Strain Fitness in Marinobacter adhaerens HP15 around HP15_2998

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2997 and HP15_2998 overlap by 1 nucleotidesHP15_2998 and HP15_2999 overlap by 11 nucleotidesHP15_2999 and HP15_3000 are separated by 77 nucleotides HP15_2997: HP15_2997 - hemin ABC transporter, ATP-binding protein HutD, at 3,140,981 to 3,141,802 _2997 HP15_2998: HP15_2998 - hemin ABC transporter, permease protein, at 3,141,802 to 3,142,839 _2998 HP15_2999: HP15_2999 - hemin ABC transporter, periplasmic hemin-binding protein, at 3,142,829 to 3,143,602 _2999 HP15_3000: HP15_3000 - hemin degrading factor, at 3,143,680 to 3,144,753 _3000 Position (kb) 3141 3142 3143Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3140.947 kb on + strandat 3141.024 kb on + strandat 3141.042 kb on - strandat 3141.054 kb on + strandat 3141.055 kb on + strandat 3141.099 kb on - strand, within HP15_2997at 3141.116 kb on - strand, within HP15_2997at 3141.116 kb on - strand, within HP15_2997at 3141.126 kb on - strand, within HP15_2997at 3141.208 kb on + strand, within HP15_2997at 3141.208 kb on + strand, within HP15_2997at 3141.340 kb on + strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.399 kb on + strand, within HP15_2997at 3141.399 kb on + strand, within HP15_2997at 3141.407 kb on - strand, within HP15_2997at 3141.483 kb on - strand, within HP15_2997at 3141.495 kb on + strand, within HP15_2997at 3141.568 kb on - strand, within HP15_2997at 3141.663 kb on + strand, within HP15_2997at 3141.690 kb on + strand, within HP15_2997at 3141.736 kb on + strandat 3141.756 kb on - strandat 3141.853 kb on - strandat 3141.924 kb on + strand, within HP15_2998at 3142.025 kb on - strand, within HP15_2998at 3142.218 kb on + strand, within HP15_2998at 3142.278 kb on - strand, within HP15_2998at 3142.394 kb on + strand, within HP15_2998at 3142.449 kb on - strand, within HP15_2998at 3142.556 kb on - strand, within HP15_2998at 3142.559 kb on + strand, within HP15_2998at 3142.566 kb on - strand, within HP15_2998at 3142.803 kb on + strandat 3142.811 kb on - strandat 3142.872 kb on - strandat 3142.898 kb on - strandat 3143.003 kb on - strand, within HP15_2999at 3143.100 kb on + strand, within HP15_2999at 3143.265 kb on - strand, within HP15_2999at 3143.318 kb on - strand, within HP15_2999at 3143.321 kb on + strand, within HP15_2999at 3143.517 kb on - strand, within HP15_2999at 3143.552 kb on + strandat 3143.606 kb on - strandat 3143.665 kb on + strandat 3143.671 kb on + strandat 3143.791 kb on - strand, within HP15_3000at 3143.828 kb on + strand, within HP15_3000at 3143.832 kb on + strand, within HP15_3000

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,140,947 + -0.8
3,141,024 + -1.0
3,141,042 - -0.1
3,141,054 + +0.5
3,141,055 + +0.4
3,141,099 - HP15_2997 0.14 -1.5
3,141,116 - HP15_2997 0.16 -0.2
3,141,116 - HP15_2997 0.16 -0.7
3,141,126 - HP15_2997 0.18 +0.7
3,141,208 + HP15_2997 0.28 -0.1
3,141,208 + HP15_2997 0.28 +0.3
3,141,340 + HP15_2997 0.44 +0.3
3,141,348 - HP15_2997 0.45 +0.6
3,141,348 - HP15_2997 0.45 -1.1
3,141,348 - HP15_2997 0.45 +0.6
3,141,399 + HP15_2997 0.51 -0.1
3,141,399 + HP15_2997 0.51 -0.0
3,141,407 - HP15_2997 0.52 -0.3
3,141,483 - HP15_2997 0.61 -0.9
3,141,495 + HP15_2997 0.63 -0.3
3,141,568 - HP15_2997 0.71 -0.1
3,141,663 + HP15_2997 0.83 -3.5
3,141,690 + HP15_2997 0.86 +0.4
3,141,736 + -0.1
3,141,756 - -0.5
3,141,853 - -0.3
3,141,924 + HP15_2998 0.12 +0.1
3,142,025 - HP15_2998 0.21 -1.8
3,142,218 + HP15_2998 0.40 +0.1
3,142,278 - HP15_2998 0.46 -1.4
3,142,394 + HP15_2998 0.57 -1.3
3,142,449 - HP15_2998 0.62 +0.6
3,142,556 - HP15_2998 0.73 -0.0
3,142,559 + HP15_2998 0.73 +0.1
3,142,566 - HP15_2998 0.74 -0.2
3,142,803 + -0.1
3,142,811 - -0.8
3,142,872 - -0.1
3,142,898 - -1.4
3,143,003 - HP15_2999 0.22 +2.3
3,143,100 + HP15_2999 0.35 +0.7
3,143,265 - HP15_2999 0.56 +0.2
3,143,318 - HP15_2999 0.63 -1.5
3,143,321 + HP15_2999 0.64 -0.0
3,143,517 - HP15_2999 0.89 +0.7
3,143,552 + +0.0
3,143,606 - -0.6
3,143,665 + +1.7
3,143,671 + +0.3
3,143,791 - HP15_3000 0.10 +0.1
3,143,828 + HP15_3000 0.14 +0.4
3,143,832 + HP15_3000 0.14 -0.9

Or see this region's nucleotide sequence