Strain Fitness in Marinobacter adhaerens HP15 around HP15_1715

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1714 and HP15_1715 are separated by 19 nucleotidesHP15_1715 and HP15_1716 overlap by 1 nucleotidesHP15_1716 and HP15_1717 are separated by 33 nucleotides HP15_1714: HP15_1714 - alpha-glucan phosphorylase, at 1,811,731 to 1,814,316 _1714 HP15_1715: HP15_1715 - phospholipase/carboxylesterase family protein, at 1,814,336 to 1,814,890 _1715 HP15_1716: HP15_1716 - hypothetical protein, at 1,814,890 to 1,814,994 _1716 HP15_1717: HP15_1717 - phospholipid/glycerol acyltransferase, at 1,815,028 to 1,816,254 _1717 Position (kb) 1814 1815Strain fitness (log2 ratio) -2 -1 0 1at 1813.337 kb on - strand, within HP15_1714at 1813.430 kb on + strand, within HP15_1714at 1813.497 kb on - strand, within HP15_1714at 1813.520 kb on - strand, within HP15_1714at 1813.520 kb on - strand, within HP15_1714at 1813.520 kb on - strand, within HP15_1714at 1813.640 kb on - strand, within HP15_1714at 1813.647 kb on - strand, within HP15_1714at 1813.670 kb on + strand, within HP15_1714at 1813.678 kb on - strand, within HP15_1714at 1813.724 kb on - strand, within HP15_1714at 1813.742 kb on + strand, within HP15_1714at 1813.777 kb on + strand, within HP15_1714at 1813.809 kb on + strand, within HP15_1714at 1813.854 kb on + strand, within HP15_1714at 1813.903 kb on - strand, within HP15_1714at 1814.220 kb on + strandat 1814.254 kb on + strandat 1814.312 kb on - strandat 1814.313 kb on - strandat 1814.319 kb on - strandat 1814.440 kb on + strand, within HP15_1715at 1814.440 kb on + strand, within HP15_1715at 1814.504 kb on - strand, within HP15_1715at 1814.738 kb on - strand, within HP15_1715at 1814.793 kb on + strand, within HP15_1715at 1814.801 kb on - strand, within HP15_1715at 1814.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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1,813,337 - HP15_1714 0.62 -0.2
1,813,430 + HP15_1714 0.66 +0.3
1,813,497 - HP15_1714 0.68 -0.5
1,813,520 - HP15_1714 0.69 +0.2
1,813,520 - HP15_1714 0.69 +0.0
1,813,520 - HP15_1714 0.69 -2.5
1,813,640 - HP15_1714 0.74 -0.4
1,813,647 - HP15_1714 0.74 -0.1
1,813,670 + HP15_1714 0.75 +0.2
1,813,678 - HP15_1714 0.75 +0.2
1,813,724 - HP15_1714 0.77 -0.6
1,813,742 + HP15_1714 0.78 +0.8
1,813,777 + HP15_1714 0.79 +1.2
1,813,809 + HP15_1714 0.80 +0.5
1,813,854 + HP15_1714 0.82 +0.5
1,813,903 - HP15_1714 0.84 +0.2
1,814,220 + +0.3
1,814,254 + +0.9
1,814,312 - -1.5
1,814,313 - -1.4
1,814,319 - -1.1
1,814,440 + HP15_1715 0.19 -0.1
1,814,440 + HP15_1715 0.19 +0.1
1,814,504 - HP15_1715 0.30 -0.3
1,814,738 - HP15_1715 0.72 -0.8
1,814,793 + HP15_1715 0.82 -2.1
1,814,801 - HP15_1715 0.84 +0.2
1,814,857 + -1.4

Or see this region's nucleotide sequence