Experiment: m.b. Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14900 and PGA1_c14910 are separated by 201 nucleotides PGA1_c14910 and PGA1_c14920 are separated by 34 nucleotides
PGA1_c14900: PGA1_c14900 - delta-aminolevulinic acid dehydratase HemB, at 1,546,948 to 1,547,946
_c14900
PGA1_c14910: PGA1_c14910 - hypothetical protein, at 1,548,148 to 1,548,672
_c14910
PGA1_c14920: PGA1_c14920 - transcription-repair-coupling factor Mfd, at 1,548,707 to 1,552,174
_c14920
Position (kb)
1548
1549 Strain fitness (log2 ratio)
-1
0
1
2 at 1548.086 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.114 kb on - strand at 1548.114 kb on - strand at 1548.131 kb on - strand at 1548.138 kb on + strand at 1548.156 kb on + strand at 1548.156 kb on - strand at 1548.181 kb on + strand at 1548.229 kb on + strand, within PGA1_c14910 at 1548.236 kb on - strand, within PGA1_c14910 at 1548.369 kb on + strand, within PGA1_c14910 at 1548.369 kb on + strand, within PGA1_c14910 at 1548.401 kb on + strand, within PGA1_c14910 at 1548.409 kb on - strand, within PGA1_c14910 at 1548.911 kb on + strand at 1549.016 kb on - strand at 1549.210 kb on + strand, within PGA1_c14920 at 1549.213 kb on - strand, within PGA1_c14920 at 1549.252 kb on - strand, within PGA1_c14920 at 1549.313 kb on - strand, within PGA1_c14920 at 1549.511 kb on - strand, within PGA1_c14920 at 1549.521 kb on - strand, within PGA1_c14920 at 1549.537 kb on + strand, within PGA1_c14920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 600 mM remove 1,548,086 + -0.2 1,548,106 + +0.2 1,548,106 + -0.7 1,548,106 + -1.4 1,548,106 + -0.8 1,548,106 + -0.2 1,548,106 + +0.1 1,548,106 + +0.2 1,548,106 + +0.5 1,548,114 - +0.5 1,548,114 - -0.8 1,548,131 - -0.2 1,548,138 + +1.2 1,548,156 + +0.4 1,548,156 - -0.4 1,548,181 + +0.9 1,548,229 + PGA1_c14910 0.15 -1.1 1,548,236 - PGA1_c14910 0.17 -1.1 1,548,369 + PGA1_c14910 0.42 +0.2 1,548,369 + PGA1_c14910 0.42 -1.5 1,548,401 + PGA1_c14910 0.48 -1.5 1,548,409 - PGA1_c14910 0.50 +1.2 1,548,911 + +0.2 1,549,016 - +2.2 1,549,210 + PGA1_c14920 0.15 -1.0 1,549,213 - PGA1_c14920 0.15 +0.8 1,549,252 - PGA1_c14920 0.16 -0.3 1,549,313 - PGA1_c14920 0.17 -1.3 1,549,511 - PGA1_c14920 0.23 -0.4 1,549,521 - PGA1_c14920 0.23 +0.0 1,549,537 + PGA1_c14920 0.24 +0.3
Or see this region's nucleotide sequence