Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00160 and PGA1_262p00170 overlap by 4 nucleotides PGA1_262p00170 and PGA1_262p00180 are separated by 88 nucleotides PGA1_262p00180 and PGA1_262p00190 are separated by 45 nucleotides
PGA1_262p00160: PGA1_262p00160 - Branched-chain amino acid transport protein (AzlD)., at 20,758 to 21,057
_262p00160
PGA1_262p00170: PGA1_262p00170 - Predicted branched-chain amino acid permease (azaleucine resistance), at 21,054 to 21,770
_262p00170
PGA1_262p00180: PGA1_262p00180 - transcriptional regulator, AsnC family, at 21,859 to 22,332
_262p00180
PGA1_262p00190: PGA1_262p00190 - putative transporter, MFS family, at 22,378 to 23,694
_262p00190
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 20.950 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.025 kb on + strand, within PGA1_262p00160 at 21.025 kb on + strand, within PGA1_262p00160 at 21.033 kb on - strand at 21.033 kb on - strand at 21.068 kb on - strand at 21.126 kb on + strand, within PGA1_262p00170 at 21.218 kb on + strand, within PGA1_262p00170 at 21.220 kb on + strand, within PGA1_262p00170 at 21.228 kb on - strand, within PGA1_262p00170 at 21.278 kb on - strand, within PGA1_262p00170 at 21.314 kb on - strand, within PGA1_262p00170 at 21.356 kb on - strand, within PGA1_262p00170 at 21.356 kb on - strand, within PGA1_262p00170 at 21.378 kb on - strand, within PGA1_262p00170 at 21.413 kb on - strand, within PGA1_262p00170 at 21.420 kb on - strand, within PGA1_262p00170 at 21.531 kb on + strand, within PGA1_262p00170 at 21.546 kb on + strand, within PGA1_262p00170 at 21.687 kb on - strand, within PGA1_262p00170 at 21.786 kb on + strand at 21.914 kb on - strand, within PGA1_262p00180 at 21.914 kb on - strand, within PGA1_262p00180 at 21.939 kb on - strand, within PGA1_262p00180 at 21.968 kb on - strand, within PGA1_262p00180 at 21.981 kb on - strand, within PGA1_262p00180 at 21.981 kb on - strand, within PGA1_262p00180 at 22.001 kb on + strand, within PGA1_262p00180 at 22.036 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.100 kb on - strand, within PGA1_262p00180 at 22.100 kb on - strand, within PGA1_262p00180 at 22.200 kb on - strand, within PGA1_262p00180 at 22.307 kb on - strand at 22.362 kb on + strand at 22.397 kb on - strand at 22.434 kb on + strand at 22.628 kb on + strand, within PGA1_262p00190 at 22.659 kb on + strand, within PGA1_262p00190 at 22.727 kb on + strand, within PGA1_262p00190 at 22.727 kb on + strand, within PGA1_262p00190 at 22.727 kb on + strand, within PGA1_262p00190 at 22.741 kb on - strand, within PGA1_262p00190 at 23.009 kb on - strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.073 kb on + strand, within PGA1_262p00190 at 23.081 kb on - strand, within PGA1_262p00190 at 23.218 kb on + strand, within PGA1_262p00190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 20,950 + PGA1_262p00160 0.64 +1.0 21,010 + PGA1_262p00160 0.84 -1.6 21,010 + PGA1_262p00160 0.84 -1.5 21,010 + PGA1_262p00160 0.84 -0.7 21,010 + PGA1_262p00160 0.84 +1.7 21,025 + PGA1_262p00160 0.89 +0.4 21,025 + PGA1_262p00160 0.89 -1.2 21,033 - +0.2 21,033 - +0.3 21,068 - +1.5 21,126 + PGA1_262p00170 0.10 -0.2 21,218 + PGA1_262p00170 0.23 +0.5 21,220 + PGA1_262p00170 0.23 -0.8 21,228 - PGA1_262p00170 0.24 +1.7 21,278 - PGA1_262p00170 0.31 -0.9 21,314 - PGA1_262p00170 0.36 +0.2 21,356 - PGA1_262p00170 0.42 +0.1 21,356 - PGA1_262p00170 0.42 -1.5 21,378 - PGA1_262p00170 0.45 -0.5 21,413 - PGA1_262p00170 0.50 -0.3 21,420 - PGA1_262p00170 0.51 +0.3 21,531 + PGA1_262p00170 0.67 -0.3 21,546 + PGA1_262p00170 0.69 +1.3 21,687 - PGA1_262p00170 0.88 +0.2 21,786 + -0.1 21,914 - PGA1_262p00180 0.12 -0.5 21,914 - PGA1_262p00180 0.12 -0.2 21,939 - PGA1_262p00180 0.17 -0.4 21,968 - PGA1_262p00180 0.23 -0.7 21,981 - PGA1_262p00180 0.26 -2.7 21,981 - PGA1_262p00180 0.26 -0.4 22,001 + PGA1_262p00180 0.30 -2.7 22,036 + PGA1_262p00180 0.37 -1.2 22,052 + PGA1_262p00180 0.41 -2.6 22,052 + PGA1_262p00180 0.41 -0.1 22,052 + PGA1_262p00180 0.41 -0.3 22,052 + PGA1_262p00180 0.41 +0.0 22,052 + PGA1_262p00180 0.41 +0.1 22,060 - PGA1_262p00180 0.42 -3.4 22,060 - PGA1_262p00180 0.42 -0.3 22,060 - PGA1_262p00180 0.42 +0.2 22,060 - PGA1_262p00180 0.42 -2.8 22,100 - PGA1_262p00180 0.51 -0.8 22,100 - PGA1_262p00180 0.51 +0.3 22,200 - PGA1_262p00180 0.72 -0.7 22,307 - -0.4 22,362 + +1.0 22,397 - -0.6 22,434 + -0.0 22,628 + PGA1_262p00190 0.19 +2.4 22,659 + PGA1_262p00190 0.21 -3.1 22,727 + PGA1_262p00190 0.26 -3.7 22,727 + PGA1_262p00190 0.26 -0.2 22,727 + PGA1_262p00190 0.26 +0.3 22,741 - PGA1_262p00190 0.28 -0.6 23,009 - PGA1_262p00190 0.48 +1.2 23,052 + PGA1_262p00190 0.51 -0.5 23,052 + PGA1_262p00190 0.51 +0.6 23,052 + PGA1_262p00190 0.51 -1.7 23,052 + PGA1_262p00190 0.51 +0.1 23,052 + PGA1_262p00190 0.51 -0.1 23,060 - PGA1_262p00190 0.52 -1.2 23,060 - PGA1_262p00190 0.52 -1.8 23,060 - PGA1_262p00190 0.52 -2.6 23,060 - PGA1_262p00190 0.52 -2.1 23,060 - PGA1_262p00190 0.52 +0.6 23,060 - PGA1_262p00190 0.52 -1.2 23,060 - PGA1_262p00190 0.52 +0.2 23,060 - PGA1_262p00190 0.52 +0.2 23,073 + PGA1_262p00190 0.53 +0.2 23,081 - PGA1_262p00190 0.53 +0.2 23,218 + PGA1_262p00190 0.64 -1.4
Or see this region's nucleotide sequence