Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05300

Experiment: m.b. Chloride 600 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c05290 and PGA1_c05300 are separated by 144 nucleotidesPGA1_c05300 and PGA1_c05310 are separated by 18 nucleotidesPGA1_c05310 and PGA1_c05320 overlap by 4 nucleotides PGA1_c05290: PGA1_c05290 - polysaccharide biosynthesis protein ExoT-like protein, at 524,993 to 526,357 _c05290 PGA1_c05300: PGA1_c05300 - putative glycosyl transferase, at 526,502 to 527,719 _c05300 PGA1_c05310: PGA1_c05310 - putative glycosyl transferase, at 527,738 to 528,580 _c05310 PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147 _c05320 Position (kb) 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 525.503 kb on - strand, within PGA1_c05290at 525.509 kb on - strand, within PGA1_c05290at 525.541 kb on + strand, within PGA1_c05290at 525.548 kb on + strand, within PGA1_c05290at 525.549 kb on - strand, within PGA1_c05290at 525.556 kb on - strand, within PGA1_c05290at 525.596 kb on + strand, within PGA1_c05290at 525.613 kb on + strand, within PGA1_c05290at 525.626 kb on - strand, within PGA1_c05290at 525.628 kb on + strand, within PGA1_c05290at 525.674 kb on - strand, within PGA1_c05290at 525.712 kb on - strand, within PGA1_c05290at 525.754 kb on + strand, within PGA1_c05290at 525.762 kb on - strand, within PGA1_c05290at 525.796 kb on - strand, within PGA1_c05290at 525.798 kb on - strand, within PGA1_c05290at 525.836 kb on + strand, within PGA1_c05290at 525.844 kb on - strand, within PGA1_c05290at 525.888 kb on - strand, within PGA1_c05290at 525.924 kb on + strand, within PGA1_c05290at 525.940 kb on + strand, within PGA1_c05290at 525.943 kb on - strand, within PGA1_c05290at 525.953 kb on - strand, within PGA1_c05290at 525.984 kb on + strand, within PGA1_c05290at 525.984 kb on + strand, within PGA1_c05290at 525.986 kb on + strand, within PGA1_c05290at 525.992 kb on - strand, within PGA1_c05290at 525.992 kb on - strand, within PGA1_c05290at 526.029 kb on + strand, within PGA1_c05290at 526.029 kb on + strand, within PGA1_c05290at 526.029 kb on + strand, within PGA1_c05290at 526.036 kb on - strand, within PGA1_c05290at 526.037 kb on - strand, within PGA1_c05290at 526.037 kb on - strand, within PGA1_c05290at 526.037 kb on - strand, within PGA1_c05290at 526.062 kb on - strand, within PGA1_c05290at 526.080 kb on - strand, within PGA1_c05290at 526.116 kb on + strand, within PGA1_c05290at 526.116 kb on + strand, within PGA1_c05290at 526.182 kb on + strand, within PGA1_c05290at 526.185 kb on - strand, within PGA1_c05290at 526.187 kb on + strand, within PGA1_c05290at 526.190 kb on - strand, within PGA1_c05290at 526.285 kb on - strandat 526.304 kb on - strandat 526.330 kb on - strandat 526.346 kb on + strandat 526.390 kb on + strandat 526.437 kb on - strandat 526.532 kb on - strandat 526.535 kb on - strandat 526.573 kb on - strandat 526.579 kb on - strandat 526.593 kb on - strandat 526.660 kb on + strand, within PGA1_c05300at 526.660 kb on + strand, within PGA1_c05300at 526.663 kb on - strand, within PGA1_c05300at 526.663 kb on - strand, within PGA1_c05300at 526.668 kb on + strand, within PGA1_c05300at 526.671 kb on + strand, within PGA1_c05300at 526.752 kb on - strand, within PGA1_c05300at 526.759 kb on + strand, within PGA1_c05300at 526.925 kb on + strand, within PGA1_c05300at 526.932 kb on - strand, within PGA1_c05300at 526.939 kb on + strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 526.988 kb on - strand, within PGA1_c05300at 527.083 kb on - strand, within PGA1_c05300at 527.085 kb on + strand, within PGA1_c05300at 527.093 kb on + strand, within PGA1_c05300at 527.115 kb on + strand, within PGA1_c05300at 527.124 kb on - strand, within PGA1_c05300at 527.154 kb on - strand, within PGA1_c05300at 527.226 kb on - strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.250 kb on + strand, within PGA1_c05300at 527.258 kb on - strand, within PGA1_c05300at 527.277 kb on + strand, within PGA1_c05300at 527.320 kb on + strand, within PGA1_c05300at 527.371 kb on + strand, within PGA1_c05300at 527.376 kb on + strand, within PGA1_c05300at 527.379 kb on - strand, within PGA1_c05300at 527.379 kb on - strand, within PGA1_c05300at 527.384 kb on - strand, within PGA1_c05300at 527.534 kb on - strand, within PGA1_c05300at 527.578 kb on - strand, within PGA1_c05300at 527.590 kb on + strand, within PGA1_c05300at 527.618 kb on - strandat 527.636 kb on + strandat 527.686 kb on + strandat 527.729 kb on + strandat 527.731 kb on + strandat 527.827 kb on - strand, within PGA1_c05310at 527.850 kb on - strand, within PGA1_c05310at 527.862 kb on - strand, within PGA1_c05310at 527.866 kb on + strand, within PGA1_c05310at 527.876 kb on + strand, within PGA1_c05310at 527.891 kb on + strand, within PGA1_c05310at 527.953 kb on + strand, within PGA1_c05310at 528.030 kb on + strand, within PGA1_c05310at 528.085 kb on - strand, within PGA1_c05310at 528.096 kb on + strand, within PGA1_c05310at 528.122 kb on + strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.146 kb on + strand, within PGA1_c05310at 528.156 kb on + strand, within PGA1_c05310at 528.159 kb on - strand, within PGA1_c05310at 528.164 kb on - strand, within PGA1_c05310at 528.172 kb on + strand, within PGA1_c05310at 528.177 kb on - strand, within PGA1_c05310at 528.198 kb on + strand, within PGA1_c05310at 528.240 kb on + strand, within PGA1_c05310at 528.240 kb on - strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.257 kb on + strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.382 kb on + strand, within PGA1_c05310at 528.390 kb on + strand, within PGA1_c05310at 528.424 kb on + strand, within PGA1_c05310at 528.441 kb on + strand, within PGA1_c05310at 528.522 kb on + strandat 528.545 kb on - strandat 528.637 kb on + strandat 528.637 kb on + strandat 528.669 kb on - strandat 528.688 kb on - strandat 528.692 kb on + strandat 528.702 kb on + strandat 528.710 kb on - strandat 528.710 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM
remove
525,503 - PGA1_c05290 0.37 +1.9
525,509 - PGA1_c05290 0.38 -2.4
525,541 + PGA1_c05290 0.40 +2.2
525,548 + PGA1_c05290 0.41 +1.1
525,549 - PGA1_c05290 0.41 -0.6
525,556 - PGA1_c05290 0.41 -0.1
525,596 + PGA1_c05290 0.44 -0.2
525,613 + PGA1_c05290 0.45 +1.0
525,626 - PGA1_c05290 0.46 +1.9
525,628 + PGA1_c05290 0.47 -0.1
525,674 - PGA1_c05290 0.50 +2.3
525,712 - PGA1_c05290 0.53 -0.4
525,754 + PGA1_c05290 0.56 +2.1
525,762 - PGA1_c05290 0.56 +1.1
525,796 - PGA1_c05290 0.59 +0.5
525,798 - PGA1_c05290 0.59 +2.4
525,836 + PGA1_c05290 0.62 +0.4
525,844 - PGA1_c05290 0.62 +0.9
525,888 - PGA1_c05290 0.66 +0.2
525,924 + PGA1_c05290 0.68 -2.7
525,940 + PGA1_c05290 0.69 +0.0
525,943 - PGA1_c05290 0.70 +2.1
525,953 - PGA1_c05290 0.70 +0.8
525,984 + PGA1_c05290 0.73 +0.4
525,984 + PGA1_c05290 0.73 +0.9
525,986 + PGA1_c05290 0.73 +0.2
525,992 - PGA1_c05290 0.73 +2.3
525,992 - PGA1_c05290 0.73 +2.3
526,029 + PGA1_c05290 0.76 -1.4
526,029 + PGA1_c05290 0.76 +0.7
526,029 + PGA1_c05290 0.76 +0.2
526,036 - PGA1_c05290 0.76 -0.4
526,037 - PGA1_c05290 0.76 -1.2
526,037 - PGA1_c05290 0.76 +0.6
526,037 - PGA1_c05290 0.76 +1.4
526,062 - PGA1_c05290 0.78 -0.4
526,080 - PGA1_c05290 0.80 +0.4
526,116 + PGA1_c05290 0.82 -1.5
526,116 + PGA1_c05290 0.82 +0.8
526,182 + PGA1_c05290 0.87 -1.3
526,185 - PGA1_c05290 0.87 -0.5
526,187 + PGA1_c05290 0.87 +1.2
526,190 - PGA1_c05290 0.88 +1.8
526,285 - +0.5
526,304 - +3.0
526,330 - +0.4
526,346 + -0.4
526,390 + -0.1
526,437 - +0.6
526,532 - -0.1
526,535 - +3.3
526,573 - +0.7
526,579 - -1.8
526,593 - +1.1
526,660 + PGA1_c05300 0.13 -0.6
526,660 + PGA1_c05300 0.13 -1.1
526,663 - PGA1_c05300 0.13 -0.2
526,663 - PGA1_c05300 0.13 -1.0
526,668 + PGA1_c05300 0.14 +1.5
526,671 + PGA1_c05300 0.14 -0.2
526,752 - PGA1_c05300 0.21 +0.1
526,759 + PGA1_c05300 0.21 +0.9
526,925 + PGA1_c05300 0.35 +1.2
526,932 - PGA1_c05300 0.35 +0.6
526,939 + PGA1_c05300 0.36 +1.3
526,988 - PGA1_c05300 0.40 +0.0
526,988 - PGA1_c05300 0.40 +0.5
527,083 - PGA1_c05300 0.48 +0.7
527,085 + PGA1_c05300 0.48 -1.7
527,093 + PGA1_c05300 0.49 -0.3
527,115 + PGA1_c05300 0.50 +1.1
527,124 - PGA1_c05300 0.51 +1.2
527,154 - PGA1_c05300 0.54 -0.2
527,226 - PGA1_c05300 0.59 -0.3
527,250 + PGA1_c05300 0.61 +0.6
527,250 + PGA1_c05300 0.61 +0.7
527,258 - PGA1_c05300 0.62 +2.0
527,277 + PGA1_c05300 0.64 -0.5
527,320 + PGA1_c05300 0.67 +0.5
527,371 + PGA1_c05300 0.71 +0.1
527,376 + PGA1_c05300 0.72 -1.8
527,379 - PGA1_c05300 0.72 +1.2
527,379 - PGA1_c05300 0.72 -0.1
527,384 - PGA1_c05300 0.72 +1.2
527,534 - PGA1_c05300 0.85 +1.3
527,578 - PGA1_c05300 0.88 -0.1
527,590 + PGA1_c05300 0.89 +0.7
527,618 - +1.2
527,636 + +1.4
527,686 + +1.1
527,729 + -0.2
527,731 + +2.3
527,827 - PGA1_c05310 0.11 +0.7
527,850 - PGA1_c05310 0.13 +1.5
527,862 - PGA1_c05310 0.15 -0.3
527,866 + PGA1_c05310 0.15 +0.9
527,876 + PGA1_c05310 0.16 -1.5
527,891 + PGA1_c05310 0.18 +0.1
527,953 + PGA1_c05310 0.26 -0.9
528,030 + PGA1_c05310 0.35 +0.4
528,085 - PGA1_c05310 0.41 +0.6
528,096 + PGA1_c05310 0.42 -0.8
528,122 + PGA1_c05310 0.46 +0.5
528,132 - PGA1_c05310 0.47 +1.1
528,132 - PGA1_c05310 0.47 +0.3
528,146 + PGA1_c05310 0.48 -0.6
528,156 + PGA1_c05310 0.50 +2.1
528,159 - PGA1_c05310 0.50 -2.8
528,164 - PGA1_c05310 0.51 +1.0
528,172 + PGA1_c05310 0.51 +1.6
528,177 - PGA1_c05310 0.52 -0.0
528,198 + PGA1_c05310 0.55 +2.3
528,240 + PGA1_c05310 0.60 +0.3
528,240 - PGA1_c05310 0.60 +0.9
528,252 + PGA1_c05310 0.61 +0.6
528,252 + PGA1_c05310 0.61 +2.6
528,257 + PGA1_c05310 0.62 +0.5
528,260 - PGA1_c05310 0.62 -0.3
528,260 - PGA1_c05310 0.62 -0.8
528,260 - PGA1_c05310 0.62 +1.6
528,313 - PGA1_c05310 0.68 +2.0
528,313 - PGA1_c05310 0.68 -1.2
528,363 + PGA1_c05310 0.74 +0.9
528,363 + PGA1_c05310 0.74 -0.5
528,363 + PGA1_c05310 0.74 +0.7
528,363 + PGA1_c05310 0.74 +1.2
528,371 - PGA1_c05310 0.75 +0.3
528,371 - PGA1_c05310 0.75 +1.7
528,371 - PGA1_c05310 0.75 +0.5
528,382 + PGA1_c05310 0.76 +1.5
528,390 + PGA1_c05310 0.77 -0.4
528,424 + PGA1_c05310 0.81 +0.4
528,441 + PGA1_c05310 0.83 +1.0
528,522 + -1.2
528,545 - -0.2
528,637 + -1.9
528,637 + +0.8
528,669 - +0.6
528,688 - -0.1
528,692 + +0.2
528,702 + -0.7
528,710 - -1.7
528,710 - -0.6

Or see this region's nucleotide sequence