Experiment: m.b. Cholin acetate 153.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1190 and HP15_1191 are separated by 27 nucleotides HP15_1191 and HP15_1192 are separated by 36 nucleotides HP15_1192 and HP15_1193 are separated by 97 nucleotides
HP15_1190: HP15_1190 - methyl-accepting chemotaxis sensory transducer, at 1,224,081 to 1,225,706
_1190
HP15_1191: HP15_1191 - metallo-beta-lactamase family protein, at 1,225,734 to 1,226,381
_1191
HP15_1192: HP15_1192 - cytochrome c family protein, at 1,226,418 to 1,226,996
_1192
HP15_1193: HP15_1193 - conserved hypothetical protein, at 1,227,094 to 1,227,768
_1193
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-1
0
1
2 at 1224.751 kb on + strand, within HP15_1190 at 1224.759 kb on - strand, within HP15_1190 at 1224.759 kb on - strand, within HP15_1190 at 1224.886 kb on - strand, within HP15_1190 at 1224.920 kb on - strand, within HP15_1190 at 1224.929 kb on - strand, within HP15_1190 at 1224.934 kb on + strand, within HP15_1190 at 1224.936 kb on - strand, within HP15_1190 at 1224.936 kb on - strand, within HP15_1190 at 1224.941 kb on - strand, within HP15_1190 at 1224.942 kb on - strand, within HP15_1190 at 1225.068 kb on + strand, within HP15_1190 at 1225.076 kb on - strand, within HP15_1190 at 1225.122 kb on + strand, within HP15_1190 at 1225.122 kb on + strand, within HP15_1190 at 1225.122 kb on + strand, within HP15_1190 at 1225.335 kb on + strand, within HP15_1190 at 1225.450 kb on + strand, within HP15_1190 at 1225.466 kb on - strand, within HP15_1190 at 1225.473 kb on - strand, within HP15_1190 at 1225.587 kb on + strand at 1225.740 kb on - strand at 1225.740 kb on - strand at 1225.784 kb on + strand at 1225.865 kb on + strand, within HP15_1191 at 1225.990 kb on - strand, within HP15_1191 at 1225.990 kb on - strand, within HP15_1191 at 1225.992 kb on + strand, within HP15_1191 at 1226.174 kb on + strand, within HP15_1191 at 1226.249 kb on - strand, within HP15_1191 at 1226.317 kb on + strand at 1226.394 kb on - strand at 1226.500 kb on - strand, within HP15_1192 at 1226.502 kb on - strand, within HP15_1192 at 1226.623 kb on - strand, within HP15_1192 at 1226.641 kb on + strand, within HP15_1192 at 1226.726 kb on + strand, within HP15_1192 at 1226.812 kb on - strand, within HP15_1192 at 1226.931 kb on - strand, within HP15_1192 at 1227.012 kb on + strand at 1227.134 kb on + strand at 1227.150 kb on + strand at 1227.281 kb on + strand, within HP15_1193 at 1227.323 kb on - strand, within HP15_1193
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM remove 1,224,751 + HP15_1190 0.41 -0.8 1,224,759 - HP15_1190 0.42 +0.5 1,224,759 - HP15_1190 0.42 -0.1 1,224,886 - HP15_1190 0.50 -0.4 1,224,920 - HP15_1190 0.52 +0.6 1,224,929 - HP15_1190 0.52 +0.9 1,224,934 + HP15_1190 0.52 -0.2 1,224,936 - HP15_1190 0.53 +0.1 1,224,936 - HP15_1190 0.53 +0.2 1,224,941 - HP15_1190 0.53 +0.2 1,224,942 - HP15_1190 0.53 -0.1 1,225,068 + HP15_1190 0.61 +1.8 1,225,076 - HP15_1190 0.61 +0.0 1,225,122 + HP15_1190 0.64 -0.7 1,225,122 + HP15_1190 0.64 -0.9 1,225,122 + HP15_1190 0.64 -0.3 1,225,335 + HP15_1190 0.77 -0.9 1,225,450 + HP15_1190 0.84 -0.7 1,225,466 - HP15_1190 0.85 +0.3 1,225,473 - HP15_1190 0.86 -0.1 1,225,587 + +0.5 1,225,740 - -0.5 1,225,740 - +1.2 1,225,784 + -0.4 1,225,865 + HP15_1191 0.20 +0.7 1,225,990 - HP15_1191 0.40 -1.0 1,225,990 - HP15_1191 0.40 -0.2 1,225,992 + HP15_1191 0.40 +0.1 1,226,174 + HP15_1191 0.68 -0.2 1,226,249 - HP15_1191 0.79 +0.5 1,226,317 + -0.0 1,226,394 - +0.2 1,226,500 - HP15_1192 0.14 +0.2 1,226,502 - HP15_1192 0.15 -0.7 1,226,623 - HP15_1192 0.35 -0.4 1,226,641 + HP15_1192 0.39 +1.0 1,226,726 + HP15_1192 0.53 +1.2 1,226,812 - HP15_1192 0.68 +1.3 1,226,931 - HP15_1192 0.89 +0.5 1,227,012 + +0.2 1,227,134 + +0.4 1,227,150 + +0.7 1,227,281 + HP15_1193 0.28 +0.8 1,227,323 - HP15_1193 0.34 -0.7
Or see this region's nucleotide sequence