Strain Fitness in Marinobacter adhaerens HP15 around HP15_2451

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2450 and HP15_2451 are separated by 40 nucleotidesHP15_2451 and HP15_2452 overlap by 4 nucleotidesHP15_2452 and HP15_2453 are separated by 2 nucleotides HP15_2450: HP15_2450 - conserved hypothetical protein, at 2,586,472 to 2,590,227 _2450 HP15_2451: HP15_2451 - ribonuclease, Rne/Rng family, at 2,590,268 to 2,591,749 _2451 HP15_2452: HP15_2452 - Maf-like protein, at 2,591,746 to 2,592,351 _2452 HP15_2453: HP15_2453 - rod shape-determining protein MreD, at 2,592,354 to 2,592,830 _2453 Position (kb) 2590 2591 2592Strain fitness (log2 ratio) -1 0 1 2 3at 2589.334 kb on + strand, within HP15_2450at 2589.342 kb on - strand, within HP15_2450at 2589.482 kb on + strand, within HP15_2450at 2589.484 kb on + strand, within HP15_2450at 2589.557 kb on + strand, within HP15_2450at 2589.557 kb on + strand, within HP15_2450at 2589.668 kb on + strand, within HP15_2450at 2589.813 kb on + strand, within HP15_2450at 2589.813 kb on + strand, within HP15_2450at 2589.866 kb on - strandat 2589.876 kb on - strandat 2590.243 kb on - strandat 2590.279 kb on - strandat 2590.284 kb on - strandat 2590.421 kb on + strand, within HP15_2451at 2590.537 kb on + strand, within HP15_2451at 2590.850 kb on - strand, within HP15_2451at 2590.903 kb on - strand, within HP15_2451at 2591.166 kb on - strand, within HP15_2451at 2591.404 kb on + strand, within HP15_2451at 2591.412 kb on - strand, within HP15_2451at 2592.003 kb on - strand, within HP15_2452at 2592.003 kb on - strand, within HP15_2452at 2592.008 kb on - strand, within HP15_2452at 2592.031 kb on + strand, within HP15_2452at 2592.073 kb on + strand, within HP15_2452at 2592.179 kb on - strand, within HP15_2452at 2592.205 kb on + strand, within HP15_2452at 2592.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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2,589,334 + HP15_2450 0.76 +1.1
2,589,342 - HP15_2450 0.76 +0.3
2,589,482 + HP15_2450 0.80 +0.3
2,589,484 + HP15_2450 0.80 -0.0
2,589,557 + HP15_2450 0.82 +0.0
2,589,557 + HP15_2450 0.82 -0.4
2,589,668 + HP15_2450 0.85 -0.1
2,589,813 + HP15_2450 0.89 -0.5
2,589,813 + HP15_2450 0.89 +0.7
2,589,866 - +0.6
2,589,876 - +1.2
2,590,243 - -0.6
2,590,279 - +1.3
2,590,284 - -0.8
2,590,421 + HP15_2451 0.10 +2.7
2,590,537 + HP15_2451 0.18 +3.2
2,590,850 - HP15_2451 0.39 +3.0
2,590,903 - HP15_2451 0.43 +2.3
2,591,166 - HP15_2451 0.61 +2.0
2,591,404 + HP15_2451 0.77 +2.8
2,591,412 - HP15_2451 0.77 +2.8
2,592,003 - HP15_2452 0.42 +0.7
2,592,003 - HP15_2452 0.42 -0.2
2,592,008 - HP15_2452 0.43 +0.3
2,592,031 + HP15_2452 0.47 +1.7
2,592,073 + HP15_2452 0.54 +0.8
2,592,179 - HP15_2452 0.71 +0.5
2,592,205 + HP15_2452 0.76 +2.3
2,592,360 - +0.8

Or see this region's nucleotide sequence