Strain Fitness in Marinobacter adhaerens HP15 around HP15_1358

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1357 and HP15_1359 are separated by 68 nucleotidesHP15_1359 and HP15_1358 overlap by 9 nucleotidesHP15_1358 and HP15_1360 are separated by 126 nucleotides HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427 _1357 HP15_1359: HP15_1359 - hypothetical protein, at 1,428,496 to 1,428,720 _1359 HP15_1358: HP15_1358 - formyltetrahydrofolate deformylase, at 1,428,712 to 1,429,425 _1358 HP15_1360: HP15_1360 - DNA gyrase subunit A-like protein, at 1,429,552 to 1,432,173 _1360 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -3 -2 -1 0 1at 1427.745 kb on - strand, within HP15_1357at 1427.814 kb on + strand, within HP15_1357at 1427.831 kb on + strand, within HP15_1357at 1427.871 kb on + strand, within HP15_1357at 1427.911 kb on + strand, within HP15_1357at 1427.913 kb on - strand, within HP15_1357at 1428.151 kb on + strand, within HP15_1357at 1428.493 kb on + strandat 1428.749 kb on + strandat 1428.749 kb on + strandat 1428.836 kb on - strand, within HP15_1358at 1429.023 kb on - strand, within HP15_1358at 1429.064 kb on + strand, within HP15_1358at 1429.181 kb on + strand, within HP15_1358at 1429.192 kb on + strand, within HP15_1358at 1429.192 kb on + strand, within HP15_1358at 1429.200 kb on - strand, within HP15_1358at 1429.200 kb on - strand, within HP15_1358at 1429.317 kb on + strand, within HP15_1358at 1429.334 kb on - strand, within HP15_1358at 1429.334 kb on - strand, within HP15_1358at 1429.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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1,427,745 - HP15_1357 0.61 -0.7
1,427,814 + HP15_1357 0.65 +0.3
1,427,831 + HP15_1357 0.66 -0.8
1,427,871 + HP15_1357 0.68 +1.1
1,427,911 + HP15_1357 0.71 +1.3
1,427,913 - HP15_1357 0.71 +0.5
1,428,151 + HP15_1357 0.84 +0.0
1,428,493 + -1.6
1,428,749 + -2.8
1,428,749 + -0.8
1,428,836 - HP15_1358 0.17 -2.0
1,429,023 - HP15_1358 0.44 -2.8
1,429,064 + HP15_1358 0.49 -1.7
1,429,181 + HP15_1358 0.66 -1.9
1,429,192 + HP15_1358 0.67 -0.5
1,429,192 + HP15_1358 0.67 -1.5
1,429,200 - HP15_1358 0.68 -0.3
1,429,200 - HP15_1358 0.68 -2.2
1,429,317 + HP15_1358 0.85 -1.1
1,429,334 - HP15_1358 0.87 -1.7
1,429,334 - HP15_1358 0.87 -2.9
1,429,409 - -1.3

Or see this region's nucleotide sequence