Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4027 and HP15_4028 are separated by 56 nucleotides HP15_4028 and HP15_4029 are separated by 10 nucleotides HP15_4029 and HP15_4030 are separated by 13 nucleotides HP15_4030 and HP15_4031 are separated by 5 nucleotides
HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593
_4027
HP15_4028: HP15_4028 - phenol hydroxylase conserved region, at 4,265,650 to 4,266,018
_4028
HP15_4029: HP15_4029 - oxidoreductase FAD/NAD(P)-binding domain protein, at 4,266,029 to 4,267,090
_4029
HP15_4030: HP15_4030 - chloroplast-type ferredoxin, at 4,267,104 to 4,267,439
_4030
HP15_4031: HP15_4031 - catechol 2,3-dioxygenase, at 4,267,445 to 4,268,368
_4031
Position (kb)
4266
4267
4268 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4265.158 kb on + strand, within HP15_4027 at 4265.166 kb on - strand, within HP15_4027 at 4265.386 kb on + strand, within HP15_4027 at 4265.524 kb on - strand at 4265.550 kb on - strand at 4265.700 kb on + strand, within HP15_4028 at 4265.707 kb on + strand, within HP15_4028 at 4265.773 kb on + strand, within HP15_4028 at 4265.805 kb on - strand, within HP15_4028 at 4265.827 kb on + strand, within HP15_4028 at 4265.851 kb on + strand, within HP15_4028 at 4265.893 kb on - strand, within HP15_4028 at 4265.933 kb on + strand, within HP15_4028 at 4265.941 kb on - strand, within HP15_4028 at 4265.941 kb on - strand, within HP15_4028 at 4265.941 kb on - strand, within HP15_4028 at 4265.976 kb on + strand, within HP15_4028 at 4265.981 kb on + strand, within HP15_4028 at 4265.989 kb on - strand at 4265.989 kb on - strand at 4266.027 kb on - strand at 4266.109 kb on + strand at 4266.109 kb on + strand at 4266.166 kb on + strand, within HP15_4029 at 4266.180 kb on - strand, within HP15_4029 at 4266.216 kb on + strand, within HP15_4029 at 4266.228 kb on - strand, within HP15_4029 at 4266.241 kb on + strand, within HP15_4029 at 4266.332 kb on + strand, within HP15_4029 at 4266.332 kb on + strand, within HP15_4029 at 4266.337 kb on + strand, within HP15_4029 at 4266.340 kb on - strand, within HP15_4029 at 4266.363 kb on + strand, within HP15_4029 at 4266.382 kb on + strand, within HP15_4029 at 4266.382 kb on + strand, within HP15_4029 at 4266.390 kb on - strand, within HP15_4029 at 4266.431 kb on + strand, within HP15_4029 at 4266.439 kb on + strand, within HP15_4029 at 4266.439 kb on - strand, within HP15_4029 at 4266.495 kb on - strand, within HP15_4029 at 4266.633 kb on + strand, within HP15_4029 at 4266.669 kb on + strand, within HP15_4029 at 4266.669 kb on + strand, within HP15_4029 at 4266.669 kb on + strand, within HP15_4029 at 4266.677 kb on - strand, within HP15_4029 at 4266.679 kb on + strand, within HP15_4029 at 4266.823 kb on - strand, within HP15_4029 at 4266.833 kb on + strand, within HP15_4029 at 4266.892 kb on - strand, within HP15_4029 at 4266.926 kb on + strand, within HP15_4029 at 4266.936 kb on - strand, within HP15_4029 at 4266.943 kb on - strand, within HP15_4029 at 4266.988 kb on - strand at 4267.027 kb on + strand at 4267.035 kb on - strand at 4267.073 kb on - strand at 4267.205 kb on - strand, within HP15_4030 at 4267.323 kb on - strand, within HP15_4030 at 4267.475 kb on + strand at 4267.475 kb on + strand at 4267.475 kb on + strand at 4267.475 kb on + strand at 4267.483 kb on - strand at 4267.488 kb on - strand at 4267.498 kb on + strand at 4267.518 kb on + strand at 4267.518 kb on + strand at 4267.531 kb on - strand at 4267.537 kb on + strand at 4267.615 kb on - strand, within HP15_4031 at 4267.642 kb on + strand, within HP15_4031 at 4267.658 kb on - strand, within HP15_4031 at 4267.664 kb on + strand, within HP15_4031 at 4267.768 kb on + strand, within HP15_4031 at 4267.875 kb on - strand, within HP15_4031 at 4267.925 kb on - strand, within HP15_4031 at 4268.014 kb on + strand, within HP15_4031 at 4268.014 kb on + strand, within HP15_4031 at 4268.016 kb on + strand, within HP15_4031 at 4268.022 kb on - strand, within HP15_4031 at 4268.022 kb on - strand, within HP15_4031 at 4268.022 kb on - strand, within HP15_4031 at 4268.024 kb on - strand, within HP15_4031
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 4,265,158 + HP15_4027 0.72 -0.0 4,265,166 - HP15_4027 0.72 +0.5 4,265,386 + HP15_4027 0.87 -0.0 4,265,524 - -2.8 4,265,550 - -2.7 4,265,700 + HP15_4028 0.14 -0.9 4,265,707 + HP15_4028 0.15 -0.2 4,265,773 + HP15_4028 0.33 +0.3 4,265,805 - HP15_4028 0.42 +0.5 4,265,827 + HP15_4028 0.48 +0.2 4,265,851 + HP15_4028 0.54 -1.0 4,265,893 - HP15_4028 0.66 -0.0 4,265,933 + HP15_4028 0.77 -0.1 4,265,941 - HP15_4028 0.79 -0.2 4,265,941 - HP15_4028 0.79 +0.2 4,265,941 - HP15_4028 0.79 +0.0 4,265,976 + HP15_4028 0.88 +0.3 4,265,981 + HP15_4028 0.90 -2.3 4,265,989 - +0.1 4,265,989 - -0.7 4,266,027 - +0.4 4,266,109 + -0.6 4,266,109 + -0.7 4,266,166 + HP15_4029 0.13 +0.1 4,266,180 - HP15_4029 0.14 -0.5 4,266,216 + HP15_4029 0.18 -1.1 4,266,228 - HP15_4029 0.19 +0.9 4,266,241 + HP15_4029 0.20 -0.4 4,266,332 + HP15_4029 0.29 +0.5 4,266,332 + HP15_4029 0.29 -0.3 4,266,337 + HP15_4029 0.29 +0.1 4,266,340 - HP15_4029 0.29 +1.2 4,266,363 + HP15_4029 0.31 +0.3 4,266,382 + HP15_4029 0.33 +0.1 4,266,382 + HP15_4029 0.33 +0.4 4,266,390 - HP15_4029 0.34 +0.8 4,266,431 + HP15_4029 0.38 +1.8 4,266,439 + HP15_4029 0.39 +0.1 4,266,439 - HP15_4029 0.39 -2.0 4,266,495 - HP15_4029 0.44 +1.6 4,266,633 + HP15_4029 0.57 +0.7 4,266,669 + HP15_4029 0.60 +0.0 4,266,669 + HP15_4029 0.60 +0.0 4,266,669 + HP15_4029 0.60 -1.2 4,266,677 - HP15_4029 0.61 +0.0 4,266,679 + HP15_4029 0.61 +0.6 4,266,823 - HP15_4029 0.75 +1.0 4,266,833 + HP15_4029 0.76 -0.4 4,266,892 - HP15_4029 0.81 +0.4 4,266,926 + HP15_4029 0.84 +0.5 4,266,936 - HP15_4029 0.85 +0.3 4,266,943 - HP15_4029 0.86 +0.6 4,266,988 - -0.9 4,267,027 + +0.7 4,267,035 - -0.0 4,267,073 - +0.1 4,267,205 - HP15_4030 0.30 -0.2 4,267,323 - HP15_4030 0.65 +1.1 4,267,475 + -0.7 4,267,475 + +1.2 4,267,475 + -0.0 4,267,475 + -0.9 4,267,483 - +0.0 4,267,488 - +0.5 4,267,498 + -1.4 4,267,518 + +0.3 4,267,518 + +0.7 4,267,531 - +0.5 4,267,537 + +0.7 4,267,615 - HP15_4031 0.18 -0.4 4,267,642 + HP15_4031 0.21 +0.3 4,267,658 - HP15_4031 0.23 +0.2 4,267,664 + HP15_4031 0.24 -0.6 4,267,768 + HP15_4031 0.35 -0.6 4,267,875 - HP15_4031 0.47 -0.4 4,267,925 - HP15_4031 0.52 -0.1 4,268,014 + HP15_4031 0.62 -0.6 4,268,014 + HP15_4031 0.62 -0.1 4,268,016 + HP15_4031 0.62 -0.1 4,268,022 - HP15_4031 0.62 -0.2 4,268,022 - HP15_4031 0.62 +0.3 4,268,022 - HP15_4031 0.62 -0.8 4,268,024 - HP15_4031 0.63 +0.5
Or see this region's nucleotide sequence