Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2997 and HP15_2998 overlap by 1 nucleotides HP15_2998 and HP15_2999 overlap by 11 nucleotides HP15_2999 and HP15_3000 are separated by 77 nucleotides
HP15_2997: HP15_2997 - hemin ABC transporter, ATP-binding protein HutD, at 3,140,981 to 3,141,802
_2997
HP15_2998: HP15_2998 - hemin ABC transporter, permease protein, at 3,141,802 to 3,142,839
_2998
HP15_2999: HP15_2999 - hemin ABC transporter, periplasmic hemin-binding protein, at 3,142,829 to 3,143,602
_2999
HP15_3000: HP15_3000 - hemin degrading factor, at 3,143,680 to 3,144,753
_3000
Position (kb)
3141
3142
3143 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3140.947 kb on + strand at 3141.024 kb on + strand at 3141.042 kb on - strand at 3141.054 kb on + strand at 3141.055 kb on + strand at 3141.099 kb on - strand, within HP15_2997 at 3141.116 kb on - strand, within HP15_2997 at 3141.116 kb on - strand, within HP15_2997 at 3141.126 kb on - strand, within HP15_2997 at 3141.208 kb on + strand, within HP15_2997 at 3141.208 kb on + strand, within HP15_2997 at 3141.340 kb on + strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.399 kb on + strand, within HP15_2997 at 3141.399 kb on + strand, within HP15_2997 at 3141.407 kb on - strand, within HP15_2997 at 3141.483 kb on - strand, within HP15_2997 at 3141.495 kb on + strand, within HP15_2997 at 3141.568 kb on - strand, within HP15_2997 at 3141.663 kb on + strand, within HP15_2997 at 3141.690 kb on + strand, within HP15_2997 at 3141.736 kb on + strand at 3141.756 kb on - strand at 3141.853 kb on - strand at 3141.924 kb on + strand, within HP15_2998 at 3142.025 kb on - strand, within HP15_2998 at 3142.218 kb on + strand, within HP15_2998 at 3142.278 kb on - strand, within HP15_2998 at 3142.394 kb on + strand, within HP15_2998 at 3142.449 kb on - strand, within HP15_2998 at 3142.556 kb on - strand, within HP15_2998 at 3142.559 kb on + strand, within HP15_2998 at 3142.566 kb on - strand, within HP15_2998 at 3142.803 kb on + strand at 3142.811 kb on - strand at 3142.872 kb on - strand at 3142.898 kb on - strand at 3143.003 kb on - strand, within HP15_2999 at 3143.100 kb on + strand, within HP15_2999 at 3143.265 kb on - strand, within HP15_2999 at 3143.318 kb on - strand, within HP15_2999 at 3143.321 kb on + strand, within HP15_2999 at 3143.517 kb on - strand, within HP15_2999 at 3143.552 kb on + strand at 3143.606 kb on - strand at 3143.665 kb on + strand at 3143.671 kb on + strand at 3143.791 kb on - strand, within HP15_3000 at 3143.828 kb on + strand, within HP15_3000 at 3143.832 kb on + strand, within HP15_3000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,140,947 + -0.8 3,141,024 + -1.0 3,141,042 - -0.1 3,141,054 + +0.5 3,141,055 + +0.4 3,141,099 - HP15_2997 0.14 -1.5 3,141,116 - HP15_2997 0.16 -0.2 3,141,116 - HP15_2997 0.16 -0.7 3,141,126 - HP15_2997 0.18 +0.7 3,141,208 + HP15_2997 0.28 -0.1 3,141,208 + HP15_2997 0.28 +0.3 3,141,340 + HP15_2997 0.44 +0.3 3,141,348 - HP15_2997 0.45 +0.6 3,141,348 - HP15_2997 0.45 -1.1 3,141,348 - HP15_2997 0.45 +0.6 3,141,399 + HP15_2997 0.51 -0.1 3,141,399 + HP15_2997 0.51 -0.0 3,141,407 - HP15_2997 0.52 -0.3 3,141,483 - HP15_2997 0.61 -0.9 3,141,495 + HP15_2997 0.63 -0.3 3,141,568 - HP15_2997 0.71 -0.1 3,141,663 + HP15_2997 0.83 -3.5 3,141,690 + HP15_2997 0.86 +0.4 3,141,736 + -0.1 3,141,756 - -0.5 3,141,853 - -0.3 3,141,924 + HP15_2998 0.12 +0.1 3,142,025 - HP15_2998 0.21 -1.8 3,142,218 + HP15_2998 0.40 +0.1 3,142,278 - HP15_2998 0.46 -1.4 3,142,394 + HP15_2998 0.57 -1.3 3,142,449 - HP15_2998 0.62 +0.6 3,142,556 - HP15_2998 0.73 -0.0 3,142,559 + HP15_2998 0.73 +0.1 3,142,566 - HP15_2998 0.74 -0.2 3,142,803 + -0.1 3,142,811 - -0.8 3,142,872 - -0.1 3,142,898 - -1.4 3,143,003 - HP15_2999 0.22 +2.3 3,143,100 + HP15_2999 0.35 +0.7 3,143,265 - HP15_2999 0.56 +0.2 3,143,318 - HP15_2999 0.63 -1.5 3,143,321 + HP15_2999 0.64 -0.0 3,143,517 - HP15_2999 0.89 +0.7 3,143,552 + +0.0 3,143,606 - -0.6 3,143,665 + +1.7 3,143,671 + +0.3 3,143,791 - HP15_3000 0.10 +0.1 3,143,828 + HP15_3000 0.14 +0.4 3,143,832 + HP15_3000 0.14 -0.9
Or see this region's nucleotide sequence