Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1946 and HP15_tRNA35 are separated by 55 nucleotides HP15_tRNA35 and HP15_1947 are separated by 182 nucleotides HP15_1947 and HP15_1948 are separated by 222 nucleotides
HP15_1946: HP15_1946 - membrane protein containing DUF6, transmembrane, at 2,065,503 to 2,066,453
_1946
HP15_tRNA35: HP15_tRNA35 - tRNA-Val, at 2,066,509 to 2,066,585
_tRNA35
HP15_1947: HP15_1947 - hypothetical protein, at 2,066,768 to 2,067,004
_1947
HP15_1948: HP15_1948 - hypothetical protein, at 2,067,227 to 2,067,409
_1948
Position (kb)
2066
2067
2068 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2065.778 kb on + strand, within HP15_1946 at 2065.791 kb on + strand, within HP15_1946 at 2065.992 kb on + strand, within HP15_1946 at 2066.062 kb on + strand, within HP15_1946 at 2066.080 kb on - strand, within HP15_1946 at 2066.101 kb on - strand, within HP15_1946 at 2066.108 kb on + strand, within HP15_1946 at 2066.151 kb on + strand, within HP15_1946 at 2066.159 kb on - strand, within HP15_1946 at 2066.177 kb on + strand, within HP15_1946 at 2066.185 kb on - strand, within HP15_1946 at 2066.185 kb on - strand, within HP15_1946 at 2066.248 kb on + strand, within HP15_1946 at 2066.250 kb on - strand, within HP15_1946 at 2066.269 kb on - strand, within HP15_1946 at 2066.302 kb on - strand, within HP15_1946 at 2066.304 kb on + strand, within HP15_1946 at 2066.307 kb on - strand, within HP15_1946 at 2066.309 kb on + strand, within HP15_1946 at 2066.317 kb on - strand, within HP15_1946 at 2066.359 kb on + strand at 2066.364 kb on + strand at 2066.393 kb on + strand at 2066.401 kb on - strand at 2066.505 kb on + strand at 2066.693 kb on + strand at 2066.725 kb on - strand at 2066.788 kb on + strand at 2066.945 kb on + strand, within HP15_1947 at 2066.949 kb on + strand, within HP15_1947 at 2067.110 kb on + strand at 2067.162 kb on - strand at 2067.162 kb on - strand at 2067.194 kb on + strand at 2067.222 kb on - strand at 2067.286 kb on - strand, within HP15_1948 at 2067.288 kb on + strand, within HP15_1948 at 2067.343 kb on + strand, within HP15_1948 at 2067.343 kb on + strand, within HP15_1948 at 2067.351 kb on - strand, within HP15_1948 at 2067.472 kb on - strand at 2067.762 kb on + strand at 2067.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 2,065,778 + HP15_1946 0.29 -0.1 2,065,791 + HP15_1946 0.30 -0.4 2,065,992 + HP15_1946 0.51 +0.1 2,066,062 + HP15_1946 0.59 -0.3 2,066,080 - HP15_1946 0.61 -0.6 2,066,101 - HP15_1946 0.63 +0.3 2,066,108 + HP15_1946 0.64 -0.1 2,066,151 + HP15_1946 0.68 +0.6 2,066,159 - HP15_1946 0.69 +0.1 2,066,177 + HP15_1946 0.71 -0.3 2,066,185 - HP15_1946 0.72 -1.5 2,066,185 - HP15_1946 0.72 -0.9 2,066,248 + HP15_1946 0.78 -0.0 2,066,250 - HP15_1946 0.79 +0.3 2,066,269 - HP15_1946 0.81 +0.3 2,066,302 - HP15_1946 0.84 -0.2 2,066,304 + HP15_1946 0.84 -0.5 2,066,307 - HP15_1946 0.85 +0.1 2,066,309 + HP15_1946 0.85 +0.3 2,066,317 - HP15_1946 0.86 +1.8 2,066,359 + +1.0 2,066,364 + -0.6 2,066,393 + +0.4 2,066,401 - -0.2 2,066,505 + +0.4 2,066,693 + -0.9 2,066,725 - -2.5 2,066,788 + +0.1 2,066,945 + HP15_1947 0.75 -0.1 2,066,949 + HP15_1947 0.76 -1.2 2,067,110 + +0.0 2,067,162 - -0.4 2,067,162 - +0.4 2,067,194 + -0.0 2,067,222 - -0.7 2,067,286 - HP15_1948 0.32 +1.4 2,067,288 + HP15_1948 0.33 -0.1 2,067,343 + HP15_1948 0.63 +0.7 2,067,343 + HP15_1948 0.63 -0.0 2,067,351 - HP15_1948 0.68 +0.2 2,067,472 - -1.0 2,067,762 + -0.7 2,067,908 + -0.2
Or see this region's nucleotide sequence