Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36460

Experiment: m.b. Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c36440 and PGA1_c36450 are separated by 87 nucleotidesPGA1_c36450 and PGA1_c36460 are separated by 109 nucleotidesPGA1_c36460 and PGA1_c36470 are separated by 5 nucleotides PGA1_c36440: PGA1_c36440 - Domain of unknown function (DU1801)., at 3,813,919 to 3,814,365 _c36440 PGA1_c36450: PGA1_c36450 - putative DNA-binding protein, at 3,814,453 to 3,815,187 _c36450 PGA1_c36460: PGA1_c36460 - putative lytic murein transglycosylase, at 3,815,297 to 3,816,691 _c36460 PGA1_c36470: PGA1_c36470 - putative ubiquinone biosynthesis protein UbiB, at 3,816,697 to 3,818,232 _c36470 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3814.299 kb on + strand, within PGA1_c36440at 3814.348 kb on + strandat 3814.360 kb on + strandat 3814.360 kb on + strandat 3814.360 kb on + strandat 3814.368 kb on - strandat 3814.399 kb on + strandat 3814.455 kb on + strandat 3814.455 kb on + strandat 3814.463 kb on - strandat 3814.463 kb on - strandat 3814.502 kb on + strandat 3814.502 kb on - strandat 3814.576 kb on + strand, within PGA1_c36450at 3814.579 kb on + strand, within PGA1_c36450at 3814.618 kb on + strand, within PGA1_c36450at 3814.633 kb on - strand, within PGA1_c36450at 3814.672 kb on - strand, within PGA1_c36450at 3814.686 kb on - strand, within PGA1_c36450at 3814.686 kb on - strand, within PGA1_c36450at 3814.745 kb on - strand, within PGA1_c36450at 3814.826 kb on - strand, within PGA1_c36450at 3814.865 kb on + strand, within PGA1_c36450at 3814.953 kb on - strand, within PGA1_c36450at 3814.964 kb on + strand, within PGA1_c36450at 3814.968 kb on + strand, within PGA1_c36450at 3814.976 kb on - strand, within PGA1_c36450at 3814.982 kb on + strand, within PGA1_c36450at 3815.054 kb on + strand, within PGA1_c36450at 3815.055 kb on + strand, within PGA1_c36450at 3815.071 kb on - strand, within PGA1_c36450at 3815.121 kb on + strandat 3815.124 kb on - strandat 3815.176 kb on + strandat 3815.221 kb on + strandat 3815.244 kb on - strandat 3815.263 kb on + strandat 3815.263 kb on + strandat 3815.263 kb on + strandat 3815.263 kb on + strandat 3815.263 kb on + strandat 3815.263 kb on + strandat 3815.271 kb on - strandat 3815.271 kb on - strandat 3815.271 kb on - strandat 3815.271 kb on - strandat 3815.580 kb on + strand, within PGA1_c36460at 3815.592 kb on + strand, within PGA1_c36460at 3815.620 kb on + strand, within PGA1_c36460at 3815.620 kb on + strand, within PGA1_c36460at 3815.628 kb on + strand, within PGA1_c36460at 3815.642 kb on + strand, within PGA1_c36460at 3815.642 kb on + strand, within PGA1_c36460at 3815.642 kb on + strand, within PGA1_c36460at 3815.743 kb on - strand, within PGA1_c36460at 3815.783 kb on + strand, within PGA1_c36460at 3815.786 kb on - strand, within PGA1_c36460at 3815.805 kb on + strand, within PGA1_c36460at 3815.878 kb on + strand, within PGA1_c36460at 3815.928 kb on - strand, within PGA1_c36460at 3816.086 kb on + strand, within PGA1_c36460at 3816.087 kb on - strand, within PGA1_c36460at 3816.097 kb on + strand, within PGA1_c36460at 3816.099 kb on - strand, within PGA1_c36460at 3816.104 kb on - strand, within PGA1_c36460at 3816.104 kb on - strand, within PGA1_c36460at 3816.113 kb on + strand, within PGA1_c36460at 3816.121 kb on - strand, within PGA1_c36460at 3816.191 kb on + strand, within PGA1_c36460at 3816.199 kb on - strand, within PGA1_c36460at 3816.204 kb on + strand, within PGA1_c36460at 3816.212 kb on - strand, within PGA1_c36460at 3816.227 kb on + strand, within PGA1_c36460at 3816.235 kb on - strand, within PGA1_c36460at 3816.235 kb on - strand, within PGA1_c36460at 3816.274 kb on + strand, within PGA1_c36460at 3816.282 kb on - strand, within PGA1_c36460at 3816.282 kb on - strand, within PGA1_c36460at 3816.282 kb on - strand, within PGA1_c36460at 3816.284 kb on - strand, within PGA1_c36460at 3816.295 kb on + strand, within PGA1_c36460at 3816.357 kb on - strand, within PGA1_c36460at 3816.409 kb on + strand, within PGA1_c36460at 3816.409 kb on + strand, within PGA1_c36460at 3816.417 kb on - strand, within PGA1_c36460at 3816.417 kb on - strand, within PGA1_c36460at 3816.417 kb on - strand, within PGA1_c36460at 3816.417 kb on - strand, within PGA1_c36460at 3816.473 kb on + strand, within PGA1_c36460at 3816.481 kb on - strand, within PGA1_c36460at 3816.512 kb on - strand, within PGA1_c36460at 3816.639 kb on + strandat 3816.690 kb on + strandat 3816.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM
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3,814,299 + PGA1_c36440 0.85 -1.1
3,814,348 + -1.5
3,814,360 + -1.0
3,814,360 + +1.1
3,814,360 + -2.5
3,814,368 - +0.2
3,814,399 + +0.3
3,814,455 + +0.4
3,814,455 + -0.4
3,814,463 - +2.6
3,814,463 - -0.8
3,814,502 + +2.0
3,814,502 - -0.0
3,814,576 + PGA1_c36450 0.17 +0.9
3,814,579 + PGA1_c36450 0.17 -1.4
3,814,618 + PGA1_c36450 0.22 -0.4
3,814,633 - PGA1_c36450 0.24 -1.2
3,814,672 - PGA1_c36450 0.30 -1.1
3,814,686 - PGA1_c36450 0.32 +0.9
3,814,686 - PGA1_c36450 0.32 +1.0
3,814,745 - PGA1_c36450 0.40 +0.2
3,814,826 - PGA1_c36450 0.51 +2.0
3,814,865 + PGA1_c36450 0.56 -0.3
3,814,953 - PGA1_c36450 0.68 -0.5
3,814,964 + PGA1_c36450 0.70 +0.7
3,814,968 + PGA1_c36450 0.70 +0.8
3,814,976 - PGA1_c36450 0.71 +0.4
3,814,982 + PGA1_c36450 0.72 +0.3
3,815,054 + PGA1_c36450 0.82 +0.1
3,815,055 + PGA1_c36450 0.82 -2.0
3,815,071 - PGA1_c36450 0.84 -1.4
3,815,121 + -1.2
3,815,124 - -2.4
3,815,176 + +0.5
3,815,221 + -0.5
3,815,244 - -0.8
3,815,263 + +0.3
3,815,263 + +0.9
3,815,263 + +1.4
3,815,263 + +0.1
3,815,263 + -1.6
3,815,263 + -0.9
3,815,271 - -0.9
3,815,271 - -1.7
3,815,271 - +0.9
3,815,271 - +1.0
3,815,580 + PGA1_c36460 0.20 -2.3
3,815,592 + PGA1_c36460 0.21 -2.1
3,815,620 + PGA1_c36460 0.23 -1.4
3,815,620 + PGA1_c36460 0.23 -2.0
3,815,628 + PGA1_c36460 0.24 +0.6
3,815,642 + PGA1_c36460 0.25 +0.6
3,815,642 + PGA1_c36460 0.25 +0.7
3,815,642 + PGA1_c36460 0.25 -1.4
3,815,743 - PGA1_c36460 0.32 -2.1
3,815,783 + PGA1_c36460 0.35 +0.8
3,815,786 - PGA1_c36460 0.35 -0.2
3,815,805 + PGA1_c36460 0.36 -1.9
3,815,878 + PGA1_c36460 0.42 -0.8
3,815,928 - PGA1_c36460 0.45 -0.6
3,816,086 + PGA1_c36460 0.57 -0.2
3,816,087 - PGA1_c36460 0.57 -1.2
3,816,097 + PGA1_c36460 0.57 -0.6
3,816,099 - PGA1_c36460 0.57 +0.7
3,816,104 - PGA1_c36460 0.58 -0.6
3,816,104 - PGA1_c36460 0.58 -0.6
3,816,113 + PGA1_c36460 0.58 -0.5
3,816,121 - PGA1_c36460 0.59 -2.4
3,816,191 + PGA1_c36460 0.64 -1.6
3,816,199 - PGA1_c36460 0.65 -3.1
3,816,204 + PGA1_c36460 0.65 -2.0
3,816,212 - PGA1_c36460 0.66 -0.1
3,816,227 + PGA1_c36460 0.67 -0.5
3,816,235 - PGA1_c36460 0.67 +0.1
3,816,235 - PGA1_c36460 0.67 -1.3
3,816,274 + PGA1_c36460 0.70 -0.2
3,816,282 - PGA1_c36460 0.71 -2.3
3,816,282 - PGA1_c36460 0.71 -1.7
3,816,282 - PGA1_c36460 0.71 -0.2
3,816,284 - PGA1_c36460 0.71 -1.1
3,816,295 + PGA1_c36460 0.72 -0.6
3,816,357 - PGA1_c36460 0.76 -0.6
3,816,409 + PGA1_c36460 0.80 -1.0
3,816,409 + PGA1_c36460 0.80 +0.6
3,816,417 - PGA1_c36460 0.80 -2.1
3,816,417 - PGA1_c36460 0.80 +1.0
3,816,417 - PGA1_c36460 0.80 +1.2
3,816,417 - PGA1_c36460 0.80 +0.2
3,816,473 + PGA1_c36460 0.84 -0.7
3,816,481 - PGA1_c36460 0.85 -2.6
3,816,512 - PGA1_c36460 0.87 -0.7
3,816,639 + +0.6
3,816,690 + -3.1
3,816,699 + -0.9

Or see this region's nucleotide sequence