Strain Fitness in Shewanella amazonensis SB2B around Sama_3389

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
4,016,389	+		Sama_3388	0.59	-0.7
4,016,389	+		Sama_3388	0.59	-0.9
4,016,390	-		Sama_3388	0.59	-1.1
4,016,390	-		Sama_3388	0.59	-1.0
4,016,390	-		Sama_3388	0.59	+0.4
4,016,390	-		Sama_3388	0.59	-0.8
4,016,390	-		Sama_3388	0.59	+0.2
4,016,422	+		Sama_3388	0.61	+0.5
4,016,423	-		Sama_3388	0.61	-1.3
4,016,549	+		Sama_3388	0.66	+0.6
4,016,549	+		Sama_3388	0.66	-0.1
4,016,549	+		Sama_3388	0.66	-2.4
4,016,550	-		Sama_3388	0.66	-0.8
4,016,584	+		Sama_3388	0.67	+0.6
4,016,603	+		Sama_3388	0.68	-0.8
4,016,603	+		Sama_3388	0.68	+1.5
4,016,604	-		Sama_3388	0.68	-0.3
4,016,604	-		Sama_3388	0.68	-2.7
4,016,604	-		Sama_3388	0.68	+0.1
4,016,604	-		Sama_3388	0.68	-0.5
4,016,604	-		Sama_3388	0.68	+0.9
4,016,604	-		Sama_3388	0.68	-0.7
4,016,604	-		Sama_3388	0.68	+0.7
4,016,625	+		Sama_3388	0.69	+1.8
4,016,625	+		Sama_3388	0.69	+1.5
4,016,625	+		Sama_3388	0.69	-0.9
4,016,678	+		Sama_3388	0.71	-0.7
4,016,678	+		Sama_3388	0.71	+0.3
4,016,678	+		Sama_3388	0.71	-0.1
4,016,857	+		Sama_3388	0.79	-2.1
4,016,857	+		Sama_3388	0.79	-0.4
4,016,858	-		Sama_3388	0.79	-1.1
4,016,886	+		Sama_3388	0.80	+0.9
4,016,886	+		Sama_3388	0.80	-1.0
4,016,887	-		Sama_3388	0.80	-1.8
4,016,899	+		Sama_3388	0.81	+0.7
4,016,933	+		Sama_3388	0.82	-0.4
4,016,974	+		Sama_3388	0.84	-2.1
4,016,974	+		Sama_3388	0.84	-1.5
4,016,974	+		Sama_3388	0.84	-2.4
4,016,975	-		Sama_3388	0.84	-0.7
4,016,975	-		Sama_3388	0.84	+1.1
4,017,099	+		Sama_3388	0.89	-0.8
4,017,100	-		Sama_3388	0.89	-0.9
4,017,100	-		Sama_3388	0.89	-0.3
4,017,127	-				-0.8
4,017,146	+				-1.8
4,017,147	-				-0.5
4,017,147	-				-1.6
4,017,147	-				+1.1
4,017,193	-				-0.8
4,017,196	+				-0.7
4,017,196	+				-3.1
4,017,196	+				-1.7
4,017,196	+				+0.5
4,017,196	+				+0.2
4,017,197	-				+0.5
4,017,197	-				-2.9
4,017,197	-				-0.5
4,017,259	+				-0.3
4,017,273	+				+0.4
4,017,274	-				-1.7
4,017,274	-				-0.2
4,017,274	-				-1.3
4,017,278	+				-0.9
4,017,278	+				-1.8
4,017,313	+				-0.8
4,017,362	+				-0.1
4,017,362	+				+0.2
4,017,362	+				-0.5
4,017,362	+				-0.0
4,017,363	-				-0.6
4,017,363	-				+0.2
4,017,363	-				-0.5
4,017,379	+				-1.9
4,017,379	+				-0.4
4,017,379	+				-0.2
4,017,380	-				+1.3
4,017,380	-				-0.3
4,017,380	-				+0.7
4,017,380	-				+1.2
4,017,415	+				-0.7
4,017,416	-				+0.6
4,017,416	-				-1.7
4,017,416	-				-1.0
4,017,417	+				+1.6
4,017,418	-				-0.7
4,017,418	-				-0.8
4,017,418	-				+0.8
4,017,418	-				+0.9
4,017,439	+				-0.4
4,017,439	+				+0.2
4,017,439	+				+0.6
4,017,440	-				+0.7
4,017,635	+		Sama_3389	0.21	+1.5
4,017,635	+		Sama_3389	0.21	-2.3
4,017,635	+		Sama_3389	0.21	+0.8
4,017,636	-		Sama_3389	0.21	-0.2
4,017,636	-		Sama_3389	0.21	+0.5
4,017,658	+		Sama_3389	0.23	-0.9
4,017,659	-		Sama_3389	0.23	-1.5
4,017,664	+		Sama_3389	0.23	-0.1
4,017,665	-		Sama_3389	0.24	-0.1
4,017,766	+		Sama_3389	0.31	-0.9
4,017,766	+		Sama_3389	0.31	+1.0
4,017,766	+		Sama_3389	0.31	-0.0
4,017,767	-		Sama_3389	0.32	+0.2
4,017,780	+		Sama_3389	0.33	+0.2
4,017,780	+		Sama_3389	0.33	+0.3
4,017,780	+		Sama_3389	0.33	+0.1
4,017,781	-		Sama_3389	0.33	+0.1
4,017,781	-		Sama_3389	0.33	-1.0
4,017,781	-		Sama_3389	0.33	-1.2
4,017,781	-		Sama_3389	0.33	-0.2
4,017,834	-		Sama_3389	0.37	-1.6
4,017,853	+		Sama_3389	0.38	-0.8
4,017,854	-		Sama_3389	0.38	-0.2
4,017,854	-		Sama_3389	0.38	+0.0
4,017,854	-		Sama_3389	0.38	+0.5
4,017,943	+		Sama_3389	0.45	+0.3
4,017,943	+		Sama_3389	0.45	-0.1
4,017,985	+		Sama_3389	0.49	+1.4
4,017,985	+		Sama_3389	0.49	+0.5
4,017,985	+		Sama_3389	0.49	+0.4
4,017,985	+		Sama_3389	0.49	-1.1
4,017,985	+		Sama_3389	0.49	-0.5
4,017,986	-		Sama_3389	0.49	+0.1
4,017,986	-		Sama_3389	0.49	+0.3
4,017,986	-		Sama_3389	0.49	+0.4
4,017,988	+		Sama_3389	0.49	+0.7
4,017,988	+		Sama_3389	0.49	+1.8
4,017,988	+		Sama_3389	0.49	+0.8
4,017,989	-		Sama_3389	0.49	+0.3
4,017,989	-		Sama_3389	0.49	+0.1
4,017,989	-		Sama_3389	0.49	-1.2
4,017,989	-		Sama_3389	0.49	+0.9
4,017,989	-		Sama_3389	0.49	+0.0
4,017,989	-		Sama_3389	0.49	-0.3
4,017,999	+		Sama_3389	0.50	-0.1
4,018,000	-		Sama_3389	0.50	+0.1
4,018,000	-		Sama_3389	0.50	+0.2
4,018,039	+		Sama_3389	0.53	-0.5
4,018,039	+		Sama_3389	0.53	+0.1
4,018,039	+		Sama_3389	0.53	-1.0
4,018,159	+		Sama_3389	0.62	-0.2
4,018,182	+		Sama_3389	0.64	+0.1
4,018,182	+		Sama_3389	0.64	+0.4
4,018,183	-		Sama_3389	0.64	+0.7
4,018,183	-		Sama_3389	0.64	-0.1
4,018,183	-		Sama_3389	0.64	+0.2
4,018,183	-		Sama_3389	0.64	+0.9
4,018,183	-		Sama_3389	0.64	-0.1
4,018,207	+		Sama_3389	0.66	-0.0
4,018,207	+		Sama_3389	0.66	-0.5
4,018,207	+		Sama_3389	0.66	-0.3
4,018,208	-		Sama_3389	0.66	-2.4
4,018,214	+		Sama_3389	0.67	-0.4
4,018,227	+		Sama_3389	0.68	-0.6
4,018,227	+		Sama_3389	0.68	-1.3
4,018,227	+		Sama_3389	0.68	-0.6
4,018,227	+		Sama_3389	0.68	+1.1
4,018,227	+		Sama_3389	0.68	+1.2
4,018,227	+		Sama_3389	0.68	-0.3
4,018,227	+		Sama_3389	0.68	-0.8
4,018,227	+		Sama_3389	0.68	-1.0
4,018,227	+		Sama_3389	0.68	-0.8
4,018,228	-		Sama_3389	0.68	+0.5
4,018,228	-		Sama_3389	0.68	+0.0
4,018,228	-		Sama_3389	0.68	+0.3
4,018,228	-		Sama_3389	0.68	+0.0
4,018,228	-		Sama_3389	0.68	+0.5
4,018,228	-		Sama_3389	0.68	-1.5
4,018,228	-		Sama_3389	0.68	-0.0
4,018,391	+		Sama_3389	0.80	-0.3
4,018,391	+		Sama_3389	0.80	-2.9
4,018,392	-		Sama_3389	0.81	-0.1
4,018,433	+		Sama_3389	0.84	+0.1
4,018,433	+		Sama_3389	0.84	+0.2
4,018,433	+		Sama_3389	0.84	-0.3
4,018,433	+		Sama_3389	0.84	+0.3
4,018,433	+		Sama_3389	0.84	+0.7
4,018,433	+		Sama_3389	0.84	-0.2
4,018,433	+		Sama_3389	0.84	+0.3
4,018,433	+		Sama_3389	0.84	+2.5
4,018,433	+		Sama_3389	0.84	+0.5
4,018,433	+		Sama_3389	0.84	-0.4
4,018,433	+		Sama_3389	0.84	-1.8
4,018,433	+		Sama_3389	0.84	+0.2
4,018,434	-		Sama_3389	0.84	-0.8
4,018,434	-		Sama_3389	0.84	-0.5
4,018,434	-		Sama_3389	0.84	-1.5
4,018,434	-		Sama_3389	0.84	-1.1
4,018,434	-		Sama_3389	0.84	-1.8
4,018,434	-		Sama_3389	0.84	-0.9
4,018,434	-		Sama_3389	0.84	-0.1
4,018,434	-		Sama_3389	0.84	+0.9
4,018,434	-		Sama_3389	0.84	+1.3
4,018,585	+				+0.5
4,018,585	+				+0.9
4,018,586	-				-0.1
4,018,586	-				-0.1
4,018,586	-				-1.3
4,018,586	-				+0.5
4,018,593	+				-0.4
4,018,593	+				+0.3
4,018,593	+				+0.9
4,018,594	-				-0.1
4,018,594	-				+0.2
4,018,594	-				-0.8
4,018,637	+				-1.3
4,018,637	+				-0.0
4,018,668	-				-0.1
4,018,700	+				-1.4
4,018,700	+				-1.5
4,018,700	+				-2.2
4,018,701	-				-1.1
4,018,744	+		Sama_3390	0.16	-3.8
4,018,744	+		Sama_3390	0.16	-1.5
4,018,744	+		Sama_3390	0.16	-0.9
4,018,744	+		Sama_3390	0.16	-2.6
4,018,744	+		Sama_3390	0.16	+0.5
4,018,745	-		Sama_3390	0.16	-3.2
4,018,745	-		Sama_3390	0.16	-0.7
4,018,745	-		Sama_3390	0.16	-1.9
4,018,898	+		Sama_3390	0.39	+0.1
4,018,898	+		Sama_3390	0.39	-1.8
4,018,899	-		Sama_3390	0.39	-1.7
4,018,928	+		Sama_3390	0.43	-0.7
4,018,928	+		Sama_3390	0.43	+0.5
4,018,967	+		Sama_3390	0.49	+0.3
4,018,967	+		Sama_3390	0.49	-0.6
4,018,968	-		Sama_3390	0.49	-0.8
4,018,968	-		Sama_3390	0.49	-1.5
4,019,004	-		Sama_3390	0.55	-1.5
4,019,004	-		Sama_3390	0.55	-0.1
4,019,004	-		Sama_3390	0.55	-1.2
4,019,004	-		Sama_3390	0.55	+0.1
4,019,004	-		Sama_3390	0.55	-1.3
4,019,004	-		Sama_3390	0.55	-1.1
4,019,027	+		Sama_3390	0.58	-1.3
4,019,028	-		Sama_3390	0.58	+0.1
4,019,028	-		Sama_3390	0.58	-2.3
4,019,071	+		Sama_3390	0.65	+0.9
4,019,072	-		Sama_3390	0.65	-0.5
4,019,094	+		Sama_3390	0.68	-2.5
4,019,094	+		Sama_3390	0.68	-1.4
4,019,094	+		Sama_3390	0.68	-0.5
4,019,094	+		Sama_3390	0.68	-1.3
4,019,094	+		Sama_3390	0.68	-1.3
4,019,094	+		Sama_3390	0.68	-3.3
4,019,094	+		Sama_3390	0.68	-2.7
4,019,095	-		Sama_3390	0.68	-0.1
4,019,095	-		Sama_3390	0.68	-0.8
4,019,095	-		Sama_3390	0.68	-0.5
4,019,095	-		Sama_3390	0.68	-1.0
4,019,095	-		Sama_3390	0.68	-1.2
4,019,095	-		Sama_3390	0.68	+0.3
4,019,098	+		Sama_3390	0.69	-2.2
4,019,098	+		Sama_3390	0.69	-1.1
4,019,207	+		Sama_3390	0.85	-2.0
4,019,207	+		Sama_3390	0.85	-1.2
4,019,208	-		Sama_3390	0.85	-2.5
4,019,208	-		Sama_3390	0.85	-0.9
4,019,208	-		Sama_3390	0.85	-2.7
4,019,208	-		Sama_3390	0.85	+0.1
4,019,221	+		Sama_3390	0.87	-2.2
4,019,221	+		Sama_3390	0.87	-1.4
4,019,221	+		Sama_3390	0.87	-2.5
4,019,221	+		Sama_3390	0.87	-1.7
4,019,222	-		Sama_3390	0.87	-0.9
4,019,222	-		Sama_3390	0.87	-2.9
4,019,222	-		Sama_3390	0.87	-0.4
4,019,222	-		Sama_3390	0.87	-1.5
4,019,222	-		Sama_3390	0.87	-1.2
4,019,222	-		Sama_3390	0.87	-0.5
4,019,251	+				-1.5
4,019,252	+				-1.4
4,019,252	+				-0.5
4,019,252	+				-2.1
4,019,253	-				-2.0
4,019,253	-				-0.1
4,019,253	-				-1.7
4,019,255	+				-2.3
4,019,256	-				-0.5
4,019,256	-				-0.1
4,019,256	-				-0.3
4,019,256	-				-0.3
4,019,256	-				-0.3
4,019,256	-				-0.2
4,019,293	-				-1.5
4,019,332	+				-0.8
4,019,332	+				+0.3
4,019,333	-				-0.3
4,019,333	-				-0.1
4,019,364	-				-0.5
4,019,364	-				-0.7
4,019,384	+				-1.0
4,019,384	+				+0.6
4,019,385	-				-0.8
4,019,385	-				+0.4
4,019,385	-				-0.8
4,019,385	-				-1.7
4,019,516	+		Sama_3391	0.14	+0.2
4,019,516	+		Sama_3391	0.14	-0.5
4,019,516	+		Sama_3391	0.14	-0.5
4,019,517	-		Sama_3391	0.14	-1.9
4,019,517	-		Sama_3391	0.14	-0.7
4,019,517	-		Sama_3391	0.14	-0.2
4,019,585	+		Sama_3391	0.19	-0.8
4,019,585	+		Sama_3391	0.19	-0.6
4,019,585	+		Sama_3391	0.19	+0.3
4,019,586	-		Sama_3391	0.19	+0.2