sequence