Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35240 and PGA1_c35250 are separated by 12 nucleotides PGA1_c35250 and PGA1_c35260 are separated by 1 nucleotides PGA1_c35260 and PGA1_c35270 are separated by 334 nucleotides
PGA1_c35240: PGA1_c35240 - ATP-dependent hsl protease ATP-binding subunit HslU, at 3,694,953 to 3,696,263
_c35240
PGA1_c35250: PGA1_c35250 - hypothetical protein, at 3,696,276 to 3,697,346
_c35250
PGA1_c35260: PGA1_c35260 - ATP-dependent protease HslV, at 3,697,348 to 3,697,911
_c35260
PGA1_c35270: PGA1_c35270 - Uncharacterized conserved small protein, at 3,698,246 to 3,698,440
_c35270
Position (kb)
3696
3697
3698 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3695.313 kb on + strand, within PGA1_c35240 at 3695.313 kb on + strand, within PGA1_c35240 at 3695.389 kb on + strand, within PGA1_c35240 at 3695.397 kb on - strand, within PGA1_c35240 at 3695.397 kb on - strand, within PGA1_c35240 at 3695.497 kb on + strand, within PGA1_c35240 at 3695.505 kb on - strand, within PGA1_c35240 at 3695.505 kb on - strand, within PGA1_c35240 at 3695.505 kb on - strand, within PGA1_c35240 at 3695.560 kb on + strand, within PGA1_c35240 at 3695.586 kb on - strand, within PGA1_c35240 at 3695.615 kb on + strand, within PGA1_c35240 at 3695.617 kb on + strand, within PGA1_c35240 at 3695.617 kb on + strand, within PGA1_c35240 at 3695.617 kb on + strand, within PGA1_c35240 at 3695.625 kb on - strand, within PGA1_c35240 at 3695.691 kb on - strand, within PGA1_c35240 at 3695.743 kb on + strand, within PGA1_c35240 at 3695.750 kb on + strand, within PGA1_c35240 at 3695.750 kb on + strand, within PGA1_c35240 at 3695.750 kb on + strand, within PGA1_c35240 at 3695.758 kb on - strand, within PGA1_c35240 at 3695.758 kb on - strand, within PGA1_c35240 at 3695.811 kb on - strand, within PGA1_c35240 at 3695.896 kb on + strand, within PGA1_c35240 at 3695.904 kb on - strand, within PGA1_c35240 at 3695.916 kb on + strand, within PGA1_c35240 at 3695.922 kb on + strand, within PGA1_c35240 at 3695.947 kb on + strand, within PGA1_c35240 at 3695.975 kb on - strand, within PGA1_c35240 at 3696.027 kb on + strand, within PGA1_c35240 at 3696.139 kb on + strand at 3696.248 kb on + strand at 3696.263 kb on + strand at 3696.320 kb on - strand at 3696.345 kb on - strand at 3696.571 kb on - strand, within PGA1_c35250 at 3696.585 kb on - strand, within PGA1_c35250 at 3696.585 kb on - strand, within PGA1_c35250 at 3696.598 kb on + strand, within PGA1_c35250 at 3696.618 kb on + strand, within PGA1_c35250 at 3696.619 kb on - strand, within PGA1_c35250 at 3696.630 kb on + strand, within PGA1_c35250 at 3696.635 kb on + strand, within PGA1_c35250 at 3696.698 kb on + strand, within PGA1_c35250 at 3696.704 kb on + strand, within PGA1_c35250 at 3696.704 kb on + strand, within PGA1_c35250 at 3696.704 kb on + strand, within PGA1_c35250 at 3696.776 kb on + strand, within PGA1_c35250 at 3696.817 kb on - strand, within PGA1_c35250 at 3696.817 kb on - strand, within PGA1_c35250 at 3696.900 kb on - strand, within PGA1_c35250 at 3696.902 kb on + strand, within PGA1_c35250 at 3696.910 kb on - strand, within PGA1_c35250 at 3696.935 kb on - strand, within PGA1_c35250 at 3697.017 kb on - strand, within PGA1_c35250 at 3697.060 kb on + strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.068 kb on - strand, within PGA1_c35250 at 3697.078 kb on - strand, within PGA1_c35250 at 3697.101 kb on + strand, within PGA1_c35250 at 3697.115 kb on - strand, within PGA1_c35250 at 3697.115 kb on - strand, within PGA1_c35250 at 3697.184 kb on + strand, within PGA1_c35250 at 3697.191 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.192 kb on + strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.200 kb on - strand, within PGA1_c35250 at 3697.271 kb on - strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.298 kb on + strand at 3697.346 kb on + strand at 3697.349 kb on - strand at 3697.354 kb on - strand at 3697.374 kb on - strand at 3697.469 kb on - strand, within PGA1_c35260 at 3697.588 kb on + strand, within PGA1_c35260 at 3697.588 kb on + strand, within PGA1_c35260 at 3697.716 kb on - strand, within PGA1_c35260 at 3697.800 kb on - strand, within PGA1_c35260 at 3697.819 kb on + strand, within PGA1_c35260 at 3697.931 kb on - strand at 3697.998 kb on - strand at 3698.076 kb on + strand at 3698.265 kb on + strand at 3698.265 kb on + strand at 3698.319 kb on + strand, within PGA1_c35270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 3,695,313 + PGA1_c35240 0.27 -0.5 3,695,313 + PGA1_c35240 0.27 +2.4 3,695,389 + PGA1_c35240 0.33 -2.6 3,695,397 - PGA1_c35240 0.34 +0.9 3,695,397 - PGA1_c35240 0.34 +0.8 3,695,497 + PGA1_c35240 0.41 -0.5 3,695,505 - PGA1_c35240 0.42 -0.7 3,695,505 - PGA1_c35240 0.42 -1.8 3,695,505 - PGA1_c35240 0.42 -1.0 3,695,560 + PGA1_c35240 0.46 -2.2 3,695,586 - PGA1_c35240 0.48 -0.7 3,695,615 + PGA1_c35240 0.50 +1.7 3,695,617 + PGA1_c35240 0.51 +1.2 3,695,617 + PGA1_c35240 0.51 +1.6 3,695,617 + PGA1_c35240 0.51 +0.4 3,695,625 - PGA1_c35240 0.51 -1.7 3,695,691 - PGA1_c35240 0.56 -0.1 3,695,743 + PGA1_c35240 0.60 -0.1 3,695,750 + PGA1_c35240 0.61 -1.4 3,695,750 + PGA1_c35240 0.61 +1.5 3,695,750 + PGA1_c35240 0.61 -0.9 3,695,758 - PGA1_c35240 0.61 -0.2 3,695,758 - PGA1_c35240 0.61 +0.7 3,695,811 - PGA1_c35240 0.65 -0.5 3,695,896 + PGA1_c35240 0.72 +0.4 3,695,904 - PGA1_c35240 0.73 +0.9 3,695,916 + PGA1_c35240 0.73 -0.9 3,695,922 + PGA1_c35240 0.74 -0.9 3,695,947 + PGA1_c35240 0.76 -2.1 3,695,975 - PGA1_c35240 0.78 -1.9 3,696,027 + PGA1_c35240 0.82 -0.7 3,696,139 + -1.7 3,696,248 + -1.7 3,696,263 + -0.8 3,696,320 - +0.8 3,696,345 - +0.6 3,696,571 - PGA1_c35250 0.28 -0.1 3,696,585 - PGA1_c35250 0.29 -0.6 3,696,585 - PGA1_c35250 0.29 -1.6 3,696,598 + PGA1_c35250 0.30 -1.4 3,696,618 + PGA1_c35250 0.32 -1.5 3,696,619 - PGA1_c35250 0.32 -0.9 3,696,630 + PGA1_c35250 0.33 -0.5 3,696,635 + PGA1_c35250 0.34 +0.7 3,696,698 + PGA1_c35250 0.39 -1.4 3,696,704 + PGA1_c35250 0.40 -1.7 3,696,704 + PGA1_c35250 0.40 -0.9 3,696,704 + PGA1_c35250 0.40 -0.6 3,696,776 + PGA1_c35250 0.47 +0.1 3,696,817 - PGA1_c35250 0.51 -2.8 3,696,817 - PGA1_c35250 0.51 -2.4 3,696,900 - PGA1_c35250 0.58 -0.8 3,696,902 + PGA1_c35250 0.58 -0.0 3,696,910 - PGA1_c35250 0.59 -1.6 3,696,935 - PGA1_c35250 0.62 +0.8 3,697,017 - PGA1_c35250 0.69 -0.9 3,697,060 + PGA1_c35250 0.73 -1.7 3,697,068 - PGA1_c35250 0.74 -0.0 3,697,068 - PGA1_c35250 0.74 +0.4 3,697,068 - PGA1_c35250 0.74 -0.8 3,697,068 - PGA1_c35250 0.74 -2.6 3,697,068 - PGA1_c35250 0.74 -0.3 3,697,078 - PGA1_c35250 0.75 -0.4 3,697,101 + PGA1_c35250 0.77 -1.6 3,697,115 - PGA1_c35250 0.78 -1.3 3,697,115 - PGA1_c35250 0.78 -1.0 3,697,184 + PGA1_c35250 0.85 +0.5 3,697,191 + PGA1_c35250 0.85 -2.4 3,697,192 + PGA1_c35250 0.86 -2.8 3,697,192 + PGA1_c35250 0.86 -0.6 3,697,192 + PGA1_c35250 0.86 -1.2 3,697,192 + PGA1_c35250 0.86 +0.4 3,697,200 - PGA1_c35250 0.86 -1.0 3,697,200 - PGA1_c35250 0.86 +0.3 3,697,200 - PGA1_c35250 0.86 +0.2 3,697,200 - PGA1_c35250 0.86 -1.8 3,697,271 - -0.8 3,697,298 + -1.1 3,697,298 + +0.3 3,697,298 + -1.6 3,697,298 + -1.2 3,697,298 + -0.4 3,697,298 + -0.8 3,697,346 + +0.8 3,697,349 - -0.3 3,697,354 - +0.7 3,697,374 - +1.3 3,697,469 - PGA1_c35260 0.21 +0.2 3,697,588 + PGA1_c35260 0.43 -1.7 3,697,588 + PGA1_c35260 0.43 -0.1 3,697,716 - PGA1_c35260 0.65 -2.0 3,697,800 - PGA1_c35260 0.80 +0.2 3,697,819 + PGA1_c35260 0.84 -0.3 3,697,931 - -2.8 3,697,998 - -0.1 3,698,076 + +0.3 3,698,265 + +0.6 3,698,265 + -0.6 3,698,319 + PGA1_c35270 0.37 -0.1
Or see this region's nucleotide sequence