Strain Fitness in Marinobacter adhaerens HP15 around HP15_3909

Experiment: m.b. Cholin acetate 153.15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3907 and HP15_3908 are separated by 110 nucleotidesHP15_3908 and HP15_3909 are separated by 29 nucleotidesHP15_3909 and HP15_3910 are separated by 14 nucleotides HP15_3907: HP15_3907 - sodium/alanine symporter family protein, at 4,136,239 to 4,137,600 _3907 HP15_3908: HP15_3908 - CBS domain protein, at 4,137,711 to 4,138,214 _3908 HP15_3909: HP15_3909 - carboxylesterase, at 4,138,244 to 4,139,086 _3909 HP15_3910: HP15_3910 - metal dependent phosphohydrolase, at 4,139,101 to 4,140,225 _3910 Position (kb) 4138 4139 4140Strain fitness (log2 ratio) -2 -1 0 1 2at 4137.250 kb on - strand, within HP15_3907at 4137.270 kb on - strand, within HP15_3907at 4137.391 kb on - strand, within HP15_3907at 4137.545 kb on + strandat 4137.551 kb on + strandat 4137.551 kb on + strandat 4137.559 kb on - strandat 4137.616 kb on - strandat 4137.856 kb on - strand, within HP15_3908at 4137.960 kb on + strand, within HP15_3908at 4137.976 kb on + strand, within HP15_3908at 4137.981 kb on - strand, within HP15_3908at 4138.092 kb on - strand, within HP15_3908at 4138.093 kb on - strand, within HP15_3908at 4138.109 kb on - strand, within HP15_3908at 4138.134 kb on - strand, within HP15_3908at 4138.141 kb on + strand, within HP15_3908at 4138.149 kb on - strand, within HP15_3908at 4138.149 kb on - strand, within HP15_3908at 4138.171 kb on + strandat 4138.209 kb on - strandat 4138.403 kb on + strand, within HP15_3909at 4138.408 kb on + strand, within HP15_3909at 4138.416 kb on - strand, within HP15_3909at 4138.416 kb on - strand, within HP15_3909at 4138.416 kb on - strand, within HP15_3909at 4138.453 kb on - strand, within HP15_3909at 4138.485 kb on + strand, within HP15_3909at 4138.533 kb on - strand, within HP15_3909at 4138.577 kb on + strand, within HP15_3909at 4138.687 kb on + strand, within HP15_3909at 4138.706 kb on + strand, within HP15_3909at 4138.711 kb on + strand, within HP15_3909at 4138.714 kb on - strand, within HP15_3909at 4138.719 kb on - strand, within HP15_3909at 4138.781 kb on - strand, within HP15_3909at 4138.836 kb on + strand, within HP15_3909at 4138.891 kb on - strand, within HP15_3909at 4138.909 kb on - strand, within HP15_3909at 4138.962 kb on + strand, within HP15_3909at 4139.012 kb on + strandat 4139.107 kb on - strandat 4139.107 kb on - strandat 4139.122 kb on - strandat 4139.148 kb on + strandat 4139.207 kb on + strandat 4139.221 kb on + strand, within HP15_3910at 4139.263 kb on + strand, within HP15_3910at 4139.263 kb on + strand, within HP15_3910at 4139.264 kb on - strand, within HP15_3910at 4139.271 kb on - strand, within HP15_3910at 4139.365 kb on - strand, within HP15_3910at 4139.517 kb on + strand, within HP15_3910at 4139.526 kb on - strand, within HP15_3910at 4139.648 kb on + strand, within HP15_3910at 4139.675 kb on + strand, within HP15_3910at 4139.675 kb on + strand, within HP15_3910at 4139.683 kb on - strand, within HP15_3910at 4139.838 kb on - strand, within HP15_3910at 4139.843 kb on + strand, within HP15_3910at 4139.865 kb on + strand, within HP15_3910at 4139.865 kb on + strand, within HP15_3910at 4139.880 kb on + strand, within HP15_3910at 4139.893 kb on - strand, within HP15_3910at 4139.977 kb on - strand, within HP15_3910at 4139.988 kb on + strand, within HP15_3910at 4139.991 kb on - strand, within HP15_3910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
remove
4,137,250 - HP15_3907 0.74 +1.9
4,137,270 - HP15_3907 0.76 +1.7
4,137,391 - HP15_3907 0.85 +2.0
4,137,545 + +1.5
4,137,551 + +2.3
4,137,551 + +1.9
4,137,559 - +2.0
4,137,616 - -0.4
4,137,856 - HP15_3908 0.29 -0.8
4,137,960 + HP15_3908 0.49 -0.7
4,137,976 + HP15_3908 0.53 -0.0
4,137,981 - HP15_3908 0.54 -1.4
4,138,092 - HP15_3908 0.76 -0.2
4,138,093 - HP15_3908 0.76 -0.6
4,138,109 - HP15_3908 0.79 +0.8
4,138,134 - HP15_3908 0.84 -1.8
4,138,141 + HP15_3908 0.85 -0.2
4,138,149 - HP15_3908 0.87 -0.1
4,138,149 - HP15_3908 0.87 -1.1
4,138,171 + -0.9
4,138,209 - -0.7
4,138,403 + HP15_3909 0.19 +0.5
4,138,408 + HP15_3909 0.19 +0.5
4,138,416 - HP15_3909 0.20 -1.3
4,138,416 - HP15_3909 0.20 -0.0
4,138,416 - HP15_3909 0.20 -0.1
4,138,453 - HP15_3909 0.25 -0.5
4,138,485 + HP15_3909 0.29 +0.2
4,138,533 - HP15_3909 0.34 +0.4
4,138,577 + HP15_3909 0.40 +0.2
4,138,687 + HP15_3909 0.53 +0.1
4,138,706 + HP15_3909 0.55 -1.1
4,138,711 + HP15_3909 0.55 +0.1
4,138,714 - HP15_3909 0.56 -1.0
4,138,719 - HP15_3909 0.56 +0.1
4,138,781 - HP15_3909 0.64 +0.7
4,138,836 + HP15_3909 0.70 -0.1
4,138,891 - HP15_3909 0.77 +2.7
4,138,909 - HP15_3909 0.79 +0.3
4,138,962 + HP15_3909 0.85 -0.5
4,139,012 + +0.4
4,139,107 - -0.6
4,139,107 - +0.2
4,139,122 - +1.0
4,139,148 + -0.0
4,139,207 + -1.8
4,139,221 + HP15_3910 0.11 +0.1
4,139,263 + HP15_3910 0.14 -0.6
4,139,263 + HP15_3910 0.14 +0.5
4,139,264 - HP15_3910 0.14 -2.7
4,139,271 - HP15_3910 0.15 +0.3
4,139,365 - HP15_3910 0.23 +0.6
4,139,517 + HP15_3910 0.37 -0.8
4,139,526 - HP15_3910 0.38 +0.1
4,139,648 + HP15_3910 0.49 -0.8
4,139,675 + HP15_3910 0.51 +0.6
4,139,675 + HP15_3910 0.51 +0.0
4,139,683 - HP15_3910 0.52 -0.4
4,139,838 - HP15_3910 0.66 +0.3
4,139,843 + HP15_3910 0.66 -0.1
4,139,865 + HP15_3910 0.68 +0.6
4,139,865 + HP15_3910 0.68 -0.0
4,139,880 + HP15_3910 0.69 +0.2
4,139,893 - HP15_3910 0.70 +0.9
4,139,977 - HP15_3910 0.78 +0.1
4,139,988 + HP15_3910 0.79 +0.4
4,139,991 - HP15_3910 0.79 +0.9

Or see this region's nucleotide sequence