Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00260 and PGA1_65p00270 are separated by 68 nucleotides PGA1_65p00270 and PGA1_65p00280 are separated by 267 nucleotides
PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026
_65p00260
PGA1_65p00270: PGA1_65p00270 - Hemolysin-type calcium-binding repeat (2 copies)., at 34,095 to 36,314
_65p00270
PGA1_65p00280: PGA1_65p00280 - Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476)., at 36,582 to 37,838
_65p00280
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.104 kb on + strand, within PGA1_65p00260 at 33.112 kb on - strand, within PGA1_65p00260 at 33.154 kb on + strand, within PGA1_65p00260 at 33.177 kb on - strand, within PGA1_65p00260 at 33.182 kb on - strand, within PGA1_65p00260 at 33.320 kb on + strand, within PGA1_65p00260 at 33.518 kb on + strand, within PGA1_65p00260 at 33.526 kb on - strand, within PGA1_65p00260 at 33.553 kb on + strand, within PGA1_65p00260 at 33.604 kb on + strand, within PGA1_65p00260 at 33.645 kb on + strand, within PGA1_65p00260 at 33.999 kb on + strand at 34.052 kb on + strand at 34.697 kb on - strand, within PGA1_65p00270 at 34.969 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.260 kb on - strand, within PGA1_65p00270 at 35.513 kb on - strand, within PGA1_65p00270 at 35.629 kb on - strand, within PGA1_65p00270 at 35.647 kb on - strand, within PGA1_65p00270 at 36.199 kb on + strand at 36.518 kb on + strand at 36.518 kb on + strand at 36.526 kb on - strand at 36.547 kb on + strand at 37.231 kb on + strand, within PGA1_65p00280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 33,104 + PGA1_65p00260 0.36 -1.4 33,112 - PGA1_65p00260 0.37 -1.9 33,154 + PGA1_65p00260 0.40 -0.9 33,177 - PGA1_65p00260 0.41 -0.1 33,182 - PGA1_65p00260 0.42 +1.2 33,320 + PGA1_65p00260 0.51 -0.4 33,518 + PGA1_65p00260 0.65 -0.4 33,526 - PGA1_65p00260 0.65 +0.6 33,553 + PGA1_65p00260 0.67 -1.4 33,604 + PGA1_65p00260 0.71 -1.9 33,645 + PGA1_65p00260 0.74 -0.7 33,999 + +0.6 34,052 + +2.6 34,697 - PGA1_65p00270 0.27 -2.5 34,969 - PGA1_65p00270 0.39 +0.3 35,002 - PGA1_65p00270 0.41 +1.6 35,002 - PGA1_65p00270 0.41 +1.2 35,004 + PGA1_65p00270 0.41 +0.6 35,004 + PGA1_65p00270 0.41 +0.6 35,004 + PGA1_65p00270 0.41 +0.6 35,004 + PGA1_65p00270 0.41 +1.6 35,012 - PGA1_65p00270 0.41 +0.6 35,012 - PGA1_65p00270 0.41 -0.7 35,012 - PGA1_65p00270 0.41 -1.7 35,012 - PGA1_65p00270 0.41 -0.9 35,012 - PGA1_65p00270 0.41 -0.4 35,012 - PGA1_65p00270 0.41 -1.9 35,260 - PGA1_65p00270 0.52 -0.4 35,513 - PGA1_65p00270 0.64 -1.4 35,629 - PGA1_65p00270 0.69 -1.4 35,647 - PGA1_65p00270 0.70 -0.7 36,199 + +0.6 36,518 + -1.9 36,518 + +0.6 36,526 - +0.6 36,547 + +0.2 37,231 + PGA1_65p00280 0.52 -0.4
Or see this region's nucleotide sequence