Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c36440 and PGA1_c36450 are separated by 87 nucleotides PGA1_c36450 and PGA1_c36460 are separated by 109 nucleotides PGA1_c36460 and PGA1_c36470 are separated by 5 nucleotides
PGA1_c36440: PGA1_c36440 - Domain of unknown function (DU1801)., at 3,813,919 to 3,814,365
_c36440
PGA1_c36450: PGA1_c36450 - putative DNA-binding protein, at 3,814,453 to 3,815,187
_c36450
PGA1_c36460: PGA1_c36460 - putative lytic murein transglycosylase, at 3,815,297 to 3,816,691
_c36460
PGA1_c36470: PGA1_c36470 - putative ubiquinone biosynthesis protein UbiB, at 3,816,697 to 3,818,232
_c36470
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3814.299 kb on + strand, within PGA1_c36440 at 3814.348 kb on + strand at 3814.360 kb on + strand at 3814.360 kb on + strand at 3814.360 kb on + strand at 3814.368 kb on - strand at 3814.399 kb on + strand at 3814.455 kb on + strand at 3814.455 kb on + strand at 3814.463 kb on - strand at 3814.463 kb on - strand at 3814.502 kb on + strand at 3814.502 kb on - strand at 3814.576 kb on + strand, within PGA1_c36450 at 3814.579 kb on + strand, within PGA1_c36450 at 3814.618 kb on + strand, within PGA1_c36450 at 3814.633 kb on - strand, within PGA1_c36450 at 3814.672 kb on - strand, within PGA1_c36450 at 3814.686 kb on - strand, within PGA1_c36450 at 3814.686 kb on - strand, within PGA1_c36450 at 3814.745 kb on - strand, within PGA1_c36450 at 3814.826 kb on - strand, within PGA1_c36450 at 3814.865 kb on + strand, within PGA1_c36450 at 3814.953 kb on - strand, within PGA1_c36450 at 3814.964 kb on + strand, within PGA1_c36450 at 3814.968 kb on + strand, within PGA1_c36450 at 3814.976 kb on - strand, within PGA1_c36450 at 3814.982 kb on + strand, within PGA1_c36450 at 3815.054 kb on + strand, within PGA1_c36450 at 3815.055 kb on + strand, within PGA1_c36450 at 3815.071 kb on - strand, within PGA1_c36450 at 3815.121 kb on + strand at 3815.124 kb on - strand at 3815.176 kb on + strand at 3815.221 kb on + strand at 3815.244 kb on - strand at 3815.263 kb on + strand at 3815.263 kb on + strand at 3815.263 kb on + strand at 3815.263 kb on + strand at 3815.263 kb on + strand at 3815.263 kb on + strand at 3815.271 kb on - strand at 3815.271 kb on - strand at 3815.271 kb on - strand at 3815.271 kb on - strand at 3815.580 kb on + strand, within PGA1_c36460 at 3815.592 kb on + strand, within PGA1_c36460 at 3815.620 kb on + strand, within PGA1_c36460 at 3815.620 kb on + strand, within PGA1_c36460 at 3815.628 kb on + strand, within PGA1_c36460 at 3815.642 kb on + strand, within PGA1_c36460 at 3815.642 kb on + strand, within PGA1_c36460 at 3815.642 kb on + strand, within PGA1_c36460 at 3815.743 kb on - strand, within PGA1_c36460 at 3815.783 kb on + strand, within PGA1_c36460 at 3815.786 kb on - strand, within PGA1_c36460 at 3815.805 kb on + strand, within PGA1_c36460 at 3815.878 kb on + strand, within PGA1_c36460 at 3815.928 kb on - strand, within PGA1_c36460 at 3816.086 kb on + strand, within PGA1_c36460 at 3816.087 kb on - strand, within PGA1_c36460 at 3816.097 kb on + strand, within PGA1_c36460 at 3816.099 kb on - strand, within PGA1_c36460 at 3816.104 kb on - strand, within PGA1_c36460 at 3816.104 kb on - strand, within PGA1_c36460 at 3816.113 kb on + strand, within PGA1_c36460 at 3816.121 kb on - strand, within PGA1_c36460 at 3816.191 kb on + strand, within PGA1_c36460 at 3816.199 kb on - strand, within PGA1_c36460 at 3816.204 kb on + strand, within PGA1_c36460 at 3816.212 kb on - strand, within PGA1_c36460 at 3816.227 kb on + strand, within PGA1_c36460 at 3816.235 kb on - strand, within PGA1_c36460 at 3816.235 kb on - strand, within PGA1_c36460 at 3816.274 kb on + strand, within PGA1_c36460 at 3816.282 kb on - strand, within PGA1_c36460 at 3816.282 kb on - strand, within PGA1_c36460 at 3816.282 kb on - strand, within PGA1_c36460 at 3816.284 kb on - strand, within PGA1_c36460 at 3816.295 kb on + strand, within PGA1_c36460 at 3816.357 kb on - strand, within PGA1_c36460 at 3816.409 kb on + strand, within PGA1_c36460 at 3816.409 kb on + strand, within PGA1_c36460 at 3816.417 kb on - strand, within PGA1_c36460 at 3816.417 kb on - strand, within PGA1_c36460 at 3816.417 kb on - strand, within PGA1_c36460 at 3816.417 kb on - strand, within PGA1_c36460 at 3816.473 kb on + strand, within PGA1_c36460 at 3816.481 kb on - strand, within PGA1_c36460 at 3816.512 kb on - strand, within PGA1_c36460 at 3816.639 kb on + strand at 3816.690 kb on + strand at 3816.699 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 3,814,299 + PGA1_c36440 0.85 -1.1 3,814,348 + -1.5 3,814,360 + -1.0 3,814,360 + +1.1 3,814,360 + -2.5 3,814,368 - +0.2 3,814,399 + +0.3 3,814,455 + +0.4 3,814,455 + -0.4 3,814,463 - +2.6 3,814,463 - -0.8 3,814,502 + +2.0 3,814,502 - -0.0 3,814,576 + PGA1_c36450 0.17 +0.9 3,814,579 + PGA1_c36450 0.17 -1.4 3,814,618 + PGA1_c36450 0.22 -0.4 3,814,633 - PGA1_c36450 0.24 -1.2 3,814,672 - PGA1_c36450 0.30 -1.1 3,814,686 - PGA1_c36450 0.32 +0.9 3,814,686 - PGA1_c36450 0.32 +1.0 3,814,745 - PGA1_c36450 0.40 +0.2 3,814,826 - PGA1_c36450 0.51 +2.0 3,814,865 + PGA1_c36450 0.56 -0.3 3,814,953 - PGA1_c36450 0.68 -0.5 3,814,964 + PGA1_c36450 0.70 +0.7 3,814,968 + PGA1_c36450 0.70 +0.8 3,814,976 - PGA1_c36450 0.71 +0.4 3,814,982 + PGA1_c36450 0.72 +0.3 3,815,054 + PGA1_c36450 0.82 +0.1 3,815,055 + PGA1_c36450 0.82 -2.0 3,815,071 - PGA1_c36450 0.84 -1.4 3,815,121 + -1.2 3,815,124 - -2.4 3,815,176 + +0.5 3,815,221 + -0.5 3,815,244 - -0.8 3,815,263 + +0.3 3,815,263 + +0.9 3,815,263 + +1.4 3,815,263 + +0.1 3,815,263 + -1.6 3,815,263 + -0.9 3,815,271 - -0.9 3,815,271 - -1.7 3,815,271 - +0.9 3,815,271 - +1.0 3,815,580 + PGA1_c36460 0.20 -2.3 3,815,592 + PGA1_c36460 0.21 -2.1 3,815,620 + PGA1_c36460 0.23 -1.4 3,815,620 + PGA1_c36460 0.23 -2.0 3,815,628 + PGA1_c36460 0.24 +0.6 3,815,642 + PGA1_c36460 0.25 +0.6 3,815,642 + PGA1_c36460 0.25 +0.7 3,815,642 + PGA1_c36460 0.25 -1.4 3,815,743 - PGA1_c36460 0.32 -2.1 3,815,783 + PGA1_c36460 0.35 +0.8 3,815,786 - PGA1_c36460 0.35 -0.2 3,815,805 + PGA1_c36460 0.36 -1.9 3,815,878 + PGA1_c36460 0.42 -0.8 3,815,928 - PGA1_c36460 0.45 -0.6 3,816,086 + PGA1_c36460 0.57 -0.2 3,816,087 - PGA1_c36460 0.57 -1.2 3,816,097 + PGA1_c36460 0.57 -0.6 3,816,099 - PGA1_c36460 0.57 +0.7 3,816,104 - PGA1_c36460 0.58 -0.6 3,816,104 - PGA1_c36460 0.58 -0.6 3,816,113 + PGA1_c36460 0.58 -0.5 3,816,121 - PGA1_c36460 0.59 -2.4 3,816,191 + PGA1_c36460 0.64 -1.6 3,816,199 - PGA1_c36460 0.65 -3.1 3,816,204 + PGA1_c36460 0.65 -2.0 3,816,212 - PGA1_c36460 0.66 -0.1 3,816,227 + PGA1_c36460 0.67 -0.5 3,816,235 - PGA1_c36460 0.67 +0.1 3,816,235 - PGA1_c36460 0.67 -1.3 3,816,274 + PGA1_c36460 0.70 -0.2 3,816,282 - PGA1_c36460 0.71 -2.3 3,816,282 - PGA1_c36460 0.71 -1.7 3,816,282 - PGA1_c36460 0.71 -0.2 3,816,284 - PGA1_c36460 0.71 -1.1 3,816,295 + PGA1_c36460 0.72 -0.6 3,816,357 - PGA1_c36460 0.76 -0.6 3,816,409 + PGA1_c36460 0.80 -1.0 3,816,409 + PGA1_c36460 0.80 +0.6 3,816,417 - PGA1_c36460 0.80 -2.1 3,816,417 - PGA1_c36460 0.80 +1.0 3,816,417 - PGA1_c36460 0.80 +1.2 3,816,417 - PGA1_c36460 0.80 +0.2 3,816,473 + PGA1_c36460 0.84 -0.7 3,816,481 - PGA1_c36460 0.85 -2.6 3,816,512 - PGA1_c36460 0.87 -0.7 3,816,639 + +0.6 3,816,690 + -3.1 3,816,699 + -0.9
Or see this region's nucleotide sequence