Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01400 and PGA1_262p01410 are separated by 91 nucleotides PGA1_262p01410 and PGA1_262p01420 are separated by 631 nucleotides
PGA1_262p01400: PGA1_262p01400 - dimethylglycine dehydrogenase DmgdH, at 150,455 to 152,875
_262p01400
PGA1_262p01410: PGA1_262p01410 - malate/L-lactate dehydrogenase-like protein, at 152,967 to 153,404
_262p01410
PGA1_262p01420: PGA1_262p01420 - Protein of unknown function (DUF3726)., at 154,036 to 154,686
_262p01420
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 151.986 kb on - strand, within PGA1_262p01400 at 152.006 kb on - strand, within PGA1_262p01400 at 152.418 kb on - strand, within PGA1_262p01400 at 152.423 kb on + strand, within PGA1_262p01400 at 152.446 kb on - strand, within PGA1_262p01400 at 152.749 kb on - strand at 152.792 kb on - strand at 152.792 kb on - strand at 152.856 kb on + strand at 153.193 kb on + strand, within PGA1_262p01410 at 153.201 kb on - strand, within PGA1_262p01410 at 153.342 kb on - strand, within PGA1_262p01410 at 153.367 kb on - strand at 153.369 kb on - strand at 153.648 kb on - strand at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand at 153.949 kb on + strand at 154.006 kb on - strand at 154.110 kb on + strand, within PGA1_262p01420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 151,986 - PGA1_262p01400 0.63 +0.8 152,006 - PGA1_262p01400 0.64 +0.8 152,418 - PGA1_262p01400 0.81 -0.0 152,423 + PGA1_262p01400 0.81 +1.1 152,446 - PGA1_262p01400 0.82 -1.7 152,749 - +0.4 152,792 - +4.7 152,792 - +0.2 152,856 + -1.5 153,193 + PGA1_262p01410 0.52 -0.4 153,201 - PGA1_262p01410 0.53 -2.1 153,342 - PGA1_262p01410 0.86 +0.4 153,367 - -0.6 153,369 - +1.0 153,648 - +0.9 153,691 - +1.2 153,749 - +1.0 153,749 - +0.4 153,949 + +0.5 154,006 - -0.1 154,110 + PGA1_262p01420 0.11 -0.7
Or see this region's nucleotide sequence