Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1659 and HP15_1660 are separated by 16 nucleotides HP15_1660 and HP15_1661 are separated by 195 nucleotides HP15_1661 and HP15_1662 are separated by 58 nucleotides HP15_1662 and HP15_1663 are separated by 321 nucleotides
HP15_1659: HP15_1659 - hypothetical protein, at 1,753,751 to 1,753,873
_1659
HP15_1660: HP15_1660 - hypothetical protein, at 1,753,890 to 1,754,024
_1660
HP15_1661: HP15_1661 - hydrolase-like protein, at 1,754,220 to 1,754,540
_1661
HP15_1662: HP15_1662 - conserved hypothetical protein, secreted, at 1,754,599 to 1,754,850
_1662
HP15_1663: HP15_1663 - conserved hypothetical protein, at 1,755,172 to 1,756,167
_1663
Position (kb)
1754
1755 Strain fitness (log2 ratio)
-1
0
1 at 1753.749 kb on + strand at 1753.858 kb on + strand, within HP15_1659 at 1753.858 kb on + strand, within HP15_1659 at 1753.984 kb on - strand, within HP15_1660 at 1753.994 kb on - strand, within HP15_1660 at 1754.289 kb on + strand, within HP15_1661 at 1754.412 kb on + strand, within HP15_1661 at 1754.417 kb on + strand, within HP15_1661 at 1754.465 kb on - strand, within HP15_1661 at 1754.465 kb on - strand, within HP15_1661 at 1754.548 kb on - strand at 1754.585 kb on - strand at 1754.653 kb on - strand, within HP15_1662 at 1754.668 kb on - strand, within HP15_1662 at 1754.668 kb on - strand, within HP15_1662 at 1754.730 kb on - strand, within HP15_1662 at 1754.743 kb on - strand, within HP15_1662 at 1754.929 kb on + strand at 1754.929 kb on + strand at 1754.934 kb on + strand at 1755.004 kb on - strand at 1755.249 kb on + strand at 1755.347 kb on - strand, within HP15_1663 at 1755.350 kb on + strand, within HP15_1663 at 1755.363 kb on - strand, within HP15_1663 at 1755.365 kb on + strand, within HP15_1663 at 1755.365 kb on + strand, within HP15_1663 at 1755.481 kb on + strand, within HP15_1663 at 1755.512 kb on + strand, within HP15_1663 at 1755.520 kb on - strand, within HP15_1663 at 1755.585 kb on - strand, within HP15_1663 at 1755.599 kb on + strand, within HP15_1663 at 1755.631 kb on + strand, within HP15_1663 at 1755.631 kb on + strand, within HP15_1663 at 1755.633 kb on - strand, within HP15_1663 at 1755.633 kb on - strand, within HP15_1663 at 1755.642 kb on + strand, within HP15_1663 at 1755.650 kb on + strand, within HP15_1663
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,753,749 + -0.4 1,753,858 + HP15_1659 0.87 -0.8 1,753,858 + HP15_1659 0.87 -0.7 1,753,984 - HP15_1660 0.70 +0.1 1,753,994 - HP15_1660 0.77 -0.4 1,754,289 + HP15_1661 0.21 +0.6 1,754,412 + HP15_1661 0.60 -0.4 1,754,417 + HP15_1661 0.61 +0.4 1,754,465 - HP15_1661 0.76 +0.5 1,754,465 - HP15_1661 0.76 -0.1 1,754,548 - -0.3 1,754,585 - -0.3 1,754,653 - HP15_1662 0.21 -0.4 1,754,668 - HP15_1662 0.27 -0.3 1,754,668 - HP15_1662 0.27 -0.3 1,754,730 - HP15_1662 0.52 -0.1 1,754,743 - HP15_1662 0.57 -1.2 1,754,929 + +0.2 1,754,929 + -0.2 1,754,934 + -0.9 1,755,004 - -1.6 1,755,249 + -1.2 1,755,347 - HP15_1663 0.18 -0.9 1,755,350 + HP15_1663 0.18 -0.1 1,755,363 - HP15_1663 0.19 -1.1 1,755,365 + HP15_1663 0.19 +0.1 1,755,365 + HP15_1663 0.19 -0.1 1,755,481 + HP15_1663 0.31 -0.2 1,755,512 + HP15_1663 0.34 -0.4 1,755,520 - HP15_1663 0.35 +0.1 1,755,585 - HP15_1663 0.41 +0.2 1,755,599 + HP15_1663 0.43 -0.2 1,755,631 + HP15_1663 0.46 +0.3 1,755,631 + HP15_1663 0.46 -1.1 1,755,633 - HP15_1663 0.46 +0.1 1,755,633 - HP15_1663 0.46 -0.4 1,755,642 + HP15_1663 0.47 +0.6 1,755,650 + HP15_1663 0.48 +0.8
Or see this region's nucleotide sequence