Strain Fitness in Shewanella amazonensis SB2B around Sama_3532

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3531 and Sama_3532 are separated by 69 nucleotidesSama_3532 and Sama_3533 are separated by 40 nucleotidesSama_3533 and Sama_3534 are separated by 19 nucleotides Sama_3531: Sama_3531 - molybdenum ABC transporter, ATP-binding protein (RefSeq), at 4,163,542 to 4,164,654 _3531 Sama_3532: Sama_3532 - hypothetical protein (RefSeq), at 4,164,724 to 4,165,086 _3532 Sama_3533: Sama_3533 - hypothetical protein (RefSeq), at 4,165,127 to 4,165,651 _3533 Sama_3534: Sama_3534 - response regulator receiver protein (RefSeq), at 4,165,671 to 4,166,348 _3534 Position (kb) 4164 4165 4166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4163.784 kb on + strand, within Sama_3531at 4163.784 kb on + strand, within Sama_3531at 4163.785 kb on - strand, within Sama_3531at 4163.785 kb on - strand, within Sama_3531at 4163.785 kb on - strand, within Sama_3531at 4163.785 kb on - strand, within Sama_3531at 4163.785 kb on - strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.786 kb on + strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.787 kb on - strand, within Sama_3531at 4163.914 kb on - strand, within Sama_3531at 4164.011 kb on + strand, within Sama_3531at 4164.012 kb on - strand, within Sama_3531at 4164.014 kb on + strand, within Sama_3531at 4164.014 kb on + strand, within Sama_3531at 4164.014 kb on + strand, within Sama_3531at 4164.014 kb on + strand, within Sama_3531at 4164.014 kb on + strand, within Sama_3531at 4164.015 kb on - strand, within Sama_3531at 4164.015 kb on - strand, within Sama_3531at 4164.015 kb on - strand, within Sama_3531at 4164.015 kb on - strand, within Sama_3531at 4164.067 kb on + strand, within Sama_3531at 4164.067 kb on + strand, within Sama_3531at 4164.068 kb on - strand, within Sama_3531at 4164.102 kb on + strand, within Sama_3531at 4164.102 kb on + strand, within Sama_3531at 4164.103 kb on - strand, within Sama_3531at 4164.103 kb on - strand, within Sama_3531at 4164.114 kb on + strand, within Sama_3531at 4164.114 kb on + strand, within Sama_3531at 4164.114 kb on + strand, within Sama_3531at 4164.114 kb on + strand, within Sama_3531at 4164.114 kb on + strand, within Sama_3531at 4164.114 kb on + strand, within Sama_3531at 4164.115 kb on - strand, within Sama_3531at 4164.115 kb on - strand, within Sama_3531at 4164.159 kb on + strand, within Sama_3531at 4164.159 kb on + strand, within Sama_3531at 4164.159 kb on + strand, within Sama_3531at 4164.159 kb on + strand, within Sama_3531at 4164.160 kb on - strand, within Sama_3531at 4164.160 kb on - strand, within Sama_3531at 4164.160 kb on - strand, within Sama_3531at 4164.160 kb on - strand, within Sama_3531at 4164.171 kb on + strand, within Sama_3531at 4164.172 kb on - strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.183 kb on + strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.184 kb on - strand, within Sama_3531at 4164.265 kb on - strand, within Sama_3531at 4164.407 kb on + strand, within Sama_3531at 4164.407 kb on + strand, within Sama_3531at 4164.408 kb on - strand, within Sama_3531at 4164.408 kb on - strand, within Sama_3531at 4164.408 kb on - strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.477 kb on + strand, within Sama_3531at 4164.478 kb on - strand, within Sama_3531at 4164.478 kb on - strand, within Sama_3531at 4164.478 kb on - strand, within Sama_3531at 4164.605 kb on + strandat 4164.605 kb on + strandat 4164.605 kb on + strandat 4164.605 kb on + strandat 4164.605 kb on + strandat 4164.606 kb on - strandat 4164.606 kb on - strandat 4164.606 kb on - strandat 4164.652 kb on + strandat 4164.652 kb on + strandat 4164.652 kb on + strandat 4164.652 kb on + strandat 4164.652 kb on + strandat 4164.653 kb on - strandat 4164.653 kb on - strandat 4164.653 kb on - strandat 4164.690 kb on - strandat 4164.702 kb on + strandat 4164.703 kb on - strandat 4164.703 kb on - strandat 4164.729 kb on + strandat 4164.729 kb on + strandat 4164.730 kb on - strandat 4164.730 kb on - strandat 4164.730 kb on - strandat 4164.734 kb on + strandat 4164.734 kb on + strandat 4164.734 kb on + strandat 4164.735 kb on - strandat 4164.735 kb on - strandat 4164.766 kb on - strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.824 kb on + strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.825 kb on - strand, within Sama_3532at 4164.828 kb on + strand, within Sama_3532at 4164.828 kb on + strand, within Sama_3532at 4164.828 kb on + strand, within Sama_3532at 4164.828 kb on + strand, within Sama_3532at 4164.828 kb on + strand, within Sama_3532at 4164.828 kb on + strand, within Sama_3532at 4164.829 kb on - strand, within Sama_3532at 4164.829 kb on - strand, within Sama_3532at 4164.829 kb on - strand, within Sama_3532at 4164.829 kb on - strand, within Sama_3532at 4164.829 kb on - strand, within Sama_3532at 4164.829 kb on - strand, within Sama_3532at 4164.917 kb on + strand, within Sama_3532at 4164.917 kb on + strand, within Sama_3532at 4164.917 kb on + strand, within Sama_3532at 4164.917 kb on + strand, within Sama_3532at 4164.918 kb on - strand, within Sama_3532at 4164.918 kb on - strand, within Sama_3532at 4164.918 kb on - strand, within Sama_3532at 4164.965 kb on + strand, within Sama_3532at 4164.966 kb on - strand, within Sama_3532at 4165.052 kb on + strandat 4165.052 kb on + strandat 4165.053 kb on - strandat 4165.053 kb on - strandat 4165.053 kb on - strandat 4165.053 kb on - strandat 4165.092 kb on + strandat 4165.402 kb on + strand, within Sama_3533at 4165.618 kb on + strandat 4165.659 kb on + strandat 4165.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,163,784 + Sama_3531 0.22 -0.9
4,163,784 + Sama_3531 0.22 +0.7
4,163,785 - Sama_3531 0.22 +0.3
4,163,785 - Sama_3531 0.22 +1.4
4,163,785 - Sama_3531 0.22 -0.5
4,163,785 - Sama_3531 0.22 +0.1
4,163,785 - Sama_3531 0.22 +1.9
4,163,786 + Sama_3531 0.22 -0.1
4,163,786 + Sama_3531 0.22 +1.5
4,163,786 + Sama_3531 0.22 +0.5
4,163,786 + Sama_3531 0.22 +1.9
4,163,786 + Sama_3531 0.22 +0.2
4,163,786 + Sama_3531 0.22 -0.8
4,163,786 + Sama_3531 0.22 +1.4
4,163,786 + Sama_3531 0.22 -0.5
4,163,786 + Sama_3531 0.22 -0.4
4,163,786 + Sama_3531 0.22 +0.1
4,163,786 + Sama_3531 0.22 -0.4
4,163,787 - Sama_3531 0.22 +0.3
4,163,787 - Sama_3531 0.22 +0.4
4,163,787 - Sama_3531 0.22 +0.3
4,163,787 - Sama_3531 0.22 +0.6
4,163,787 - Sama_3531 0.22 +0.2
4,163,787 - Sama_3531 0.22 +0.3
4,163,787 - Sama_3531 0.22 +1.2
4,163,787 - Sama_3531 0.22 +0.2
4,163,787 - Sama_3531 0.22 -1.7
4,163,787 - Sama_3531 0.22 -0.5
4,163,787 - Sama_3531 0.22 -0.2
4,163,787 - Sama_3531 0.22 +0.8
4,163,787 - Sama_3531 0.22 -0.1
4,163,787 - Sama_3531 0.22 +0.9
4,163,787 - Sama_3531 0.22 +1.1
4,163,787 - Sama_3531 0.22 +0.4
4,163,787 - Sama_3531 0.22 +0.6
4,163,787 - Sama_3531 0.22 -1.4
4,163,914 - Sama_3531 0.33 +0.7
4,164,011 + Sama_3531 0.42 +0.7
4,164,012 - Sama_3531 0.42 -0.3
4,164,014 + Sama_3531 0.42 -0.7
4,164,014 + Sama_3531 0.42 -0.1
4,164,014 + Sama_3531 0.42 -0.4
4,164,014 + Sama_3531 0.42 +0.4
4,164,014 + Sama_3531 0.42 +2.8
4,164,015 - Sama_3531 0.42 +0.0
4,164,015 - Sama_3531 0.42 +0.4
4,164,015 - Sama_3531 0.42 +0.3
4,164,015 - Sama_3531 0.42 -0.2
4,164,067 + Sama_3531 0.47 +1.3
4,164,067 + Sama_3531 0.47 -0.1
4,164,068 - Sama_3531 0.47 +1.6
4,164,102 + Sama_3531 0.50 +0.5
4,164,102 + Sama_3531 0.50 +0.9
4,164,103 - Sama_3531 0.50 +1.6
4,164,103 - Sama_3531 0.50 +0.2
4,164,114 + Sama_3531 0.51 +0.6
4,164,114 + Sama_3531 0.51 -0.1
4,164,114 + Sama_3531 0.51 -0.1
4,164,114 + Sama_3531 0.51 +1.3
4,164,114 + Sama_3531 0.51 -1.5
4,164,114 + Sama_3531 0.51 -0.1
4,164,115 - Sama_3531 0.51 +0.4
4,164,115 - Sama_3531 0.51 -1.8
4,164,159 + Sama_3531 0.55 -2.2
4,164,159 + Sama_3531 0.55 -0.7
4,164,159 + Sama_3531 0.55 -1.7
4,164,159 + Sama_3531 0.55 +0.0
4,164,160 - Sama_3531 0.56 +0.4
4,164,160 - Sama_3531 0.56 +0.7
4,164,160 - Sama_3531 0.56 -2.4
4,164,160 - Sama_3531 0.56 +0.2
4,164,171 + Sama_3531 0.57 +0.2
4,164,172 - Sama_3531 0.57 +0.6
4,164,183 + Sama_3531 0.58 +0.2
4,164,183 + Sama_3531 0.58 +0.5
4,164,183 + Sama_3531 0.58 +0.3
4,164,183 + Sama_3531 0.58 -0.3
4,164,183 + Sama_3531 0.58 +0.1
4,164,183 + Sama_3531 0.58 +2.0
4,164,183 + Sama_3531 0.58 -0.1
4,164,183 + Sama_3531 0.58 -0.3
4,164,183 + Sama_3531 0.58 -0.5
4,164,183 + Sama_3531 0.58 -0.9
4,164,183 + Sama_3531 0.58 +0.0
4,164,183 + Sama_3531 0.58 -1.3
4,164,183 + Sama_3531 0.58 -0.9
4,164,183 + Sama_3531 0.58 -0.5
4,164,184 - Sama_3531 0.58 +0.2
4,164,184 - Sama_3531 0.58 -0.1
4,164,184 - Sama_3531 0.58 +0.3
4,164,184 - Sama_3531 0.58 +0.8
4,164,184 - Sama_3531 0.58 +0.7
4,164,184 - Sama_3531 0.58 +0.5
4,164,184 - Sama_3531 0.58 +0.4
4,164,184 - Sama_3531 0.58 -1.3
4,164,184 - Sama_3531 0.58 +1.5
4,164,184 - Sama_3531 0.58 +0.3
4,164,184 - Sama_3531 0.58 -0.3
4,164,184 - Sama_3531 0.58 +0.8
4,164,184 - Sama_3531 0.58 -0.0
4,164,184 - Sama_3531 0.58 +0.2
4,164,265 - Sama_3531 0.65 +0.8
4,164,407 + Sama_3531 0.78 +0.5
4,164,407 + Sama_3531 0.78 +0.2
4,164,408 - Sama_3531 0.78 -0.1
4,164,408 - Sama_3531 0.78 -0.2
4,164,408 - Sama_3531 0.78 +0.3
4,164,477 + Sama_3531 0.84 -1.6
4,164,477 + Sama_3531 0.84 -1.1
4,164,477 + Sama_3531 0.84 -1.6
4,164,477 + Sama_3531 0.84 -0.8
4,164,477 + Sama_3531 0.84 -1.8
4,164,477 + Sama_3531 0.84 +0.5
4,164,477 + Sama_3531 0.84 -0.9
4,164,477 + Sama_3531 0.84 -0.8
4,164,477 + Sama_3531 0.84 -1.7
4,164,477 + Sama_3531 0.84 -1.1
4,164,478 - Sama_3531 0.84 +0.5
4,164,478 - Sama_3531 0.84 +1.4
4,164,478 - Sama_3531 0.84 +0.5
4,164,605 + -1.7
4,164,605 + -2.4
4,164,605 + -1.0
4,164,605 + -1.9
4,164,605 + -2.1
4,164,606 - +0.1
4,164,606 - -0.2
4,164,606 - -0.3
4,164,652 + -0.9
4,164,652 + +0.8
4,164,652 + +0.3
4,164,652 + +1.7
4,164,652 + -0.2
4,164,653 - +2.9
4,164,653 - +3.9
4,164,653 - +3.8
4,164,690 - +3.5
4,164,702 + -2.3
4,164,703 - +4.1
4,164,703 - +4.3
4,164,729 + -2.8
4,164,729 + -1.6
4,164,730 - +3.7
4,164,730 - +3.5
4,164,730 - +4.5
4,164,734 + -1.1
4,164,734 + -2.2
4,164,734 + -1.8
4,164,735 - +3.9
4,164,735 - +3.8
4,164,766 - Sama_3532 0.12 +3.8
4,164,824 + Sama_3532 0.28 -2.6
4,164,824 + Sama_3532 0.28 -1.6
4,164,824 + Sama_3532 0.28 -2.6
4,164,824 + Sama_3532 0.28 -0.5
4,164,824 + Sama_3532 0.28 -0.5
4,164,824 + Sama_3532 0.28 -2.5
4,164,824 + Sama_3532 0.28 -0.3
4,164,825 - Sama_3532 0.28 +3.8
4,164,825 - Sama_3532 0.28 +4.4
4,164,825 - Sama_3532 0.28 +3.2
4,164,825 - Sama_3532 0.28 +4.7
4,164,825 - Sama_3532 0.28 +5.4
4,164,825 - Sama_3532 0.28 +4.0
4,164,825 - Sama_3532 0.28 +4.1
4,164,825 - Sama_3532 0.28 +3.6
4,164,828 + Sama_3532 0.29 -1.5
4,164,828 + Sama_3532 0.29 -3.1
4,164,828 + Sama_3532 0.29 -2.9
4,164,828 + Sama_3532 0.29 -1.9
4,164,828 + Sama_3532 0.29 -2.9
4,164,828 + Sama_3532 0.29 -0.9
4,164,829 - Sama_3532 0.29 +4.4
4,164,829 - Sama_3532 0.29 +3.4
4,164,829 - Sama_3532 0.29 +4.1
4,164,829 - Sama_3532 0.29 +4.2
4,164,829 - Sama_3532 0.29 +3.6
4,164,829 - Sama_3532 0.29 +3.4
4,164,917 + Sama_3532 0.53 -2.1
4,164,917 + Sama_3532 0.53 -1.9
4,164,917 + Sama_3532 0.53 -1.3
4,164,917 + Sama_3532 0.53 -1.3
4,164,918 - Sama_3532 0.53 +4.5
4,164,918 - Sama_3532 0.53 +3.4
4,164,918 - Sama_3532 0.53 +3.8
4,164,965 + Sama_3532 0.66 -1.6
4,164,966 - Sama_3532 0.67 +3.5
4,165,052 + -1.6
4,165,052 + -1.1
4,165,053 - +5.7
4,165,053 - +4.1
4,165,053 - +4.2
4,165,053 - +4.3
4,165,092 + -1.6
4,165,402 + Sama_3533 0.52 -0.6
4,165,618 + +1.1
4,165,659 + +1.9
4,165,659 + +2.7

Or see this region's nucleotide sequence