Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2546 and HP15_2547 are separated by 202 nucleotides HP15_2547 and HP15_2548 are separated by 151 nucleotides HP15_2548 and HP15_2549 are separated by 30 nucleotides HP15_2549 and HP15_2550 are separated by 23 nucleotides
HP15_2546: HP15_2546 - BLUF domain protein, at 2,692,973 to 2,693,530
_2546
HP15_2547: HP15_2547 - membrane protein containing uncharacterized protein family UPF0126 domains, at 2,693,733 to 2,694,350
_2547
HP15_2548: HP15_2548 - xanthine/uracil permease family protein, at 2,694,502 to 2,695,800
_2548
HP15_2549: HP15_2549 - adenine phosphoribosyltransferase, at 2,695,831 to 2,696,373
_2549
HP15_2550: HP15_2550 - fumarylacetoacetate hydrolase family protein, at 2,696,397 to 2,697,059
_2550
Position (kb)
2694
2695
2696 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2693.527 kb on - strand at 2693.544 kb on + strand at 2693.628 kb on + strand at 2693.708 kb on + strand at 2693.866 kb on + strand, within HP15_2547 at 2693.866 kb on + strand, within HP15_2547 at 2693.996 kb on + strand, within HP15_2547 at 2694.185 kb on - strand, within HP15_2547 at 2694.359 kb on - strand at 2694.492 kb on + strand at 2694.534 kb on + strand at 2694.686 kb on - strand, within HP15_2548 at 2694.789 kb on - strand, within HP15_2548 at 2694.811 kb on + strand, within HP15_2548 at 2694.819 kb on - strand, within HP15_2548 at 2694.848 kb on + strand, within HP15_2548 at 2694.856 kb on - strand, within HP15_2548 at 2694.856 kb on - strand, within HP15_2548 at 2694.927 kb on - strand, within HP15_2548 at 2695.171 kb on + strand, within HP15_2548 at 2695.257 kb on + strand, within HP15_2548 at 2695.265 kb on - strand, within HP15_2548 at 2695.291 kb on - strand, within HP15_2548 at 2695.389 kb on - strand, within HP15_2548 at 2695.514 kb on + strand, within HP15_2548 at 2695.585 kb on - strand, within HP15_2548 at 2695.699 kb on + strand at 2695.724 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.873 kb on + strand at 2695.881 kb on - strand at 2695.881 kb on - strand at 2695.881 kb on - strand at 2695.883 kb on + strand at 2695.891 kb on - strand, within HP15_2549 at 2695.929 kb on + strand, within HP15_2549 at 2696.038 kb on + strand, within HP15_2549 at 2696.046 kb on - strand, within HP15_2549 at 2696.046 kb on - strand, within HP15_2549 at 2696.046 kb on - strand, within HP15_2549 at 2696.053 kb on - strand, within HP15_2549 at 2696.076 kb on - strand, within HP15_2549 at 2696.152 kb on - strand, within HP15_2549 at 2696.348 kb on - strand at 2696.348 kb on - strand at 2696.499 kb on - strand, within HP15_2550 at 2696.499 kb on - strand, within HP15_2550 at 2696.640 kb on + strand, within HP15_2550 at 2696.684 kb on + strand, within HP15_2550 at 2696.769 kb on - strand, within HP15_2550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,693,527 - +0.2 2,693,544 + -0.1 2,693,628 + +1.2 2,693,708 + -2.5 2,693,866 + HP15_2547 0.22 +0.7 2,693,866 + HP15_2547 0.22 -0.6 2,693,996 + HP15_2547 0.43 +0.3 2,694,185 - HP15_2547 0.73 -0.0 2,694,359 - -0.3 2,694,492 + +0.8 2,694,534 + -1.5 2,694,686 - HP15_2548 0.14 -1.3 2,694,789 - HP15_2548 0.22 -1.6 2,694,811 + HP15_2548 0.24 -0.0 2,694,819 - HP15_2548 0.24 -0.4 2,694,848 + HP15_2548 0.27 -3.2 2,694,856 - HP15_2548 0.27 -1.1 2,694,856 - HP15_2548 0.27 +1.4 2,694,927 - HP15_2548 0.33 -0.3 2,695,171 + HP15_2548 0.52 -1.4 2,695,257 + HP15_2548 0.58 -3.2 2,695,265 - HP15_2548 0.59 -3.1 2,695,291 - HP15_2548 0.61 -2.0 2,695,389 - HP15_2548 0.68 -1.0 2,695,514 + HP15_2548 0.78 -0.6 2,695,585 - HP15_2548 0.83 -0.9 2,695,699 + -1.3 2,695,724 + -0.6 2,695,873 + +0.4 2,695,873 + -0.6 2,695,873 + -2.4 2,695,873 + -0.9 2,695,873 + -0.3 2,695,873 + -0.8 2,695,881 - -0.6 2,695,881 - -1.0 2,695,881 - -0.2 2,695,883 + -0.6 2,695,891 - HP15_2549 0.11 -1.5 2,695,929 + HP15_2549 0.18 -0.8 2,696,038 + HP15_2549 0.38 -0.3 2,696,046 - HP15_2549 0.40 -1.3 2,696,046 - HP15_2549 0.40 -1.2 2,696,046 - HP15_2549 0.40 -0.2 2,696,053 - HP15_2549 0.41 -1.1 2,696,076 - HP15_2549 0.45 -0.9 2,696,152 - HP15_2549 0.59 -1.1 2,696,348 - +0.1 2,696,348 - -1.4 2,696,499 - HP15_2550 0.15 +0.1 2,696,499 - HP15_2550 0.15 +0.4 2,696,640 + HP15_2550 0.37 -0.5 2,696,684 + HP15_2550 0.43 +1.0 2,696,769 - HP15_2550 0.56 -1.0
Or see this region's nucleotide sequence