Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3036 and HP15_3037 are separated by 151 nucleotides HP15_3037 and HP15_3038 are separated by 22 nucleotides HP15_3038 and HP15_3039 are separated by 14 nucleotides
HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145
_3036
HP15_3037: HP15_3037 - transcriptional regulator, TetR family protein, at 3,183,297 to 3,183,932
_3037
HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295
_3038
HP15_3039: HP15_3039 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 3,185,310 to 3,186,785
_3039
Position (kb)
3183
3184
3185
3186 Strain fitness (log2 ratio)
-1
0
1
2 at 3183.046 kb on - strand at 3183.362 kb on - strand, within HP15_3037 at 3183.413 kb on - strand, within HP15_3037 at 3183.695 kb on - strand, within HP15_3037 at 3183.803 kb on - strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.831 kb on - strand, within HP15_3037 at 3183.857 kb on + strand, within HP15_3037 at 3183.865 kb on - strand, within HP15_3037 at 3183.906 kb on - strand at 3184.014 kb on - strand at 3184.071 kb on - strand at 3184.114 kb on - strand, within HP15_3038 at 3184.131 kb on - strand, within HP15_3038 at 3184.179 kb on + strand, within HP15_3038 at 3184.283 kb on + strand, within HP15_3038 at 3184.286 kb on - strand, within HP15_3038 at 3184.340 kb on + strand, within HP15_3038 at 3184.368 kb on + strand, within HP15_3038 at 3184.376 kb on - strand, within HP15_3038 at 3184.508 kb on + strand, within HP15_3038 at 3184.568 kb on + strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.760 kb on + strand, within HP15_3038 at 3184.868 kb on - strand, within HP15_3038 at 3184.931 kb on - strand, within HP15_3038 at 3184.978 kb on - strand, within HP15_3038 at 3185.073 kb on - strand, within HP15_3038 at 3185.103 kb on + strand, within HP15_3038 at 3185.122 kb on + strand, within HP15_3038 at 3185.122 kb on + strand, within HP15_3038 at 3185.219 kb on + strand at 3185.219 kb on + strand at 3185.386 kb on + strand at 3185.518 kb on - strand, within HP15_3039 at 3185.542 kb on - strand, within HP15_3039 at 3185.659 kb on + strand, within HP15_3039 at 3185.761 kb on + strand, within HP15_3039 at 3185.761 kb on + strand, within HP15_3039 at 3185.943 kb on + strand, within HP15_3039 at 3186.099 kb on - strand, within HP15_3039 at 3186.101 kb on + strand, within HP15_3039 at 3186.161 kb on - strand, within HP15_3039 at 3186.278 kb on - strand, within HP15_3039 at 3186.283 kb on - strand, within HP15_3039
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,183,046 - +1.4 3,183,362 - HP15_3037 0.10 +0.8 3,183,413 - HP15_3037 0.18 +0.3 3,183,695 - HP15_3037 0.63 +1.1 3,183,803 - HP15_3037 0.80 +0.6 3,183,813 + HP15_3037 0.81 +0.2 3,183,813 + HP15_3037 0.81 +1.0 3,183,813 + HP15_3037 0.81 +0.9 3,183,831 - HP15_3037 0.84 +0.7 3,183,857 + HP15_3037 0.88 +0.7 3,183,865 - HP15_3037 0.89 +0.7 3,183,906 - +0.6 3,184,014 - +0.8 3,184,071 - +0.4 3,184,114 - HP15_3038 0.12 +1.5 3,184,131 - HP15_3038 0.13 +1.1 3,184,179 + HP15_3038 0.17 +2.3 3,184,283 + HP15_3038 0.24 +1.8 3,184,286 - HP15_3038 0.25 +1.4 3,184,340 + HP15_3038 0.29 +1.4 3,184,368 + HP15_3038 0.31 +0.3 3,184,376 - HP15_3038 0.31 -1.5 3,184,508 + HP15_3038 0.41 +1.4 3,184,568 + HP15_3038 0.46 +1.7 3,184,643 - HP15_3038 0.51 +1.4 3,184,643 - HP15_3038 0.51 +1.6 3,184,760 + HP15_3038 0.60 +1.6 3,184,868 - HP15_3038 0.68 +1.3 3,184,931 - HP15_3038 0.73 +1.9 3,184,978 - HP15_3038 0.76 +1.5 3,185,073 - HP15_3038 0.83 +0.2 3,185,103 + HP15_3038 0.86 +0.7 3,185,122 + HP15_3038 0.87 +0.1 3,185,122 + HP15_3038 0.87 +1.8 3,185,219 + +1.3 3,185,219 + +1.4 3,185,386 + +0.1 3,185,518 - HP15_3039 0.14 -1.7 3,185,542 - HP15_3039 0.16 +0.1 3,185,659 + HP15_3039 0.24 +0.2 3,185,761 + HP15_3039 0.31 -1.2 3,185,761 + HP15_3039 0.31 +0.2 3,185,943 + HP15_3039 0.43 +0.6 3,186,099 - HP15_3039 0.53 -1.7 3,186,101 + HP15_3039 0.54 +0.5 3,186,161 - HP15_3039 0.58 -0.9 3,186,278 - HP15_3039 0.66 -0.5 3,186,283 - HP15_3039 0.66 -1.4
Or see this region's nucleotide sequence