Strain Fitness in Marinobacter adhaerens HP15 around HP15_405

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_404 and HP15_405 are separated by 90 nucleotidesHP15_405 and HP15_406 are separated by 202 nucleotides HP15_404: HP15_404 - DNA-directed RNA polymerase subunit alpha, at 398,309 to 399,268 _404 HP15_405: HP15_405 - ribosomal protein L17, at 399,359 to 399,700 _405 HP15_406: HP15_406 - excinuclease ABC, ATPase subunit (A), at 399,903 to 402,743 _406 Position (kb) 399 400Strain fitness (log2 ratio) -1 0 1 2at 400.060 kb on + strandat 400.060 kb on + strandat 400.158 kb on - strandat 400.360 kb on + strand, within HP15_406at 400.418 kb on + strand, within HP15_406at 400.426 kb on - strand, within HP15_406at 400.533 kb on - strand, within HP15_406at 400.635 kb on + strand, within HP15_406at 400.639 kb on - strand, within HP15_406at 400.661 kb on + strand, within HP15_406at 400.661 kb on + strand, within HP15_406at 400.669 kb on - strand, within HP15_406at 400.677 kb on + strand, within HP15_406at 400.682 kb on + strand, within HP15_406at 400.682 kb on + strand, within HP15_406at 400.690 kb on - strand, within HP15_406

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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400,060 + +0.2
400,060 + -0.8
400,158 - +1.2
400,360 + HP15_406 0.16 -0.3
400,418 + HP15_406 0.18 -1.2
400,426 - HP15_406 0.18 +0.0
400,533 - HP15_406 0.22 -0.2
400,635 + HP15_406 0.26 +0.3
400,639 - HP15_406 0.26 +0.0
400,661 + HP15_406 0.27 -1.0
400,661 + HP15_406 0.27 +1.8
400,669 - HP15_406 0.27 +0.3
400,677 + HP15_406 0.27 -0.7
400,682 + HP15_406 0.27 -0.7
400,682 + HP15_406 0.27 +0.6
400,690 - HP15_406 0.28 +0.6

Or see this region's nucleotide sequence