Strain Fitness in Marinobacter adhaerens HP15 around HP15_1154

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1152 and HP15_1153 are separated by 7 nucleotidesHP15_1153 and HP15_1154 are separated by 82 nucleotidesHP15_1154 and HP15_1155 are separated by 101 nucleotides HP15_1152: HP15_1152 - conserved hypothetical protein, at 1,186,544 to 1,187,128 _1152 HP15_1153: HP15_1153 - conserved hypothetical protein containing DUF1853, at 1,187,136 to 1,188,032 _1153 HP15_1154: HP15_1154 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,188,115 to 1,188,537 _1154 HP15_1155: HP15_1155 - conserved hypothetical protein, at 1,188,639 to 1,190,063 _1155 Position (kb) 1188 1189Strain fitness (log2 ratio) -2 -1 0 1at 1187.245 kb on + strand, within HP15_1153at 1187.415 kb on - strand, within HP15_1153at 1187.515 kb on - strand, within HP15_1153at 1187.579 kb on - strand, within HP15_1153at 1187.771 kb on - strand, within HP15_1153at 1187.981 kb on - strandat 1187.994 kb on - strandat 1188.004 kb on - strandat 1188.080 kb on + strandat 1188.175 kb on + strand, within HP15_1154at 1188.378 kb on + strand, within HP15_1154at 1188.378 kb on + strand, within HP15_1154at 1188.386 kb on - strand, within HP15_1154at 1188.509 kb on - strandat 1188.538 kb on + strandat 1188.546 kb on - strandat 1188.546 kb on - strandat 1188.756 kb on + strandat 1188.808 kb on + strand, within HP15_1155at 1188.814 kb on - strand, within HP15_1155at 1188.851 kb on - strand, within HP15_1155at 1189.114 kb on + strand, within HP15_1155at 1189.204 kb on - strand, within HP15_1155at 1189.257 kb on + strand, within HP15_1155at 1189.299 kb on + strand, within HP15_1155at 1189.327 kb on + strand, within HP15_1155at 1189.367 kb on + strand, within HP15_1155at 1189.388 kb on - strand, within HP15_1155at 1189.458 kb on - strand, within HP15_1155at 1189.476 kb on - strand, within HP15_1155at 1189.476 kb on - strand, within HP15_1155

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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1,187,245 + HP15_1153 0.12 -0.0
1,187,415 - HP15_1153 0.31 -0.1
1,187,515 - HP15_1153 0.42 +0.1
1,187,579 - HP15_1153 0.49 -2.7
1,187,771 - HP15_1153 0.71 +0.2
1,187,981 - +0.3
1,187,994 - +0.8
1,188,004 - -0.9
1,188,080 + +0.8
1,188,175 + HP15_1154 0.14 -0.0
1,188,378 + HP15_1154 0.62 -0.1
1,188,378 + HP15_1154 0.62 -0.1
1,188,386 - HP15_1154 0.64 +1.0
1,188,509 - -1.1
1,188,538 + -0.4
1,188,546 - +0.5
1,188,546 - +1.3
1,188,756 + +0.1
1,188,808 + HP15_1155 0.12 -1.0
1,188,814 - HP15_1155 0.12 +0.8
1,188,851 - HP15_1155 0.15 +0.6
1,189,114 + HP15_1155 0.33 -2.2
1,189,204 - HP15_1155 0.40 +0.8
1,189,257 + HP15_1155 0.43 +0.4
1,189,299 + HP15_1155 0.46 -0.5
1,189,327 + HP15_1155 0.48 +0.1
1,189,367 + HP15_1155 0.51 +0.3
1,189,388 - HP15_1155 0.53 +0.7
1,189,458 - HP15_1155 0.57 -0.3
1,189,476 - HP15_1155 0.59 +0.8
1,189,476 - HP15_1155 0.59 +0.2

Or see this region's nucleotide sequence