Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01920

Experiment: m.b. Chloride 600 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c01900 and PGA1_c01910 are separated by 146 nucleotidesPGA1_c01910 and PGA1_c01920 are separated by 190 nucleotidesPGA1_c01920 and PGA1_c01930 are separated by 2 nucleotides PGA1_c01900: PGA1_c01900 - DNA-directed RNA polymerase subunit alpha, at 172,906 to 173,922 _c01900 PGA1_c01910: PGA1_c01910 - 50S ribosomal protein L17, at 174,069 to 174,491 _c01910 PGA1_c01920: PGA1_c01920 - protease DegQ, at 174,682 to 176,079 _c01920 PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404 _c01930 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 173.929 kb on + strandat 174.654 kb on - strandat 174.694 kb on + strandat 174.702 kb on - strandat 174.714 kb on + strandat 174.722 kb on - strandat 174.742 kb on - strandat 174.742 kb on - strandat 174.742 kb on - strandat 174.742 kb on - strandat 174.747 kb on - strandat 174.821 kb on + strandat 174.874 kb on + strand, within PGA1_c01920at 174.924 kb on + strand, within PGA1_c01920at 174.926 kb on - strand, within PGA1_c01920at 174.933 kb on - strand, within PGA1_c01920at 174.933 kb on - strand, within PGA1_c01920at 174.937 kb on + strand, within PGA1_c01920at 174.945 kb on - strand, within PGA1_c01920at 174.947 kb on + strand, within PGA1_c01920at 174.953 kb on + strand, within PGA1_c01920at 174.958 kb on + strand, within PGA1_c01920at 174.958 kb on + strand, within PGA1_c01920at 174.958 kb on + strand, within PGA1_c01920at 174.958 kb on + strand, within PGA1_c01920at 174.961 kb on - strand, within PGA1_c01920at 174.961 kb on - strand, within PGA1_c01920at 175.022 kb on - strand, within PGA1_c01920at 175.022 kb on - strand, within PGA1_c01920at 175.117 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.133 kb on + strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.141 kb on - strand, within PGA1_c01920at 175.188 kb on + strand, within PGA1_c01920at 175.259 kb on + strand, within PGA1_c01920at 175.266 kb on - strand, within PGA1_c01920at 175.288 kb on - strand, within PGA1_c01920at 175.310 kb on - strand, within PGA1_c01920at 175.487 kb on - strand, within PGA1_c01920at 175.498 kb on - strand, within PGA1_c01920at 175.529 kb on + strand, within PGA1_c01920at 175.702 kb on + strand, within PGA1_c01920at 175.737 kb on + strand, within PGA1_c01920at 175.738 kb on - strand, within PGA1_c01920at 175.793 kb on + strand, within PGA1_c01920at 175.793 kb on + strand, within PGA1_c01920at 175.801 kb on - strand, within PGA1_c01920at 175.870 kb on + strand, within PGA1_c01920at 175.885 kb on - strand, within PGA1_c01920at 175.928 kb on + strand, within PGA1_c01920at 175.982 kb on + strandat 176.042 kb on + strandat 176.140 kb on - strandat 176.247 kb on + strand, within PGA1_c01930at 176.336 kb on - strand, within PGA1_c01930at 176.336 kb on - strand, within PGA1_c01930at 176.345 kb on + strand, within PGA1_c01930at 176.431 kb on - strand, within PGA1_c01930at 176.506 kb on - strand, within PGA1_c01930at 176.538 kb on - strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.570 kb on - strand, within PGA1_c01930at 176.570 kb on - strand, within PGA1_c01930at 176.579 kb on + strand, within PGA1_c01930at 176.651 kb on - strand, within PGA1_c01930at 176.656 kb on + strand, within PGA1_c01930at 176.789 kb on - strand, within PGA1_c01930at 176.861 kb on + strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.878 kb on + strand, within PGA1_c01930at 176.878 kb on + strand, within PGA1_c01930at 176.878 kb on + strand, within PGA1_c01930at 176.886 kb on - strand, within PGA1_c01930at 176.886 kb on - strand, within PGA1_c01930at 176.900 kb on + strand, within PGA1_c01930at 177.031 kb on - strand, within PGA1_c01930at 177.034 kb on + strand, within PGA1_c01930at 177.074 kb on + strand, within PGA1_c01930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM
remove
173,929 + +1.2
174,654 - -0.5
174,694 + -1.5
174,702 - -0.8
174,714 + -2.5
174,722 - -1.7
174,742 - -3.2
174,742 - -0.4
174,742 - -0.3
174,742 - +1.3
174,747 - +0.3
174,821 + -1.9
174,874 + PGA1_c01920 0.14 +0.5
174,924 + PGA1_c01920 0.17 -1.5
174,926 - PGA1_c01920 0.17 -1.1
174,933 - PGA1_c01920 0.18 +0.9
174,933 - PGA1_c01920 0.18 -0.2
174,937 + PGA1_c01920 0.18 -2.6
174,945 - PGA1_c01920 0.19 -1.9
174,947 + PGA1_c01920 0.19 -1.6
174,953 + PGA1_c01920 0.19 -2.9
174,958 + PGA1_c01920 0.20 -0.1
174,958 + PGA1_c01920 0.20 -0.1
174,958 + PGA1_c01920 0.20 -0.6
174,958 + PGA1_c01920 0.20 -2.4
174,961 - PGA1_c01920 0.20 -1.3
174,961 - PGA1_c01920 0.20 +0.5
175,022 - PGA1_c01920 0.24 +0.5
175,022 - PGA1_c01920 0.24 +2.1
175,117 + PGA1_c01920 0.31 -1.0
175,133 + PGA1_c01920 0.32 -1.3
175,133 + PGA1_c01920 0.32 +2.2
175,133 + PGA1_c01920 0.32 -0.8
175,133 + PGA1_c01920 0.32 +0.3
175,133 + PGA1_c01920 0.32 -0.4
175,133 + PGA1_c01920 0.32 -0.6
175,133 + PGA1_c01920 0.32 -0.0
175,141 - PGA1_c01920 0.33 +0.8
175,141 - PGA1_c01920 0.33 -1.3
175,141 - PGA1_c01920 0.33 -1.6
175,141 - PGA1_c01920 0.33 -0.8
175,141 - PGA1_c01920 0.33 -1.9
175,141 - PGA1_c01920 0.33 +3.1
175,141 - PGA1_c01920 0.33 -1.4
175,141 - PGA1_c01920 0.33 +0.6
175,141 - PGA1_c01920 0.33 -0.5
175,188 + PGA1_c01920 0.36 +1.8
175,259 + PGA1_c01920 0.41 +0.4
175,266 - PGA1_c01920 0.42 -1.1
175,288 - PGA1_c01920 0.43 -2.8
175,310 - PGA1_c01920 0.45 +0.7
175,487 - PGA1_c01920 0.58 -0.1
175,498 - PGA1_c01920 0.58 -2.0
175,529 + PGA1_c01920 0.61 -1.5
175,702 + PGA1_c01920 0.73 +0.7
175,737 + PGA1_c01920 0.75 -1.2
175,738 - PGA1_c01920 0.76 -1.7
175,793 + PGA1_c01920 0.79 -0.8
175,793 + PGA1_c01920 0.79 -1.3
175,801 - PGA1_c01920 0.80 -0.6
175,870 + PGA1_c01920 0.85 -3.4
175,885 - PGA1_c01920 0.86 -3.2
175,928 + PGA1_c01920 0.89 -2.4
175,982 + -1.9
176,042 + -1.7
176,140 - +1.0
176,247 + PGA1_c01930 0.12 -1.3
176,336 - PGA1_c01930 0.19 -1.8
176,336 - PGA1_c01930 0.19 -1.3
176,345 + PGA1_c01930 0.20 -1.5
176,431 - PGA1_c01930 0.26 -3.0
176,506 - PGA1_c01930 0.32 -0.4
176,538 - PGA1_c01930 0.34 -1.7
176,562 + PGA1_c01930 0.36 -2.0
176,562 + PGA1_c01930 0.36 -2.7
176,562 + PGA1_c01930 0.36 -0.4
176,562 + PGA1_c01930 0.36 -0.7
176,562 + PGA1_c01930 0.36 -0.2
176,562 + PGA1_c01930 0.36 -1.5
176,570 - PGA1_c01930 0.37 -0.4
176,570 - PGA1_c01930 0.37 +0.0
176,579 + PGA1_c01930 0.38 +0.7
176,651 - PGA1_c01930 0.43 +0.4
176,656 + PGA1_c01930 0.43 +0.7
176,789 - PGA1_c01930 0.53 -0.3
176,861 + PGA1_c01930 0.59 -1.9
176,869 - PGA1_c01930 0.59 -0.5
176,869 - PGA1_c01930 0.59 -0.7
176,869 - PGA1_c01930 0.59 +2.4
176,869 - PGA1_c01930 0.59 -0.5
176,869 - PGA1_c01930 0.59 -0.3
176,869 - PGA1_c01930 0.59 +0.4
176,869 - PGA1_c01930 0.59 -0.6
176,878 + PGA1_c01930 0.60 +0.3
176,878 + PGA1_c01930 0.60 +1.5
176,878 + PGA1_c01930 0.60 -1.9
176,886 - PGA1_c01930 0.61 -1.1
176,886 - PGA1_c01930 0.61 +0.1
176,900 + PGA1_c01930 0.62 -1.0
177,031 - PGA1_c01930 0.72 +0.5
177,034 + PGA1_c01930 0.72 +1.8
177,074 + PGA1_c01930 0.75 -1.6

Or see this region's nucleotide sequence