Strain Fitness in Marinobacter adhaerens HP15 around HP15_3336

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3335 and HP15_3336 are separated by 141 nucleotidesHP15_3336 and HP15_3337 are separated by 157 nucleotidesHP15_3337 and HP15_3338 are separated by 272 nucleotides HP15_3335: HP15_3335 - delta-aminolevulinic acid dehydratase, at 3,496,997 to 3,498,016 _3335 HP15_3336: HP15_3336 - lipase chaperone, at 3,498,158 to 3,499,180 _3336 HP15_3337: HP15_3337 - delta-aminolevulinic acid dehydratase, at 3,499,338 to 3,499,559 _3337 HP15_3338: HP15_3338 - transcriptional regulator, TetR family, at 3,499,832 to 3,500,464 _3338 Position (kb) 3498 3499 3500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3498.087 kb on - strandat 3498.216 kb on + strandat 3498.216 kb on + strandat 3498.224 kb on - strandat 3498.225 kb on - strandat 3498.294 kb on - strand, within HP15_3336at 3498.317 kb on + strand, within HP15_3336at 3498.320 kb on + strand, within HP15_3336at 3498.435 kb on - strand, within HP15_3336at 3498.455 kb on - strand, within HP15_3336at 3498.473 kb on - strand, within HP15_3336at 3498.630 kb on - strand, within HP15_3336at 3498.653 kb on - strand, within HP15_3336at 3498.671 kb on + strand, within HP15_3336at 3498.707 kb on + strand, within HP15_3336at 3498.759 kb on - strand, within HP15_3336at 3498.926 kb on - strand, within HP15_3336at 3498.976 kb on - strand, within HP15_3336at 3499.032 kb on + strand, within HP15_3336at 3499.112 kb on - strandat 3499.142 kb on - strandat 3499.277 kb on + strandat 3499.327 kb on + strandat 3499.404 kb on - strand, within HP15_3337at 3499.470 kb on - strand, within HP15_3337at 3499.512 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.529 kb on + strand, within HP15_3337at 3499.537 kb on - strandat 3499.537 kb on - strandat 3499.638 kb on - strandat 3499.899 kb on + strand, within HP15_3338at 3500.001 kb on + strand, within HP15_3338at 3500.007 kb on + strand, within HP15_3338at 3500.072 kb on + strand, within HP15_3338at 3500.080 kb on - strand, within HP15_3338at 3500.086 kb on - strand, within HP15_3338

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,498,087 - +0.8
3,498,216 + +0.0
3,498,216 + +0.9
3,498,224 - +0.2
3,498,225 - +0.1
3,498,294 - HP15_3336 0.13 -0.0
3,498,317 + HP15_3336 0.16 +0.8
3,498,320 + HP15_3336 0.16 +0.3
3,498,435 - HP15_3336 0.27 +1.2
3,498,455 - HP15_3336 0.29 +0.0
3,498,473 - HP15_3336 0.31 +0.2
3,498,630 - HP15_3336 0.46 -0.1
3,498,653 - HP15_3336 0.48 +0.1
3,498,671 + HP15_3336 0.50 +0.7
3,498,707 + HP15_3336 0.54 +0.7
3,498,759 - HP15_3336 0.59 +0.9
3,498,926 - HP15_3336 0.75 -2.2
3,498,976 - HP15_3336 0.80 -0.2
3,499,032 + HP15_3336 0.85 +1.3
3,499,112 - +0.2
3,499,142 - +1.1
3,499,277 + +0.6
3,499,327 + +1.1
3,499,404 - HP15_3337 0.30 -0.5
3,499,470 - HP15_3337 0.59 +0.1
3,499,512 + HP15_3337 0.78 +0.8
3,499,529 + HP15_3337 0.86 +0.6
3,499,529 + HP15_3337 0.86 +1.4
3,499,529 + HP15_3337 0.86 +1.9
3,499,537 - +0.9
3,499,537 - +2.3
3,499,638 - +0.3
3,499,899 + HP15_3338 0.11 -1.7
3,500,001 + HP15_3338 0.27 -1.7
3,500,007 + HP15_3338 0.28 -2.8
3,500,072 + HP15_3338 0.38 -1.7
3,500,080 - HP15_3338 0.39 -1.8
3,500,086 - HP15_3338 0.40 -1.9

Or see this region's nucleotide sequence