Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2888 and HP15_2889 overlap by 4 nucleotides HP15_2889 and HP15_2890 are separated by 6 nucleotides HP15_2890 and HP15_2891 are separated by 127 nucleotides HP15_2891 and HP15_2892 are separated by 35 nucleotides
HP15_2888: HP15_2888 - protein containing DUF162, at 3,024,701 to 3,025,354
_2888
HP15_2889: HP15_2889 - membrane protein containing DUF6, transmembrane, at 3,025,351 to 3,026,304
_2889
HP15_2890: HP15_2890 - lactoylglutathione lyase, at 3,026,311 to 3,026,859
_2890
HP15_2891: HP15_2891 - hypothetical protein, at 3,026,987 to 3,027,118
_2891
HP15_2892: HP15_2892 - alkane 1-monooxygenase, at 3,027,154 to 3,028,239
_2892
Position (kb)
3026
3027 Strain fitness (log2 ratio)
-2
-1
0
1 at 3025.389 kb on + strand at 3025.396 kb on - strand at 3025.397 kb on - strand at 3025.433 kb on + strand at 3025.456 kb on - strand, within HP15_2889 at 3025.607 kb on + strand, within HP15_2889 at 3025.617 kb on + strand, within HP15_2889 at 3025.625 kb on - strand, within HP15_2889 at 3026.004 kb on + strand, within HP15_2889 at 3026.127 kb on + strand, within HP15_2889 at 3026.127 kb on + strand, within HP15_2889 at 3026.157 kb on + strand, within HP15_2889 at 3026.175 kb on - strand, within HP15_2889 at 3026.234 kb on - strand at 3026.307 kb on - strand at 3026.318 kb on + strand at 3026.473 kb on + strand, within HP15_2890 at 3026.473 kb on + strand, within HP15_2890 at 3026.486 kb on + strand, within HP15_2890 at 3026.511 kb on - strand, within HP15_2890 at 3026.599 kb on + strand, within HP15_2890 at 3026.599 kb on + strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.607 kb on - strand, within HP15_2890 at 3026.743 kb on + strand, within HP15_2890 at 3026.886 kb on + strand at 3026.893 kb on + strand at 3026.893 kb on + strand at 3026.893 kb on + strand at 3026.977 kb on - strand at 3027.135 kb on + strand at 3027.135 kb on + strand at 3027.166 kb on + strand at 3027.276 kb on + strand, within HP15_2892 at 3027.284 kb on + strand, within HP15_2892 at 3027.330 kb on - strand, within HP15_2892 at 3027.396 kb on + strand, within HP15_2892 at 3027.404 kb on - strand, within HP15_2892 at 3027.455 kb on - strand, within HP15_2892 at 3027.492 kb on - strand, within HP15_2892 at 3027.621 kb on - strand, within HP15_2892 at 3027.694 kb on + strand, within HP15_2892 at 3027.738 kb on + strand, within HP15_2892 at 3027.748 kb on - strand, within HP15_2892 at 3027.771 kb on - strand, within HP15_2892
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 3,025,389 + +0.0 3,025,396 - +0.9 3,025,397 - +0.1 3,025,433 + -0.7 3,025,456 - HP15_2889 0.11 +0.5 3,025,607 + HP15_2889 0.27 +1.0 3,025,617 + HP15_2889 0.28 -0.7 3,025,625 - HP15_2889 0.29 +0.5 3,026,004 + HP15_2889 0.68 -0.1 3,026,127 + HP15_2889 0.81 -1.0 3,026,127 + HP15_2889 0.81 -1.0 3,026,157 + HP15_2889 0.84 +1.2 3,026,175 - HP15_2889 0.86 -0.3 3,026,234 - -0.0 3,026,307 - +0.6 3,026,318 + -0.3 3,026,473 + HP15_2890 0.30 +0.6 3,026,473 + HP15_2890 0.30 +0.9 3,026,486 + HP15_2890 0.32 -0.9 3,026,511 - HP15_2890 0.36 -0.3 3,026,599 + HP15_2890 0.52 +0.3 3,026,599 + HP15_2890 0.52 +0.0 3,026,607 - HP15_2890 0.54 -0.6 3,026,607 - HP15_2890 0.54 +0.2 3,026,607 - HP15_2890 0.54 -2.4 3,026,607 - HP15_2890 0.54 +0.1 3,026,743 + HP15_2890 0.79 +0.3 3,026,886 + -0.4 3,026,893 + +0.2 3,026,893 + +0.1 3,026,893 + -0.4 3,026,977 - -2.7 3,027,135 + -1.1 3,027,135 + -0.6 3,027,166 + +0.4 3,027,276 + HP15_2892 0.11 +0.2 3,027,284 + HP15_2892 0.12 -2.2 3,027,330 - HP15_2892 0.16 +0.2 3,027,396 + HP15_2892 0.22 +0.7 3,027,404 - HP15_2892 0.23 +0.7 3,027,455 - HP15_2892 0.28 -0.2 3,027,492 - HP15_2892 0.31 +0.0 3,027,621 - HP15_2892 0.43 -1.0 3,027,694 + HP15_2892 0.50 -0.4 3,027,738 + HP15_2892 0.54 +0.4 3,027,748 - HP15_2892 0.55 -0.6 3,027,771 - HP15_2892 0.57 +1.2
Or see this region's nucleotide sequence