Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2655 and HP15_2656 are separated by 28 nucleotides HP15_2656 and HP15_2657 are separated by 90 nucleotides HP15_2657 and HP15_2658 are separated by 5 nucleotides
HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495
_2655
HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194
_2656
HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905
_2657
HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582
_2658
Position (kb)
2805
2806
2807
2808 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2804.775 kb on + strand, within HP15_2655 at 2804.911 kb on - strand, within HP15_2655 at 2804.974 kb on + strand, within HP15_2655 at 2804.993 kb on + strand, within HP15_2655 at 2805.017 kb on + strand, within HP15_2655 at 2805.017 kb on + strand, within HP15_2655 at 2805.052 kb on + strand, within HP15_2655 at 2805.160 kb on + strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.299 kb on - strand, within HP15_2655 at 2805.446 kb on - strand at 2805.672 kb on + strand at 2805.753 kb on + strand, within HP15_2656 at 2805.847 kb on + strand, within HP15_2656 at 2805.861 kb on - strand, within HP15_2656 at 2805.985 kb on - strand, within HP15_2656 at 2806.128 kb on + strand, within HP15_2656 at 2806.208 kb on - strand, within HP15_2656 at 2806.507 kb on + strand, within HP15_2656 at 2806.594 kb on - strand, within HP15_2656 at 2806.615 kb on + strand, within HP15_2656 at 2806.677 kb on + strand, within HP15_2656 at 2806.677 kb on + strand, within HP15_2656 at 2806.677 kb on + strand, within HP15_2656 at 2806.678 kb on - strand, within HP15_2656 at 2806.685 kb on - strand, within HP15_2656 at 2807.041 kb on + strand at 2807.144 kb on + strand at 2807.144 kb on + strand at 2807.280 kb on - strand at 2808.016 kb on - strand, within HP15_2658 at 2808.102 kb on + strand, within HP15_2658 at 2808.108 kb on - strand, within HP15_2658 at 2808.139 kb on - strand, within HP15_2658 at 2808.144 kb on - strand, within HP15_2658 at 2808.170 kb on - strand, within HP15_2658
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,804,775 + HP15_2655 0.52 +1.0 2,804,911 - HP15_2655 0.61 -0.7 2,804,974 + HP15_2655 0.65 +0.1 2,804,993 + HP15_2655 0.67 +0.6 2,805,017 + HP15_2655 0.68 -0.5 2,805,017 + HP15_2655 0.68 -0.3 2,805,052 + HP15_2655 0.71 -1.4 2,805,160 + HP15_2655 0.78 +0.6 2,805,168 - HP15_2655 0.78 +0.3 2,805,168 - HP15_2655 0.78 -1.0 2,805,168 - HP15_2655 0.78 -1.1 2,805,168 - HP15_2655 0.78 -0.9 2,805,168 - HP15_2655 0.78 +0.1 2,805,299 - HP15_2655 0.87 +0.3 2,805,446 - -0.4 2,805,672 + -0.4 2,805,753 + HP15_2656 0.14 +2.1 2,805,847 + HP15_2656 0.19 +0.5 2,805,861 - HP15_2656 0.20 +0.1 2,805,985 - HP15_2656 0.28 +0.2 2,806,128 + HP15_2656 0.36 -0.5 2,806,208 - HP15_2656 0.41 +0.4 2,806,507 + HP15_2656 0.59 -0.8 2,806,594 - HP15_2656 0.64 -0.6 2,806,615 + HP15_2656 0.65 +0.1 2,806,677 + HP15_2656 0.69 -0.7 2,806,677 + HP15_2656 0.69 +0.4 2,806,677 + HP15_2656 0.69 -1.4 2,806,678 - HP15_2656 0.69 +0.7 2,806,685 - HP15_2656 0.69 +1.3 2,807,041 + -0.7 2,807,144 + -1.8 2,807,144 + +2.4 2,807,280 - -0.5 2,808,016 - HP15_2658 0.16 -1.0 2,808,102 + HP15_2658 0.28 -0.3 2,808,108 - HP15_2658 0.29 +0.2 2,808,139 - HP15_2658 0.34 +0.2 2,808,144 - HP15_2658 0.35 -0.5 2,808,170 - HP15_2658 0.39 -0.4
Or see this region's nucleotide sequence