Strain Fitness in Marinobacter adhaerens HP15 around HP15_2954

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2953 and HP15_2954 are separated by 177 nucleotidesHP15_2954 and HP15_2955 are separated by 15 nucleotides HP15_2953: HP15_2953 - oxygen-independent coproporphyrinogen III oxidase, at 3,095,446 to 3,096,864 _2953 HP15_2954: HP15_2954 - deoxyribodipyrimidine photolyase-related protein, at 3,097,042 to 3,098,631 _2954 HP15_2955: HP15_2955 - ATP-binding component of ABC transporter, at 3,098,647 to 3,099,765 _2955 Position (kb) 3097 3098 3099Strain fitness (log2 ratio) -2 -1 0 1 2at 3096.047 kb on + strand, within HP15_2953at 3096.094 kb on + strand, within HP15_2953at 3096.147 kb on + strand, within HP15_2953at 3096.251 kb on + strand, within HP15_2953at 3096.314 kb on - strand, within HP15_2953at 3096.314 kb on - strand, within HP15_2953at 3096.345 kb on - strand, within HP15_2953at 3096.359 kb on - strand, within HP15_2953at 3096.383 kb on - strand, within HP15_2953at 3096.389 kb on + strand, within HP15_2953at 3096.395 kb on - strand, within HP15_2953at 3096.397 kb on - strand, within HP15_2953at 3096.397 kb on - strand, within HP15_2953at 3096.429 kb on - strand, within HP15_2953at 3096.491 kb on + strand, within HP15_2953at 3096.634 kb on - strand, within HP15_2953at 3096.634 kb on - strand, within HP15_2953at 3096.636 kb on - strand, within HP15_2953at 3096.651 kb on + strand, within HP15_2953at 3096.712 kb on + strand, within HP15_2953at 3096.758 kb on + strandat 3096.793 kb on + strandat 3096.796 kb on - strandat 3096.840 kb on - strandat 3096.840 kb on - strandat 3096.853 kb on + strandat 3096.911 kb on - strandat 3097.022 kb on + strandat 3097.022 kb on + strandat 3097.022 kb on + strandat 3097.053 kb on - strandat 3097.060 kb on + strandat 3097.171 kb on + strandat 3097.171 kb on + strandat 3097.259 kb on - strand, within HP15_2954at 3097.259 kb on - strand, within HP15_2954at 3097.316 kb on - strand, within HP15_2954at 3097.344 kb on - strand, within HP15_2954at 3097.344 kb on - strand, within HP15_2954at 3097.367 kb on + strand, within HP15_2954at 3097.415 kb on - strand, within HP15_2954at 3097.434 kb on + strand, within HP15_2954at 3097.442 kb on - strand, within HP15_2954at 3097.532 kb on + strand, within HP15_2954at 3097.611 kb on + strand, within HP15_2954at 3097.619 kb on - strand, within HP15_2954at 3097.621 kb on + strand, within HP15_2954at 3097.685 kb on - strand, within HP15_2954at 3097.686 kb on + strand, within HP15_2954at 3097.720 kb on - strand, within HP15_2954at 3097.728 kb on - strand, within HP15_2954at 3097.738 kb on - strand, within HP15_2954at 3097.829 kb on + strand, within HP15_2954at 3097.842 kb on - strand, within HP15_2954at 3097.842 kb on - strand, within HP15_2954at 3097.842 kb on - strand, within HP15_2954at 3097.847 kb on - strand, within HP15_2954at 3097.997 kb on - strand, within HP15_2954at 3098.028 kb on - strand, within HP15_2954at 3098.029 kb on - strand, within HP15_2954at 3098.120 kb on - strand, within HP15_2954at 3098.184 kb on + strand, within HP15_2954at 3098.192 kb on - strand, within HP15_2954at 3098.205 kb on - strand, within HP15_2954at 3098.293 kb on + strand, within HP15_2954at 3098.293 kb on + strand, within HP15_2954at 3098.305 kb on - strand, within HP15_2954at 3098.360 kb on + strand, within HP15_2954at 3098.387 kb on + strand, within HP15_2954at 3098.395 kb on - strand, within HP15_2954at 3098.478 kb on + strandat 3098.586 kb on + strandat 3098.810 kb on - strand, within HP15_2955at 3098.856 kb on + strand, within HP15_2955at 3099.016 kb on - strand, within HP15_2955at 3099.041 kb on - strand, within HP15_2955at 3099.053 kb on - strand, within HP15_2955at 3099.110 kb on - strand, within HP15_2955at 3099.118 kb on - strand, within HP15_2955at 3099.188 kb on - strand, within HP15_2955at 3099.327 kb on - strand, within HP15_2955at 3099.333 kb on - strand, within HP15_2955at 3099.358 kb on - strand, within HP15_2955at 3099.471 kb on - strand, within HP15_2955at 3099.540 kb on - strand, within HP15_2955at 3099.565 kb on - strand, within HP15_2955at 3099.571 kb on + strand, within HP15_2955at 3099.617 kb on + strand, within HP15_2955at 3099.619 kb on + strand, within HP15_2955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,096,047 + HP15_2953 0.42 +1.2
3,096,094 + HP15_2953 0.46 +0.3
3,096,147 + HP15_2953 0.49 -0.3
3,096,251 + HP15_2953 0.57 +0.2
3,096,314 - HP15_2953 0.61 +0.7
3,096,314 - HP15_2953 0.61 +0.2
3,096,345 - HP15_2953 0.63 +0.6
3,096,359 - HP15_2953 0.64 -0.4
3,096,383 - HP15_2953 0.66 -0.1
3,096,389 + HP15_2953 0.66 +0.1
3,096,395 - HP15_2953 0.67 -0.6
3,096,397 - HP15_2953 0.67 +0.2
3,096,397 - HP15_2953 0.67 -0.8
3,096,429 - HP15_2953 0.69 +0.5
3,096,491 + HP15_2953 0.74 -0.8
3,096,634 - HP15_2953 0.84 +0.6
3,096,634 - HP15_2953 0.84 +1.8
3,096,636 - HP15_2953 0.84 +0.6
3,096,651 + HP15_2953 0.85 +0.9
3,096,712 + HP15_2953 0.89 -0.8
3,096,758 + -0.8
3,096,793 + +0.2
3,096,796 - +0.6
3,096,840 - +0.9
3,096,840 - -0.3
3,096,853 + +0.4
3,096,911 - -0.1
3,097,022 + +0.0
3,097,022 + -0.9
3,097,022 + +0.3
3,097,053 - +0.7
3,097,060 + +0.1
3,097,171 + +0.4
3,097,171 + +0.6
3,097,259 - HP15_2954 0.14 -0.8
3,097,259 - HP15_2954 0.14 -2.1
3,097,316 - HP15_2954 0.17 -1.1
3,097,344 - HP15_2954 0.19 +1.0
3,097,344 - HP15_2954 0.19 -2.5
3,097,367 + HP15_2954 0.20 +0.6
3,097,415 - HP15_2954 0.23 +0.9
3,097,434 + HP15_2954 0.25 +0.3
3,097,442 - HP15_2954 0.25 +0.2
3,097,532 + HP15_2954 0.31 -0.1
3,097,611 + HP15_2954 0.36 -0.5
3,097,619 - HP15_2954 0.36 -0.1
3,097,621 + HP15_2954 0.36 +0.2
3,097,685 - HP15_2954 0.40 -0.3
3,097,686 + HP15_2954 0.41 -0.6
3,097,720 - HP15_2954 0.43 +0.0
3,097,728 - HP15_2954 0.43 -0.4
3,097,738 - HP15_2954 0.44 -0.3
3,097,829 + HP15_2954 0.49 -0.7
3,097,842 - HP15_2954 0.50 +0.4
3,097,842 - HP15_2954 0.50 -0.7
3,097,842 - HP15_2954 0.50 +0.9
3,097,847 - HP15_2954 0.51 -0.4
3,097,997 - HP15_2954 0.60 +0.3
3,098,028 - HP15_2954 0.62 -0.8
3,098,029 - HP15_2954 0.62 +0.4
3,098,120 - HP15_2954 0.68 +1.3
3,098,184 + HP15_2954 0.72 -0.8
3,098,192 - HP15_2954 0.72 -0.3
3,098,205 - HP15_2954 0.73 +1.4
3,098,293 + HP15_2954 0.79 +0.1
3,098,293 + HP15_2954 0.79 -0.8
3,098,305 - HP15_2954 0.79 -0.6
3,098,360 + HP15_2954 0.83 -0.1
3,098,387 + HP15_2954 0.85 -0.2
3,098,395 - HP15_2954 0.85 +0.3
3,098,478 + +0.4
3,098,586 + -0.2
3,098,810 - HP15_2955 0.15 -0.2
3,098,856 + HP15_2955 0.19 +0.0
3,099,016 - HP15_2955 0.33 +0.9
3,099,041 - HP15_2955 0.35 +0.2
3,099,053 - HP15_2955 0.36 +0.3
3,099,110 - HP15_2955 0.41 +0.3
3,099,118 - HP15_2955 0.42 -0.2
3,099,188 - HP15_2955 0.48 +0.9
3,099,327 - HP15_2955 0.61 -0.8
3,099,333 - HP15_2955 0.61 +0.1
3,099,358 - HP15_2955 0.64 +0.5
3,099,471 - HP15_2955 0.74 +0.7
3,099,540 - HP15_2955 0.80 +1.3
3,099,565 - HP15_2955 0.82 +1.2
3,099,571 + HP15_2955 0.83 +0.8
3,099,617 + HP15_2955 0.87 -1.0
3,099,619 + HP15_2955 0.87 +0.2

Or see this region's nucleotide sequence