Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g126 and HP15_p187g127 are separated by 13 nucleotides HP15_p187g127 and HP15_p187g128 are separated by 10 nucleotides HP15_p187g128 and HP15_p187g129 overlap by 4 nucleotides HP15_p187g129 and HP15_p187g130 are separated by 263 nucleotides
HP15_p187g126: HP15_p187g126 - monooxygenase, flavin-binding family protein, at 128,903 to 130,426
_p187g126
HP15_p187g127: HP15_p187g127 - oxidoreductase, short chain dehydrogenase/reductase family, at 130,440 to 131,288
_p187g127
HP15_p187g128: HP15_p187g128 - uncharacterized conserved protein, at 131,299 to 132,234
_p187g128
HP15_p187g129: HP15_p187g129 - hypothetical protein, at 132,231 to 132,338
_p187g129
HP15_p187g130: HP15_p187g130 - conserved hypothetical protein, at 132,602 to 133,303
_p187g130
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.393 kb on + strand at 130.401 kb on - strand at 130.436 kb on - strand at 130.437 kb on + strand at 130.438 kb on + strand at 130.445 kb on - strand at 130.510 kb on + strand at 130.540 kb on + strand, within HP15_p187g127 at 130.543 kb on + strand, within HP15_p187g127 at 130.543 kb on + strand, within HP15_p187g127 at 130.548 kb on - strand, within HP15_p187g127 at 130.555 kb on + strand, within HP15_p187g127 at 130.574 kb on + strand, within HP15_p187g127 at 130.581 kb on - strand, within HP15_p187g127 at 130.582 kb on - strand, within HP15_p187g127 at 130.605 kb on - strand, within HP15_p187g127 at 130.614 kb on + strand, within HP15_p187g127 at 130.622 kb on - strand, within HP15_p187g127 at 130.631 kb on - strand, within HP15_p187g127 at 130.693 kb on - strand, within HP15_p187g127 at 130.724 kb on - strand, within HP15_p187g127 at 130.726 kb on + strand, within HP15_p187g127 at 130.726 kb on + strand, within HP15_p187g127 at 130.733 kb on + strand, within HP15_p187g127 at 130.734 kb on - strand, within HP15_p187g127 at 130.794 kb on + strand, within HP15_p187g127 at 130.802 kb on - strand, within HP15_p187g127 at 130.809 kb on + strand, within HP15_p187g127 at 130.810 kb on + strand, within HP15_p187g127 at 130.812 kb on + strand, within HP15_p187g127 at 130.818 kb on - strand, within HP15_p187g127 at 130.839 kb on - strand, within HP15_p187g127 at 130.871 kb on + strand, within HP15_p187g127 at 130.879 kb on - strand, within HP15_p187g127 at 130.896 kb on - strand, within HP15_p187g127 at 130.900 kb on + strand, within HP15_p187g127 at 130.907 kb on + strand, within HP15_p187g127 at 130.907 kb on + strand, within HP15_p187g127 at 130.907 kb on + strand, within HP15_p187g127 at 130.907 kb on + strand, within HP15_p187g127 at 130.907 kb on + strand, within HP15_p187g127 at 130.908 kb on - strand, within HP15_p187g127 at 130.915 kb on - strand, within HP15_p187g127 at 130.915 kb on - strand, within HP15_p187g127 at 130.924 kb on - strand, within HP15_p187g127 at 130.926 kb on + strand, within HP15_p187g127 at 130.934 kb on - strand, within HP15_p187g127 at 130.980 kb on - strand, within HP15_p187g127 at 130.988 kb on + strand, within HP15_p187g127 at 131.038 kb on + strand, within HP15_p187g127 at 131.038 kb on + strand, within HP15_p187g127 at 131.045 kb on - strand, within HP15_p187g127 at 131.046 kb on - strand, within HP15_p187g127 at 131.046 kb on - strand, within HP15_p187g127 at 131.046 kb on - strand, within HP15_p187g127 at 131.048 kb on + strand, within HP15_p187g127 at 131.053 kb on + strand, within HP15_p187g127 at 131.053 kb on + strand, within HP15_p187g127 at 131.053 kb on + strand, within HP15_p187g127 at 131.053 kb on + strand, within HP15_p187g127 at 131.053 kb on + strand, within HP15_p187g127 at 131.056 kb on - strand, within HP15_p187g127 at 131.058 kb on + strand, within HP15_p187g127 at 131.058 kb on + strand, within HP15_p187g127 at 131.061 kb on - strand, within HP15_p187g127 at 131.061 kb on - strand, within HP15_p187g127 at 131.061 kb on - strand, within HP15_p187g127 at 131.061 kb on - strand, within HP15_p187g127 at 131.082 kb on + strand, within HP15_p187g127 at 131.151 kb on + strand, within HP15_p187g127 at 131.169 kb on - strand, within HP15_p187g127 at 131.215 kb on + strand at 131.215 kb on + strand at 131.215 kb on + strand at 131.215 kb on + strand at 131.216 kb on - strand at 131.243 kb on - strand at 131.310 kb on + strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.318 kb on - strand at 131.320 kb on + strand at 131.330 kb on - strand at 131.330 kb on - strand at 131.344 kb on + strand at 131.344 kb on + strand at 131.352 kb on - strand at 131.362 kb on + strand at 131.404 kb on - strand, within HP15_p187g128 at 131.442 kb on - strand, within HP15_p187g128 at 131.459 kb on + strand, within HP15_p187g128 at 131.467 kb on - strand, within HP15_p187g128 at 131.472 kb on - strand, within HP15_p187g128 at 131.482 kb on - strand, within HP15_p187g128 at 131.491 kb on + strand, within HP15_p187g128 at 131.496 kb on + strand, within HP15_p187g128 at 131.496 kb on + strand, within HP15_p187g128 at 131.496 kb on + strand, within HP15_p187g128 at 131.496 kb on + strand, within HP15_p187g128 at 131.504 kb on - strand, within HP15_p187g128 at 131.578 kb on + strand, within HP15_p187g128 at 131.578 kb on + strand, within HP15_p187g128 at 131.578 kb on + strand, within HP15_p187g128 at 131.586 kb on - strand, within HP15_p187g128 at 131.586 kb on - strand, within HP15_p187g128 at 131.601 kb on - strand, within HP15_p187g128 at 131.667 kb on + strand, within HP15_p187g128 at 131.675 kb on - strand, within HP15_p187g128 at 131.675 kb on - strand, within HP15_p187g128 at 131.675 kb on - strand, within HP15_p187g128 at 131.675 kb on - strand, within HP15_p187g128 at 131.697 kb on + strand, within HP15_p187g128 at 131.697 kb on + strand, within HP15_p187g128 at 131.705 kb on - strand, within HP15_p187g128 at 131.705 kb on - strand, within HP15_p187g128 at 131.730 kb on + strand, within HP15_p187g128 at 131.736 kb on - strand, within HP15_p187g128 at 131.827 kb on - strand, within HP15_p187g128 at 131.834 kb on - strand at 131.860 kb on + strand, within HP15_p187g128 at 131.868 kb on - strand, within HP15_p187g128 at 131.916 kb on - strand, within HP15_p187g128 at 131.923 kb on - strand, within HP15_p187g128 at 131.968 kb on + strand, within HP15_p187g128 at 132.015 kb on + strand, within HP15_p187g128 at 132.015 kb on + strand, within HP15_p187g128 at 132.021 kb on - strand, within HP15_p187g128 at 132.023 kb on - strand, within HP15_p187g128 at 132.053 kb on - strand, within HP15_p187g128 at 132.053 kb on - strand, within HP15_p187g128 at 132.053 kb on - strand, within HP15_p187g128 at 132.065 kb on + strand, within HP15_p187g128 at 132.094 kb on + strand, within HP15_p187g128 at 132.099 kb on + strand, within HP15_p187g128 at 132.107 kb on - strand, within HP15_p187g128 at 132.111 kb on + strand, within HP15_p187g128 at 132.153 kb on - strand at 132.153 kb on - strand at 132.153 kb on - strand at 132.153 kb on - strand at 132.153 kb on - strand at 132.194 kb on + strand at 132.194 kb on + strand at 132.202 kb on - strand at 132.207 kb on - strand at 132.266 kb on + strand, within HP15_p187g129 at 132.274 kb on - strand, within HP15_p187g129 at 132.280 kb on + strand, within HP15_p187g129 at 132.288 kb on - strand, within HP15_p187g129 at 132.361 kb on - strand at 132.361 kb on - strand at 132.370 kb on + strand at 132.370 kb on + strand at 132.378 kb on - strand at 132.386 kb on + strand at 132.386 kb on + strand at 132.386 kb on + strand at 132.393 kb on - strand at 132.394 kb on - strand at 132.394 kb on - strand at 132.431 kb on + strand at 132.465 kb on + strand at 132.465 kb on - strand at 132.593 kb on + strand at 132.593 kb on + strand at 132.606 kb on - strand at 132.606 kb on - strand at 132.606 kb on - strand at 132.652 kb on - strand at 132.692 kb on + strand, within HP15_p187g130 at 132.692 kb on + strand, within HP15_p187g130 at 132.692 kb on + strand, within HP15_p187g130 at 132.692 kb on + strand, within HP15_p187g130 at 132.692 kb on + strand, within HP15_p187g130 at 132.700 kb on - strand, within HP15_p187g130 at 132.742 kb on + strand, within HP15_p187g130 at 132.742 kb on + strand, within HP15_p187g130 at 132.745 kb on - strand, within HP15_p187g130 at 132.750 kb on - strand, within HP15_p187g130 at 132.760 kb on + strand, within HP15_p187g130 at 132.794 kb on - strand, within HP15_p187g130 at 132.827 kb on + strand, within HP15_p187g130 at 132.842 kb on + strand, within HP15_p187g130 at 132.842 kb on + strand, within HP15_p187g130 at 132.842 kb on + strand, within HP15_p187g130 at 132.850 kb on - strand, within HP15_p187g130 at 132.850 kb on - strand, within HP15_p187g130 at 132.850 kb on - strand, within HP15_p187g130 at 132.850 kb on - strand, within HP15_p187g130 at 132.850 kb on - strand, within HP15_p187g130 at 132.852 kb on + strand, within HP15_p187g130 at 132.852 kb on + strand, within HP15_p187g130 at 132.860 kb on - strand, within HP15_p187g130 at 132.860 kb on - strand, within HP15_p187g130 at 132.893 kb on - strand, within HP15_p187g130 at 132.946 kb on - strand, within HP15_p187g130 at 132.946 kb on - strand, within HP15_p187g130 at 132.975 kb on + strand, within HP15_p187g130 at 133.014 kb on - strand, within HP15_p187g130 at 133.036 kb on + strand, within HP15_p187g130 at 133.036 kb on + strand, within HP15_p187g130 at 133.036 kb on + strand, within HP15_p187g130 at 133.059 kb on + strand, within HP15_p187g130 at 133.089 kb on - strand, within HP15_p187g130 at 133.103 kb on - strand, within HP15_p187g130 at 133.104 kb on - strand, within HP15_p187g130 at 133.139 kb on + strand, within HP15_p187g130 at 133.139 kb on + strand, within HP15_p187g130 at 133.165 kb on - strand, within HP15_p187g130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 130,393 + +0.3 130,401 - +0.4 130,436 - +0.6 130,437 + -0.0 130,438 + -0.7 130,445 - -0.1 130,510 + +0.5 130,540 + HP15_p187g127 0.12 +0.0 130,543 + HP15_p187g127 0.12 -0.1 130,543 + HP15_p187g127 0.12 +0.3 130,548 - HP15_p187g127 0.13 -0.1 130,555 + HP15_p187g127 0.14 +1.1 130,574 + HP15_p187g127 0.16 +0.4 130,581 - HP15_p187g127 0.17 -0.2 130,582 - HP15_p187g127 0.17 +0.0 130,605 - HP15_p187g127 0.19 +0.3 130,614 + HP15_p187g127 0.20 -0.8 130,622 - HP15_p187g127 0.21 +0.1 130,631 - HP15_p187g127 0.22 -0.3 130,693 - HP15_p187g127 0.30 -0.1 130,724 - HP15_p187g127 0.33 -0.2 130,726 + HP15_p187g127 0.34 +0.3 130,726 + HP15_p187g127 0.34 -0.2 130,733 + HP15_p187g127 0.35 +0.1 130,734 - HP15_p187g127 0.35 +0.9 130,794 + HP15_p187g127 0.42 +0.3 130,802 - HP15_p187g127 0.43 -0.3 130,809 + HP15_p187g127 0.43 -0.1 130,810 + HP15_p187g127 0.44 -0.1 130,812 + HP15_p187g127 0.44 +0.4 130,818 - HP15_p187g127 0.45 +0.1 130,839 - HP15_p187g127 0.47 +0.1 130,871 + HP15_p187g127 0.51 +0.1 130,879 - HP15_p187g127 0.52 +0.9 130,896 - HP15_p187g127 0.54 +0.3 130,900 + HP15_p187g127 0.54 -0.3 130,907 + HP15_p187g127 0.55 +0.3 130,907 + HP15_p187g127 0.55 -0.3 130,907 + HP15_p187g127 0.55 +0.3 130,907 + HP15_p187g127 0.55 -0.9 130,907 + HP15_p187g127 0.55 -0.5 130,908 - HP15_p187g127 0.55 +0.2 130,915 - HP15_p187g127 0.56 +0.0 130,915 - HP15_p187g127 0.56 -0.1 130,924 - HP15_p187g127 0.57 -0.6 130,926 + HP15_p187g127 0.57 +0.2 130,934 - HP15_p187g127 0.58 -0.4 130,980 - HP15_p187g127 0.64 -1.7 130,988 + HP15_p187g127 0.65 -0.1 131,038 + HP15_p187g127 0.70 -0.2 131,038 + HP15_p187g127 0.70 +0.9 131,045 - HP15_p187g127 0.71 +1.0 131,046 - HP15_p187g127 0.71 +0.1 131,046 - HP15_p187g127 0.71 -0.2 131,046 - HP15_p187g127 0.71 -0.2 131,048 + HP15_p187g127 0.72 -1.0 131,053 + HP15_p187g127 0.72 -0.0 131,053 + HP15_p187g127 0.72 -0.0 131,053 + HP15_p187g127 0.72 +0.7 131,053 + HP15_p187g127 0.72 -0.5 131,053 + HP15_p187g127 0.72 -0.7 131,056 - HP15_p187g127 0.73 -0.3 131,058 + HP15_p187g127 0.73 -0.4 131,058 + HP15_p187g127 0.73 -0.5 131,061 - HP15_p187g127 0.73 -0.4 131,061 - HP15_p187g127 0.73 +0.6 131,061 - HP15_p187g127 0.73 +0.0 131,061 - HP15_p187g127 0.73 -0.2 131,082 + HP15_p187g127 0.76 +0.5 131,151 + HP15_p187g127 0.84 +0.1 131,169 - HP15_p187g127 0.86 +0.4 131,215 + +0.7 131,215 + -0.5 131,215 + +0.0 131,215 + +0.3 131,216 - +0.7 131,243 - +0.3 131,310 + +0.2 131,318 - +1.2 131,318 - +0.1 131,318 - +0.3 131,318 - -1.2 131,318 - -1.1 131,318 - -1.9 131,318 - +1.4 131,318 - +0.4 131,318 - +0.4 131,320 + -0.4 131,330 - -0.0 131,330 - +0.1 131,344 + -0.3 131,344 + +2.0 131,352 - +0.0 131,362 + +0.1 131,404 - HP15_p187g128 0.11 -0.7 131,442 - HP15_p187g128 0.15 +2.6 131,459 + HP15_p187g128 0.17 +0.4 131,467 - HP15_p187g128 0.18 +1.0 131,472 - HP15_p187g128 0.18 +0.7 131,482 - HP15_p187g128 0.20 -0.5 131,491 + HP15_p187g128 0.21 +0.1 131,496 + HP15_p187g128 0.21 -0.1 131,496 + HP15_p187g128 0.21 +0.4 131,496 + HP15_p187g128 0.21 -0.1 131,496 + HP15_p187g128 0.21 -0.5 131,504 - HP15_p187g128 0.22 +0.1 131,578 + HP15_p187g128 0.30 +0.5 131,578 + HP15_p187g128 0.30 +0.4 131,578 + HP15_p187g128 0.30 +0.5 131,586 - HP15_p187g128 0.31 -0.8 131,586 - HP15_p187g128 0.31 +0.0 131,601 - HP15_p187g128 0.32 +0.7 131,667 + HP15_p187g128 0.39 +0.2 131,675 - HP15_p187g128 0.40 -0.1 131,675 - HP15_p187g128 0.40 +0.3 131,675 - HP15_p187g128 0.40 +0.6 131,675 - HP15_p187g128 0.40 +0.6 131,697 + HP15_p187g128 0.43 +0.1 131,697 + HP15_p187g128 0.43 +0.1 131,705 - HP15_p187g128 0.43 +0.4 131,705 - HP15_p187g128 0.43 -2.9 131,730 + HP15_p187g128 0.46 +0.2 131,736 - HP15_p187g128 0.47 +1.0 131,827 - HP15_p187g128 0.56 -1.0 131,834 - +1.4 131,860 + HP15_p187g128 0.60 +2.4 131,868 - HP15_p187g128 0.61 +0.4 131,916 - HP15_p187g128 0.66 +0.0 131,923 - HP15_p187g128 0.67 -0.7 131,968 + HP15_p187g128 0.71 +0.5 132,015 + HP15_p187g128 0.76 -0.1 132,015 + HP15_p187g128 0.76 -0.4 132,021 - HP15_p187g128 0.77 -1.0 132,023 - HP15_p187g128 0.77 +0.2 132,053 - HP15_p187g128 0.81 +0.6 132,053 - HP15_p187g128 0.81 +0.2 132,053 - HP15_p187g128 0.81 +0.3 132,065 + HP15_p187g128 0.82 -0.0 132,094 + HP15_p187g128 0.85 -0.5 132,099 + HP15_p187g128 0.85 -1.4 132,107 - HP15_p187g128 0.86 +1.8 132,111 + HP15_p187g128 0.87 +0.9 132,153 - +0.7 132,153 - -1.2 132,153 - -0.1 132,153 - +0.5 132,153 - +0.0 132,194 + -0.4 132,194 + -2.0 132,202 - -0.5 132,207 - -0.6 132,266 + HP15_p187g129 0.32 -0.5 132,274 - HP15_p187g129 0.40 -1.2 132,280 + HP15_p187g129 0.45 +0.0 132,288 - HP15_p187g129 0.53 +0.4 132,361 - +0.4 132,361 - -0.6 132,370 + +1.1 132,370 + -0.6 132,378 - -0.7 132,386 + +0.6 132,386 + -0.3 132,386 + +0.6 132,393 - -1.4 132,394 - +0.3 132,394 - -0.5 132,431 + +0.3 132,465 + +0.0 132,465 - -1.3 132,593 + +0.4 132,593 + -1.0 132,606 - +0.4 132,606 - -0.6 132,606 - +0.2 132,652 - +0.1 132,692 + HP15_p187g130 0.13 -0.4 132,692 + HP15_p187g130 0.13 -0.4 132,692 + HP15_p187g130 0.13 -0.3 132,692 + HP15_p187g130 0.13 +0.8 132,692 + HP15_p187g130 0.13 -0.1 132,700 - HP15_p187g130 0.14 -0.1 132,742 + HP15_p187g130 0.20 +1.3 132,742 + HP15_p187g130 0.20 -0.9 132,745 - HP15_p187g130 0.20 +0.8 132,750 - HP15_p187g130 0.21 +0.5 132,760 + HP15_p187g130 0.23 +0.6 132,794 - HP15_p187g130 0.27 -0.2 132,827 + HP15_p187g130 0.32 +0.4 132,842 + HP15_p187g130 0.34 -0.1 132,842 + HP15_p187g130 0.34 +0.8 132,842 + HP15_p187g130 0.34 +0.1 132,850 - HP15_p187g130 0.35 +0.7 132,850 - HP15_p187g130 0.35 +0.3 132,850 - HP15_p187g130 0.35 +0.5 132,850 - HP15_p187g130 0.35 +0.2 132,850 - HP15_p187g130 0.35 -0.9 132,852 + HP15_p187g130 0.36 +0.4 132,852 + HP15_p187g130 0.36 -0.1 132,860 - HP15_p187g130 0.37 +0.4 132,860 - HP15_p187g130 0.37 -1.7 132,893 - HP15_p187g130 0.41 +0.6 132,946 - HP15_p187g130 0.49 -0.2 132,946 - HP15_p187g130 0.49 +0.0 132,975 + HP15_p187g130 0.53 +0.0 133,014 - HP15_p187g130 0.59 +1.1 133,036 + HP15_p187g130 0.62 -0.4 133,036 + HP15_p187g130 0.62 -0.1 133,036 + HP15_p187g130 0.62 -0.3 133,059 + HP15_p187g130 0.65 +1.6 133,089 - HP15_p187g130 0.69 -0.0 133,103 - HP15_p187g130 0.71 +0.7 133,104 - HP15_p187g130 0.72 +0.2 133,139 + HP15_p187g130 0.76 +0.0 133,139 + HP15_p187g130 0.76 +0.1 133,165 - HP15_p187g130 0.80 -0.4
Or see this region's nucleotide sequence