Strain Fitness in Marinobacter adhaerens HP15 around HP15_4029

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4027 and HP15_4028 are separated by 56 nucleotidesHP15_4028 and HP15_4029 are separated by 10 nucleotidesHP15_4029 and HP15_4030 are separated by 13 nucleotidesHP15_4030 and HP15_4031 are separated by 5 nucleotides HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593 _4027 HP15_4028: HP15_4028 - phenol hydroxylase conserved region, at 4,265,650 to 4,266,018 _4028 HP15_4029: HP15_4029 - oxidoreductase FAD/NAD(P)-binding domain protein, at 4,266,029 to 4,267,090 _4029 HP15_4030: HP15_4030 - chloroplast-type ferredoxin, at 4,267,104 to 4,267,439 _4030 HP15_4031: HP15_4031 - catechol 2,3-dioxygenase, at 4,267,445 to 4,268,368 _4031 Position (kb) 4266 4267 4268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4265.158 kb on + strand, within HP15_4027at 4265.166 kb on - strand, within HP15_4027at 4265.386 kb on + strand, within HP15_4027at 4265.524 kb on - strandat 4265.550 kb on - strandat 4265.700 kb on + strand, within HP15_4028at 4265.707 kb on + strand, within HP15_4028at 4265.773 kb on + strand, within HP15_4028at 4265.805 kb on - strand, within HP15_4028at 4265.827 kb on + strand, within HP15_4028at 4265.851 kb on + strand, within HP15_4028at 4265.893 kb on - strand, within HP15_4028at 4265.933 kb on + strand, within HP15_4028at 4265.941 kb on - strand, within HP15_4028at 4265.941 kb on - strand, within HP15_4028at 4265.941 kb on - strand, within HP15_4028at 4265.976 kb on + strand, within HP15_4028at 4265.981 kb on + strand, within HP15_4028at 4265.989 kb on - strandat 4265.989 kb on - strandat 4266.027 kb on - strandat 4266.109 kb on + strandat 4266.109 kb on + strandat 4266.166 kb on + strand, within HP15_4029at 4266.180 kb on - strand, within HP15_4029at 4266.216 kb on + strand, within HP15_4029at 4266.228 kb on - strand, within HP15_4029at 4266.241 kb on + strand, within HP15_4029at 4266.332 kb on + strand, within HP15_4029at 4266.332 kb on + strand, within HP15_4029at 4266.337 kb on + strand, within HP15_4029at 4266.340 kb on - strand, within HP15_4029at 4266.363 kb on + strand, within HP15_4029at 4266.382 kb on + strand, within HP15_4029at 4266.382 kb on + strand, within HP15_4029at 4266.390 kb on - strand, within HP15_4029at 4266.431 kb on + strand, within HP15_4029at 4266.439 kb on + strand, within HP15_4029at 4266.439 kb on - strand, within HP15_4029at 4266.495 kb on - strand, within HP15_4029at 4266.633 kb on + strand, within HP15_4029at 4266.669 kb on + strand, within HP15_4029at 4266.669 kb on + strand, within HP15_4029at 4266.669 kb on + strand, within HP15_4029at 4266.677 kb on - strand, within HP15_4029at 4266.679 kb on + strand, within HP15_4029at 4266.823 kb on - strand, within HP15_4029at 4266.833 kb on + strand, within HP15_4029at 4266.892 kb on - strand, within HP15_4029at 4266.926 kb on + strand, within HP15_4029at 4266.936 kb on - strand, within HP15_4029at 4266.943 kb on - strand, within HP15_4029at 4266.988 kb on - strandat 4267.027 kb on + strandat 4267.035 kb on - strandat 4267.073 kb on - strandat 4267.205 kb on - strand, within HP15_4030at 4267.323 kb on - strand, within HP15_4030at 4267.475 kb on + strandat 4267.475 kb on + strandat 4267.475 kb on + strandat 4267.475 kb on + strandat 4267.483 kb on - strandat 4267.488 kb on - strandat 4267.498 kb on + strandat 4267.518 kb on + strandat 4267.518 kb on + strandat 4267.531 kb on - strandat 4267.537 kb on + strandat 4267.615 kb on - strand, within HP15_4031at 4267.642 kb on + strand, within HP15_4031at 4267.658 kb on - strand, within HP15_4031at 4267.664 kb on + strand, within HP15_4031at 4267.768 kb on + strand, within HP15_4031at 4267.875 kb on - strand, within HP15_4031at 4267.925 kb on - strand, within HP15_4031at 4268.014 kb on + strand, within HP15_4031at 4268.014 kb on + strand, within HP15_4031at 4268.016 kb on + strand, within HP15_4031at 4268.022 kb on - strand, within HP15_4031at 4268.022 kb on - strand, within HP15_4031at 4268.022 kb on - strand, within HP15_4031at 4268.024 kb on - strand, within HP15_4031

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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4,265,158 + HP15_4027 0.72 -0.0
4,265,166 - HP15_4027 0.72 +0.5
4,265,386 + HP15_4027 0.87 -0.0
4,265,524 - -2.8
4,265,550 - -2.7
4,265,700 + HP15_4028 0.14 -0.9
4,265,707 + HP15_4028 0.15 -0.2
4,265,773 + HP15_4028 0.33 +0.3
4,265,805 - HP15_4028 0.42 +0.5
4,265,827 + HP15_4028 0.48 +0.2
4,265,851 + HP15_4028 0.54 -1.0
4,265,893 - HP15_4028 0.66 -0.0
4,265,933 + HP15_4028 0.77 -0.1
4,265,941 - HP15_4028 0.79 -0.2
4,265,941 - HP15_4028 0.79 +0.2
4,265,941 - HP15_4028 0.79 +0.0
4,265,976 + HP15_4028 0.88 +0.3
4,265,981 + HP15_4028 0.90 -2.3
4,265,989 - +0.1
4,265,989 - -0.7
4,266,027 - +0.4
4,266,109 + -0.6
4,266,109 + -0.7
4,266,166 + HP15_4029 0.13 +0.1
4,266,180 - HP15_4029 0.14 -0.5
4,266,216 + HP15_4029 0.18 -1.1
4,266,228 - HP15_4029 0.19 +0.9
4,266,241 + HP15_4029 0.20 -0.4
4,266,332 + HP15_4029 0.29 +0.5
4,266,332 + HP15_4029 0.29 -0.3
4,266,337 + HP15_4029 0.29 +0.1
4,266,340 - HP15_4029 0.29 +1.2
4,266,363 + HP15_4029 0.31 +0.3
4,266,382 + HP15_4029 0.33 +0.1
4,266,382 + HP15_4029 0.33 +0.4
4,266,390 - HP15_4029 0.34 +0.8
4,266,431 + HP15_4029 0.38 +1.8
4,266,439 + HP15_4029 0.39 +0.1
4,266,439 - HP15_4029 0.39 -2.0
4,266,495 - HP15_4029 0.44 +1.6
4,266,633 + HP15_4029 0.57 +0.7
4,266,669 + HP15_4029 0.60 +0.0
4,266,669 + HP15_4029 0.60 +0.0
4,266,669 + HP15_4029 0.60 -1.2
4,266,677 - HP15_4029 0.61 +0.0
4,266,679 + HP15_4029 0.61 +0.6
4,266,823 - HP15_4029 0.75 +1.0
4,266,833 + HP15_4029 0.76 -0.4
4,266,892 - HP15_4029 0.81 +0.4
4,266,926 + HP15_4029 0.84 +0.5
4,266,936 - HP15_4029 0.85 +0.3
4,266,943 - HP15_4029 0.86 +0.6
4,266,988 - -0.9
4,267,027 + +0.7
4,267,035 - -0.0
4,267,073 - +0.1
4,267,205 - HP15_4030 0.30 -0.2
4,267,323 - HP15_4030 0.65 +1.1
4,267,475 + -0.7
4,267,475 + +1.2
4,267,475 + -0.0
4,267,475 + -0.9
4,267,483 - +0.0
4,267,488 - +0.5
4,267,498 + -1.4
4,267,518 + +0.3
4,267,518 + +0.7
4,267,531 - +0.5
4,267,537 + +0.7
4,267,615 - HP15_4031 0.18 -0.4
4,267,642 + HP15_4031 0.21 +0.3
4,267,658 - HP15_4031 0.23 +0.2
4,267,664 + HP15_4031 0.24 -0.6
4,267,768 + HP15_4031 0.35 -0.6
4,267,875 - HP15_4031 0.47 -0.4
4,267,925 - HP15_4031 0.52 -0.1
4,268,014 + HP15_4031 0.62 -0.6
4,268,014 + HP15_4031 0.62 -0.1
4,268,016 + HP15_4031 0.62 -0.1
4,268,022 - HP15_4031 0.62 -0.2
4,268,022 - HP15_4031 0.62 +0.3
4,268,022 - HP15_4031 0.62 -0.8
4,268,024 - HP15_4031 0.63 +0.5

Or see this region's nucleotide sequence