Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35250

Experiment: m.b. Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35240 and PGA1_c35250 are separated by 12 nucleotidesPGA1_c35250 and PGA1_c35260 are separated by 1 nucleotidesPGA1_c35260 and PGA1_c35270 are separated by 334 nucleotides PGA1_c35240: PGA1_c35240 - ATP-dependent hsl protease ATP-binding subunit HslU, at 3,694,953 to 3,696,263 _c35240 PGA1_c35250: PGA1_c35250 - hypothetical protein, at 3,696,276 to 3,697,346 _c35250 PGA1_c35260: PGA1_c35260 - ATP-dependent protease HslV, at 3,697,348 to 3,697,911 _c35260 PGA1_c35270: PGA1_c35270 - Uncharacterized conserved small protein, at 3,698,246 to 3,698,440 _c35270 Position (kb) 3696 3697 3698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3695.313 kb on + strand, within PGA1_c35240at 3695.313 kb on + strand, within PGA1_c35240at 3695.389 kb on + strand, within PGA1_c35240at 3695.397 kb on - strand, within PGA1_c35240at 3695.397 kb on - strand, within PGA1_c35240at 3695.497 kb on + strand, within PGA1_c35240at 3695.505 kb on - strand, within PGA1_c35240at 3695.505 kb on - strand, within PGA1_c35240at 3695.505 kb on - strand, within PGA1_c35240at 3695.560 kb on + strand, within PGA1_c35240at 3695.586 kb on - strand, within PGA1_c35240at 3695.615 kb on + strand, within PGA1_c35240at 3695.617 kb on + strand, within PGA1_c35240at 3695.617 kb on + strand, within PGA1_c35240at 3695.617 kb on + strand, within PGA1_c35240at 3695.625 kb on - strand, within PGA1_c35240at 3695.691 kb on - strand, within PGA1_c35240at 3695.743 kb on + strand, within PGA1_c35240at 3695.750 kb on + strand, within PGA1_c35240at 3695.750 kb on + strand, within PGA1_c35240at 3695.750 kb on + strand, within PGA1_c35240at 3695.758 kb on - strand, within PGA1_c35240at 3695.758 kb on - strand, within PGA1_c35240at 3695.811 kb on - strand, within PGA1_c35240at 3695.896 kb on + strand, within PGA1_c35240at 3695.904 kb on - strand, within PGA1_c35240at 3695.916 kb on + strand, within PGA1_c35240at 3695.922 kb on + strand, within PGA1_c35240at 3695.947 kb on + strand, within PGA1_c35240at 3695.975 kb on - strand, within PGA1_c35240at 3696.027 kb on + strand, within PGA1_c35240at 3696.139 kb on + strandat 3696.248 kb on + strandat 3696.263 kb on + strandat 3696.320 kb on - strandat 3696.345 kb on - strandat 3696.571 kb on - strand, within PGA1_c35250at 3696.585 kb on - strand, within PGA1_c35250at 3696.585 kb on - strand, within PGA1_c35250at 3696.598 kb on + strand, within PGA1_c35250at 3696.618 kb on + strand, within PGA1_c35250at 3696.619 kb on - strand, within PGA1_c35250at 3696.630 kb on + strand, within PGA1_c35250at 3696.635 kb on + strand, within PGA1_c35250at 3696.698 kb on + strand, within PGA1_c35250at 3696.704 kb on + strand, within PGA1_c35250at 3696.704 kb on + strand, within PGA1_c35250at 3696.704 kb on + strand, within PGA1_c35250at 3696.776 kb on + strand, within PGA1_c35250at 3696.817 kb on - strand, within PGA1_c35250at 3696.817 kb on - strand, within PGA1_c35250at 3696.900 kb on - strand, within PGA1_c35250at 3696.902 kb on + strand, within PGA1_c35250at 3696.910 kb on - strand, within PGA1_c35250at 3696.935 kb on - strand, within PGA1_c35250at 3697.017 kb on - strand, within PGA1_c35250at 3697.060 kb on + strand, within PGA1_c35250at 3697.068 kb on - strand, within PGA1_c35250at 3697.068 kb on - strand, within PGA1_c35250at 3697.068 kb on - strand, within PGA1_c35250at 3697.068 kb on - strand, within PGA1_c35250at 3697.068 kb on - strand, within PGA1_c35250at 3697.078 kb on - strand, within PGA1_c35250at 3697.101 kb on + strand, within PGA1_c35250at 3697.115 kb on - strand, within PGA1_c35250at 3697.115 kb on - strand, within PGA1_c35250at 3697.184 kb on + strand, within PGA1_c35250at 3697.191 kb on + strand, within PGA1_c35250at 3697.192 kb on + strand, within PGA1_c35250at 3697.192 kb on + strand, within PGA1_c35250at 3697.192 kb on + strand, within PGA1_c35250at 3697.192 kb on + strand, within PGA1_c35250at 3697.200 kb on - strand, within PGA1_c35250at 3697.200 kb on - strand, within PGA1_c35250at 3697.200 kb on - strand, within PGA1_c35250at 3697.200 kb on - strand, within PGA1_c35250at 3697.271 kb on - strandat 3697.298 kb on + strandat 3697.298 kb on + strandat 3697.298 kb on + strandat 3697.298 kb on + strandat 3697.298 kb on + strandat 3697.298 kb on + strandat 3697.346 kb on + strandat 3697.349 kb on - strandat 3697.354 kb on - strandat 3697.374 kb on - strandat 3697.469 kb on - strand, within PGA1_c35260at 3697.588 kb on + strand, within PGA1_c35260at 3697.588 kb on + strand, within PGA1_c35260at 3697.716 kb on - strand, within PGA1_c35260at 3697.800 kb on - strand, within PGA1_c35260at 3697.819 kb on + strand, within PGA1_c35260at 3697.931 kb on - strandat 3697.998 kb on - strandat 3698.076 kb on + strandat 3698.265 kb on + strandat 3698.265 kb on + strandat 3698.319 kb on + strand, within PGA1_c35270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM
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3,695,313 + PGA1_c35240 0.27 -0.5
3,695,313 + PGA1_c35240 0.27 +2.4
3,695,389 + PGA1_c35240 0.33 -2.6
3,695,397 - PGA1_c35240 0.34 +0.9
3,695,397 - PGA1_c35240 0.34 +0.8
3,695,497 + PGA1_c35240 0.41 -0.5
3,695,505 - PGA1_c35240 0.42 -0.7
3,695,505 - PGA1_c35240 0.42 -1.8
3,695,505 - PGA1_c35240 0.42 -1.0
3,695,560 + PGA1_c35240 0.46 -2.2
3,695,586 - PGA1_c35240 0.48 -0.7
3,695,615 + PGA1_c35240 0.50 +1.7
3,695,617 + PGA1_c35240 0.51 +1.2
3,695,617 + PGA1_c35240 0.51 +1.6
3,695,617 + PGA1_c35240 0.51 +0.4
3,695,625 - PGA1_c35240 0.51 -1.7
3,695,691 - PGA1_c35240 0.56 -0.1
3,695,743 + PGA1_c35240 0.60 -0.1
3,695,750 + PGA1_c35240 0.61 -1.4
3,695,750 + PGA1_c35240 0.61 +1.5
3,695,750 + PGA1_c35240 0.61 -0.9
3,695,758 - PGA1_c35240 0.61 -0.2
3,695,758 - PGA1_c35240 0.61 +0.7
3,695,811 - PGA1_c35240 0.65 -0.5
3,695,896 + PGA1_c35240 0.72 +0.4
3,695,904 - PGA1_c35240 0.73 +0.9
3,695,916 + PGA1_c35240 0.73 -0.9
3,695,922 + PGA1_c35240 0.74 -0.9
3,695,947 + PGA1_c35240 0.76 -2.1
3,695,975 - PGA1_c35240 0.78 -1.9
3,696,027 + PGA1_c35240 0.82 -0.7
3,696,139 + -1.7
3,696,248 + -1.7
3,696,263 + -0.8
3,696,320 - +0.8
3,696,345 - +0.6
3,696,571 - PGA1_c35250 0.28 -0.1
3,696,585 - PGA1_c35250 0.29 -0.6
3,696,585 - PGA1_c35250 0.29 -1.6
3,696,598 + PGA1_c35250 0.30 -1.4
3,696,618 + PGA1_c35250 0.32 -1.5
3,696,619 - PGA1_c35250 0.32 -0.9
3,696,630 + PGA1_c35250 0.33 -0.5
3,696,635 + PGA1_c35250 0.34 +0.7
3,696,698 + PGA1_c35250 0.39 -1.4
3,696,704 + PGA1_c35250 0.40 -1.7
3,696,704 + PGA1_c35250 0.40 -0.9
3,696,704 + PGA1_c35250 0.40 -0.6
3,696,776 + PGA1_c35250 0.47 +0.1
3,696,817 - PGA1_c35250 0.51 -2.8
3,696,817 - PGA1_c35250 0.51 -2.4
3,696,900 - PGA1_c35250 0.58 -0.8
3,696,902 + PGA1_c35250 0.58 -0.0
3,696,910 - PGA1_c35250 0.59 -1.6
3,696,935 - PGA1_c35250 0.62 +0.8
3,697,017 - PGA1_c35250 0.69 -0.9
3,697,060 + PGA1_c35250 0.73 -1.7
3,697,068 - PGA1_c35250 0.74 -0.0
3,697,068 - PGA1_c35250 0.74 +0.4
3,697,068 - PGA1_c35250 0.74 -0.8
3,697,068 - PGA1_c35250 0.74 -2.6
3,697,068 - PGA1_c35250 0.74 -0.3
3,697,078 - PGA1_c35250 0.75 -0.4
3,697,101 + PGA1_c35250 0.77 -1.6
3,697,115 - PGA1_c35250 0.78 -1.3
3,697,115 - PGA1_c35250 0.78 -1.0
3,697,184 + PGA1_c35250 0.85 +0.5
3,697,191 + PGA1_c35250 0.85 -2.4
3,697,192 + PGA1_c35250 0.86 -2.8
3,697,192 + PGA1_c35250 0.86 -0.6
3,697,192 + PGA1_c35250 0.86 -1.2
3,697,192 + PGA1_c35250 0.86 +0.4
3,697,200 - PGA1_c35250 0.86 -1.0
3,697,200 - PGA1_c35250 0.86 +0.3
3,697,200 - PGA1_c35250 0.86 +0.2
3,697,200 - PGA1_c35250 0.86 -1.8
3,697,271 - -0.8
3,697,298 + -1.1
3,697,298 + +0.3
3,697,298 + -1.6
3,697,298 + -1.2
3,697,298 + -0.4
3,697,298 + -0.8
3,697,346 + +0.8
3,697,349 - -0.3
3,697,354 - +0.7
3,697,374 - +1.3
3,697,469 - PGA1_c35260 0.21 +0.2
3,697,588 + PGA1_c35260 0.43 -1.7
3,697,588 + PGA1_c35260 0.43 -0.1
3,697,716 - PGA1_c35260 0.65 -2.0
3,697,800 - PGA1_c35260 0.80 +0.2
3,697,819 + PGA1_c35260 0.84 -0.3
3,697,931 - -2.8
3,697,998 - -0.1
3,698,076 + +0.3
3,698,265 + +0.6
3,698,265 + -0.6
3,698,319 + PGA1_c35270 0.37 -0.1

Or see this region's nucleotide sequence