Strain Fitness in Marinobacter adhaerens HP15 around HP15_2890

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2888 and HP15_2889 overlap by 4 nucleotidesHP15_2889 and HP15_2890 are separated by 6 nucleotidesHP15_2890 and HP15_2891 are separated by 127 nucleotidesHP15_2891 and HP15_2892 are separated by 35 nucleotides HP15_2888: HP15_2888 - protein containing DUF162, at 3,024,701 to 3,025,354 _2888 HP15_2889: HP15_2889 - membrane protein containing DUF6, transmembrane, at 3,025,351 to 3,026,304 _2889 HP15_2890: HP15_2890 - lactoylglutathione lyase, at 3,026,311 to 3,026,859 _2890 HP15_2891: HP15_2891 - hypothetical protein, at 3,026,987 to 3,027,118 _2891 HP15_2892: HP15_2892 - alkane 1-monooxygenase, at 3,027,154 to 3,028,239 _2892 Position (kb) 3026 3027Strain fitness (log2 ratio) -2 -1 0 1at 3025.389 kb on + strandat 3025.396 kb on - strandat 3025.397 kb on - strandat 3025.433 kb on + strandat 3025.456 kb on - strand, within HP15_2889at 3025.607 kb on + strand, within HP15_2889at 3025.617 kb on + strand, within HP15_2889at 3025.625 kb on - strand, within HP15_2889at 3026.004 kb on + strand, within HP15_2889at 3026.127 kb on + strand, within HP15_2889at 3026.127 kb on + strand, within HP15_2889at 3026.157 kb on + strand, within HP15_2889at 3026.175 kb on - strand, within HP15_2889at 3026.234 kb on - strandat 3026.307 kb on - strandat 3026.318 kb on + strandat 3026.473 kb on + strand, within HP15_2890at 3026.473 kb on + strand, within HP15_2890at 3026.486 kb on + strand, within HP15_2890at 3026.511 kb on - strand, within HP15_2890at 3026.599 kb on + strand, within HP15_2890at 3026.599 kb on + strand, within HP15_2890at 3026.607 kb on - strand, within HP15_2890at 3026.607 kb on - strand, within HP15_2890at 3026.607 kb on - strand, within HP15_2890at 3026.607 kb on - strand, within HP15_2890at 3026.743 kb on + strand, within HP15_2890at 3026.886 kb on + strandat 3026.893 kb on + strandat 3026.893 kb on + strandat 3026.893 kb on + strandat 3026.977 kb on - strandat 3027.135 kb on + strandat 3027.135 kb on + strandat 3027.166 kb on + strandat 3027.276 kb on + strand, within HP15_2892at 3027.284 kb on + strand, within HP15_2892at 3027.330 kb on - strand, within HP15_2892at 3027.396 kb on + strand, within HP15_2892at 3027.404 kb on - strand, within HP15_2892at 3027.455 kb on - strand, within HP15_2892at 3027.492 kb on - strand, within HP15_2892at 3027.621 kb on - strand, within HP15_2892at 3027.694 kb on + strand, within HP15_2892at 3027.738 kb on + strand, within HP15_2892at 3027.748 kb on - strand, within HP15_2892at 3027.771 kb on - strand, within HP15_2892

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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3,025,389 + +0.0
3,025,396 - +0.9
3,025,397 - +0.1
3,025,433 + -0.7
3,025,456 - HP15_2889 0.11 +0.5
3,025,607 + HP15_2889 0.27 +1.0
3,025,617 + HP15_2889 0.28 -0.7
3,025,625 - HP15_2889 0.29 +0.5
3,026,004 + HP15_2889 0.68 -0.1
3,026,127 + HP15_2889 0.81 -1.0
3,026,127 + HP15_2889 0.81 -1.0
3,026,157 + HP15_2889 0.84 +1.2
3,026,175 - HP15_2889 0.86 -0.3
3,026,234 - -0.0
3,026,307 - +0.6
3,026,318 + -0.3
3,026,473 + HP15_2890 0.30 +0.6
3,026,473 + HP15_2890 0.30 +0.9
3,026,486 + HP15_2890 0.32 -0.9
3,026,511 - HP15_2890 0.36 -0.3
3,026,599 + HP15_2890 0.52 +0.3
3,026,599 + HP15_2890 0.52 +0.0
3,026,607 - HP15_2890 0.54 -0.6
3,026,607 - HP15_2890 0.54 +0.2
3,026,607 - HP15_2890 0.54 -2.4
3,026,607 - HP15_2890 0.54 +0.1
3,026,743 + HP15_2890 0.79 +0.3
3,026,886 + -0.4
3,026,893 + +0.2
3,026,893 + +0.1
3,026,893 + -0.4
3,026,977 - -2.7
3,027,135 + -1.1
3,027,135 + -0.6
3,027,166 + +0.4
3,027,276 + HP15_2892 0.11 +0.2
3,027,284 + HP15_2892 0.12 -2.2
3,027,330 - HP15_2892 0.16 +0.2
3,027,396 + HP15_2892 0.22 +0.7
3,027,404 - HP15_2892 0.23 +0.7
3,027,455 - HP15_2892 0.28 -0.2
3,027,492 - HP15_2892 0.31 +0.0
3,027,621 - HP15_2892 0.43 -1.0
3,027,694 + HP15_2892 0.50 -0.4
3,027,738 + HP15_2892 0.54 +0.4
3,027,748 - HP15_2892 0.55 -0.6
3,027,771 - HP15_2892 0.57 +1.2

Or see this region's nucleotide sequence