Strain Fitness in Shewanella amazonensis SB2B around Sama_3387

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
4,013,299	-		Sama_3385	0.71	-0.6
4,013,299	-		Sama_3385	0.71	-0.9
4,013,385	-		Sama_3385	0.77	-1.3
4,013,418	+		Sama_3385	0.79	-1.3
4,013,418	+		Sama_3385	0.79	+0.4
4,013,445	+		Sama_3385	0.81	-2.9
4,013,446	-		Sama_3385	0.81	-0.5
4,013,565	+		Sama_3385	0.88	+1.1
4,013,826	+		Sama_3386	0.19	-0.2
4,013,826	+		Sama_3386	0.19	-0.0
4,013,826	+		Sama_3386	0.19	-1.8
4,013,826	+		Sama_3386	0.19	-0.1
4,013,826	+		Sama_3386	0.19	-1.9
4,013,827	-		Sama_3386	0.20	-0.9
4,013,827	-		Sama_3386	0.20	-0.2
4,013,827	-		Sama_3386	0.20	-0.4
4,013,827	-		Sama_3386	0.20	-0.9
4,013,827	-		Sama_3386	0.20	+0.3
4,013,827	-		Sama_3386	0.20	+0.2
4,013,835	+		Sama_3386	0.22	+0.5
4,013,835	+		Sama_3386	0.22	-0.7
4,013,836	-		Sama_3386	0.22	-2.8
4,013,836	-		Sama_3386	0.22	+0.6
4,013,836	-		Sama_3386	0.22	+0.0
4,013,877	+		Sama_3386	0.31	-0.1
4,013,877	+		Sama_3386	0.31	-0.9
4,013,877	+		Sama_3386	0.31	+0.2
4,013,877	+		Sama_3386	0.31	-0.6
4,013,877	+		Sama_3386	0.31	+0.1
4,013,877	+		Sama_3386	0.31	+0.6
4,013,877	+		Sama_3386	0.31	-0.9
4,013,878	-		Sama_3386	0.31	+0.5
4,013,878	-		Sama_3386	0.31	-1.1
4,013,878	-		Sama_3386	0.31	-1.8
4,013,878	-		Sama_3386	0.31	-0.4
4,013,883	+		Sama_3386	0.33	-1.0
4,013,883	+		Sama_3386	0.33	-0.9
4,013,884	-		Sama_3386	0.33	-1.6
4,013,940	+		Sama_3386	0.46	+0.7
4,013,940	+		Sama_3386	0.46	-1.6
4,013,940	+		Sama_3386	0.46	-0.5
4,013,940	+		Sama_3386	0.46	+1.0
4,013,941	-		Sama_3386	0.46	+2.0
4,013,941	-		Sama_3386	0.46	+1.0
4,013,941	-		Sama_3386	0.46	-1.7
4,013,941	-		Sama_3386	0.46	-0.1
4,014,022	-		Sama_3386	0.65	-0.4
4,014,022	-		Sama_3386	0.65	-3.6
4,014,066	+		Sama_3386	0.75	-0.0
4,014,066	+		Sama_3386	0.75	-2.0
4,014,095	+		Sama_3386	0.82	-1.7
4,014,095	+		Sama_3386	0.82	-1.2
4,014,095	+		Sama_3386	0.82	+0.2
4,014,095	+		Sama_3386	0.82	-1.7
4,014,095	+		Sama_3386	0.82	+2.4
4,014,096	-		Sama_3386	0.82	-1.1
4,014,096	-		Sama_3386	0.82	-0.1
4,014,096	-		Sama_3386	0.82	-0.1
4,014,096	-		Sama_3386	0.82	+0.5
4,014,096	-		Sama_3386	0.82	-0.3
4,014,096	-		Sama_3386	0.82	-1.2
4,014,127	+		Sama_3386	0.89	-1.2
4,014,127	+		Sama_3386	0.89	-0.8
4,014,127	+		Sama_3386	0.89	+0.5
4,014,128	-		Sama_3386	0.89	+0.4
4,014,208	+				+0.0
4,014,208	+				+0.2
4,014,208	+				-0.6
4,014,209	-				-1.7
4,014,209	-				-0.4
4,014,209	-				+0.7
4,014,209	-				+0.2
4,014,213	+				+0.8
4,014,213	+				-0.5
4,014,213	+				-0.2
4,014,213	+				+0.7
4,014,213	+				-0.5
4,014,214	-				-0.9
4,014,214	-				-0.3
4,014,214	-				+1.1
4,014,214	-				+0.2
4,014,214	-				-1.0
4,014,214	-				-1.1
4,014,214	-				-0.3
4,014,214	-				-1.9
4,014,214	-				-3.1
4,014,214	-				+0.5
4,014,214	-				-0.8
4,014,214	-				-0.2
4,014,214	-				-0.2
4,014,215	+				-1.4
4,014,215	+				-0.8
4,014,215	+				-0.3
4,014,215	+				+0.4
4,014,215	+				-0.4
4,014,215	+				-0.9
4,014,215	+				+0.7
4,014,215	+				-0.5
4,014,215	+				+0.5
4,014,215	+				-0.1
4,014,215	+				-0.7
4,014,216	-				-0.4
4,014,216	-				-0.6
4,014,216	-				-1.4
4,014,216	-				-1.1
4,014,216	-				+0.7
4,014,216	-				-0.7
4,014,216	-				+1.4
4,014,216	-				+0.8
4,014,216	-				-0.7
4,014,216	-				+0.8
4,014,223	+				-1.7
4,014,223	+				-0.1
4,014,223	+				+0.1
4,014,223	+				-1.3
4,014,223	+				+0.3
4,014,223	+				-0.3
4,014,223	+				-0.4
4,014,223	+				-0.4
4,014,224	-				-1.6
4,014,224	-				+0.5
4,014,224	-				-1.1
4,014,224	-				-1.1
4,014,224	-				-1.2
4,014,224	-				-1.5
4,014,224	-				+0.0
4,014,227	+				-1.7
4,014,227	+				-1.1
4,014,227	+				+1.3
4,014,227	+				-0.8
4,014,227	+				-0.5
4,014,227	+				-1.3
4,014,227	+				+1.7
4,014,227	+				-1.6
4,014,227	+				+0.1
4,014,228	-				-0.1
4,014,228	-				-1.7
4,014,228	-				-0.5
4,014,228	-				-0.1
4,014,228	-				+0.8
4,014,228	-				-0.1
4,014,228	-				-0.4
4,014,260	-				-2.0
4,014,269	+				-2.2
4,014,269	+				-1.1
4,014,269	+				-1.2
4,014,269	+				-2.6
4,014,269	+				-3.2
4,014,269	+				-1.3
4,014,269	+				-1.5
4,014,269	+				-1.1
4,014,269	+				-1.6
4,014,269	+				-1.9
4,014,269	+				-1.7
4,014,269	+				-0.1
4,014,269	+				-2.7
4,014,269	+				-2.4
4,014,269	+				-2.2
4,014,269	+				-1.9
4,014,269	+				-1.9
4,014,269	+				-3.1
4,014,270	-				-0.8
4,014,270	-				-0.4
4,014,270	-				-0.5
4,014,270	-				-1.9
4,014,270	-				+1.8
4,014,308	-		Sama_3387	0.11	-1.0
4,014,320	+		Sama_3387	0.13	-1.7
4,014,320	+		Sama_3387	0.13	-1.3
4,014,424	+		Sama_3387	0.27	-1.8
4,014,424	+		Sama_3387	0.27	-0.6
4,014,511	+		Sama_3387	0.39	-0.5
4,014,521	-		Sama_3387	0.40	+0.4
4,014,599	+		Sama_3387	0.51	-3.0
4,014,599	+		Sama_3387	0.51	+0.7
4,014,600	-		Sama_3387	0.51	-0.3
4,014,600	-		Sama_3387	0.51	+3.1
4,014,604	+		Sama_3387	0.51	-0.5
4,014,641	+		Sama_3387	0.56	-1.9
4,014,642	-		Sama_3387	0.57	-1.1
4,014,728	+		Sama_3387	0.68	-1.8
4,014,730	+		Sama_3387	0.69	-2.8
4,014,830	+		Sama_3387	0.82	-2.3
4,014,830	+		Sama_3387	0.82	-1.7
4,014,830	+		Sama_3387	0.82	-1.1
4,014,849	-		Sama_3387	0.85	-0.7
4,014,849	-		Sama_3387	0.85	-1.3
4,014,958	-				-2.4
4,014,958	-				-0.5
4,014,963	-				-1.5
4,014,963	-				+1.1
4,014,963	-				-0.5
4,014,994	+				+0.1
4,014,994	+				+0.1
4,015,035	+				-0.2
4,015,035	+				-2.4
4,015,075	+				+1.1
4,015,075	+				-1.6
4,015,075	+				-1.8
4,015,075	+				-2.6
4,015,076	-				-1.8
4,015,076	-				-0.1
4,015,199	+				-1.7
4,015,199	+				-1.0
4,015,200	-				+0.4
4,015,328	+		Sama_3388	0.15	-0.5
4,015,337	+		Sama_3388	0.15	-1.3
4,015,407	+		Sama_3388	0.18	+0.0
4,015,407	+		Sama_3388	0.18	-1.3
4,015,407	+		Sama_3388	0.18	+0.5
4,015,407	+		Sama_3388	0.18	-0.8
4,015,407	+		Sama_3388	0.18	-2.3
4,015,408	-		Sama_3388	0.18	-0.7
4,015,408	-		Sama_3388	0.18	-1.0
4,015,408	-		Sama_3388	0.18	-1.1
4,015,408	-		Sama_3388	0.18	-1.0
4,015,408	-		Sama_3388	0.18	-0.1
4,015,437	-		Sama_3388	0.20	+0.8
4,015,468	+		Sama_3388	0.21	-1.3
4,015,468	+		Sama_3388	0.21	+0.3
4,015,468	+		Sama_3388	0.21	+0.6
4,015,468	+		Sama_3388	0.21	-0.3
4,015,468	+		Sama_3388	0.21	-1.3
4,015,469	-		Sama_3388	0.21	-1.5
4,015,488	+		Sama_3388	0.22	-1.1
4,015,488	+		Sama_3388	0.22	-0.9
4,015,488	+		Sama_3388	0.22	-2.4
4,015,489	-		Sama_3388	0.22	-1.5
4,015,489	-		Sama_3388	0.22	-2.3
4,015,489	-		Sama_3388	0.22	-0.5
4,015,615	-		Sama_3388	0.27	-1.9
4,015,615	-		Sama_3388	0.27	+0.2
4,015,674	+		Sama_3388	0.30	-0.3
4,015,675	-		Sama_3388	0.30	-1.1
4,015,675	-		Sama_3388	0.30	-1.9
4,015,675	-		Sama_3388	0.30	+0.5
4,015,758	+		Sama_3388	0.33	-0.8
4,015,758	+		Sama_3388	0.33	+0.5
4,015,759	-		Sama_3388	0.33	-1.5
4,015,794	+		Sama_3388	0.35	-2.1
4,015,795	-		Sama_3388	0.35	-0.3
4,015,795	-		Sama_3388	0.35	-1.5
4,015,795	-		Sama_3388	0.35	-0.1
4,015,864	+		Sama_3388	0.37	-2.1
4,015,864	+		Sama_3388	0.37	-2.8
4,015,864	+		Sama_3388	0.37	+0.5
4,015,864	+		Sama_3388	0.37	+0.5
4,015,865	-		Sama_3388	0.38	-1.3
4,015,865	-		Sama_3388	0.38	-0.4
4,015,865	-		Sama_3388	0.38	-0.9
4,015,865	-		Sama_3388	0.38	+1.2
4,015,908	+		Sama_3388	0.39	-1.5
4,015,908	+		Sama_3388	0.39	-2.2
4,015,908	+		Sama_3388	0.39	+0.3
4,015,908	+		Sama_3388	0.39	-0.4
4,015,909	-		Sama_3388	0.39	-0.8
4,015,909	-		Sama_3388	0.39	-1.5
4,015,909	-		Sama_3388	0.39	-1.7
4,015,909	-		Sama_3388	0.39	+0.7
4,015,909	-		Sama_3388	0.39	-2.2