Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3063 and HP15_3064 are separated by 288 nucleotides HP15_3064 and HP15_3065 are separated by 78 nucleotides HP15_3065 and HP15_3066 overlap by 4 nucleotides HP15_3066 and HP15_3067 overlap by 1 nucleotides
HP15_3063: HP15_3063 - polynucleotide phosphorylase/polyadenylase, at 3,214,408 to 3,216,591
_3063
HP15_3064: HP15_3064 - ribosomal protein S15, bacterial-type, at 3,216,880 to 3,217,149
_3064
HP15_3065: HP15_3065 - tRNA pseudouridine synthase B, at 3,217,228 to 3,218,169
_3065
HP15_3066: HP15_3066 - ribosome-binding factor A, at 3,218,166 to 3,218,588
_3066
HP15_3067: HP15_3067 - translation initiation factor IF-2, at 3,218,588 to 3,221,137
_3067
Position (kb)
3217
3218
3219 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3216.854 kb on - strand at 3217.437 kb on - strand, within HP15_3065 at 3217.439 kb on + strand, within HP15_3065 at 3217.529 kb on + strand, within HP15_3065 at 3217.567 kb on - strand, within HP15_3065 at 3217.574 kb on + strand, within HP15_3065 at 3217.576 kb on + strand, within HP15_3065 at 3217.591 kb on + strand, within HP15_3065 at 3217.599 kb on - strand, within HP15_3065 at 3217.599 kb on - strand, within HP15_3065 at 3217.638 kb on - strand, within HP15_3065 at 3217.795 kb on - strand, within HP15_3065 at 3217.796 kb on + strand, within HP15_3065 at 3217.922 kb on + strand, within HP15_3065 at 3217.937 kb on + strand, within HP15_3065 at 3217.942 kb on + strand, within HP15_3065 at 3217.943 kb on + strand, within HP15_3065 at 3218.463 kb on + strand, within HP15_3066
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,216,854 - -1.7 3,217,437 - HP15_3065 0.22 -2.5 3,217,439 + HP15_3065 0.22 -0.5 3,217,529 + HP15_3065 0.32 -1.1 3,217,567 - HP15_3065 0.36 -1.2 3,217,574 + HP15_3065 0.37 +2.4 3,217,576 + HP15_3065 0.37 -0.9 3,217,591 + HP15_3065 0.39 -1.5 3,217,599 - HP15_3065 0.39 -1.3 3,217,599 - HP15_3065 0.39 -1.1 3,217,638 - HP15_3065 0.44 -0.1 3,217,795 - HP15_3065 0.60 -2.0 3,217,796 + HP15_3065 0.60 -1.7 3,217,922 + HP15_3065 0.74 -0.9 3,217,937 + HP15_3065 0.75 -0.6 3,217,942 + HP15_3065 0.76 -0.7 3,217,943 + HP15_3065 0.76 -0.8 3,218,463 + HP15_3066 0.70 -1.9
Or see this region's nucleotide sequence