Strain Fitness in Shewanella amazonensis SB2B around Sama_3268

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,879,677	-				-0.2
3,879,714	+				+1.0
3,879,714	+				+0.5
3,879,714	+				+0.6
3,879,714	+				+2.2
3,879,715	-				-0.0
3,879,715	-				+0.3
3,879,715	-				+0.9
3,879,715	-				+0.3
3,879,731	+				+1.6
3,879,731	+				-0.7
3,879,732	-				-0.8
3,879,774	+				+1.2
3,879,798	+				+1.9
3,879,811	+				+1.7
3,879,811	+				+1.8
3,879,812	-				-0.1
3,879,812	-				-2.9
3,879,820	+				+0.6
3,879,820	+				+0.5
3,879,820	+				+0.3
3,879,820	+				+2.0
3,879,932	+		Sama_3267	0.21	+1.6
3,879,932	+		Sama_3267	0.21	+1.8
3,879,932	+		Sama_3267	0.21	+0.2
3,879,933	-		Sama_3267	0.21	+1.2
3,879,933	-		Sama_3267	0.21	-0.8
3,880,024	+		Sama_3267	0.37	+0.4
3,880,025	-		Sama_3267	0.38	-0.8
3,880,118	+		Sama_3267	0.54	+0.3
3,880,118	+		Sama_3267	0.54	-0.1
3,880,118	+		Sama_3267	0.54	+2.7
3,880,118	+		Sama_3267	0.54	+1.8
3,880,118	+		Sama_3267	0.54	+1.6
3,880,191	+		Sama_3267	0.67	+3.2
3,880,191	+		Sama_3267	0.67	+2.2
3,880,338	+				-0.3
3,880,338	+				+1.4
3,880,338	+				+0.4
3,880,338	+				-0.6
3,880,338	+				-1.8
3,880,377	-				-0.8
3,880,389	+				-1.6
3,880,390	-				-2.1
3,880,390	-				-1.2
3,880,426	+				-2.9
3,880,427	-				-0.3
3,880,427	-				-2.2
3,880,460	+				-0.7
3,880,460	+				-1.2
3,880,460	+				-0.8
3,880,472	-				-1.3
3,880,502	+				-0.5
3,880,502	+				-2.2
3,880,503	-				-1.5
3,880,640	+		Sama_3268	0.22	-0.5
3,880,641	-		Sama_3268	0.22	-0.3
3,880,665	-		Sama_3268	0.24	-2.9
3,880,697	+		Sama_3268	0.27	+0.7
3,880,720	+		Sama_3268	0.29	+0.1
3,880,720	+		Sama_3268	0.29	-1.8
3,880,720	+		Sama_3268	0.29	-0.7
3,880,721	-		Sama_3268	0.29	-1.0
3,880,721	-		Sama_3268	0.29	-0.6
3,880,782	+		Sama_3268	0.35	+0.5
3,880,782	+		Sama_3268	0.35	-1.2
3,880,782	+		Sama_3268	0.35	-1.9
3,880,783	-		Sama_3268	0.35	+0.2
3,880,783	-		Sama_3268	0.35	-0.2
3,880,833	+		Sama_3268	0.39	-0.0
3,880,833	+		Sama_3268	0.39	-1.0
3,880,833	+		Sama_3268	0.39	-1.4
3,880,834	-		Sama_3268	0.39	-0.7
3,880,834	-		Sama_3268	0.39	-1.2
3,880,834	-		Sama_3268	0.39	+0.3
3,880,834	-		Sama_3268	0.39	-0.7
3,880,834	-		Sama_3268	0.39	-2.8
3,880,834	-		Sama_3268	0.39	-2.3
3,880,834	-		Sama_3268	0.39	-1.6
3,880,876	+		Sama_3268	0.43	-0.9
3,880,876	+		Sama_3268	0.43	-1.9
3,880,876	+		Sama_3268	0.43	-0.1
3,880,876	+		Sama_3268	0.43	-0.8
3,880,876	+		Sama_3268	0.43	-0.3
3,880,876	+		Sama_3268	0.43	-1.0
3,880,876	+		Sama_3268	0.43	+0.2
3,880,876	+		Sama_3268	0.43	+0.7
3,880,877	-		Sama_3268	0.43	-1.1
3,880,877	-		Sama_3268	0.43	-0.4
3,880,877	-		Sama_3268	0.43	-0.3
3,880,877	-		Sama_3268	0.43	-0.5
3,880,877	-		Sama_3268	0.43	-1.5
3,880,877	-		Sama_3268	0.43	-3.3
3,880,877	-		Sama_3268	0.43	-0.5
3,880,877	-		Sama_3268	0.43	-0.9
3,880,944	+		Sama_3268	0.49	+0.3
3,880,945	-		Sama_3268	0.49	-1.0
3,880,945	-		Sama_3268	0.49	-0.1
3,880,945	-		Sama_3268	0.49	-1.1
3,880,966	+		Sama_3268	0.51	-2.7
3,880,966	+		Sama_3268	0.51	-0.8
3,880,966	+		Sama_3268	0.51	-1.1
3,880,967	-		Sama_3268	0.51	-1.1
3,880,967	-		Sama_3268	0.51	-0.1
3,880,967	-		Sama_3268	0.51	-0.6
3,880,967	-		Sama_3268	0.51	-2.2
3,880,967	-		Sama_3268	0.51	-1.7
3,880,967	-		Sama_3268	0.51	-1.4
3,880,967	-		Sama_3268	0.51	-0.6
3,881,026	+		Sama_3268	0.56	-1.9
3,881,027	-		Sama_3268	0.56	-1.1
3,881,061	+		Sama_3268	0.60	-1.3
3,881,061	+		Sama_3268	0.60	-1.6
3,881,061	+		Sama_3268	0.60	-0.7
3,881,061	+		Sama_3268	0.60	-0.5
3,881,061	+		Sama_3268	0.60	-0.5
3,881,061	+		Sama_3268	0.60	-0.0
3,881,061	+		Sama_3268	0.60	+0.9
3,881,061	+		Sama_3268	0.60	-0.2
3,881,061	+		Sama_3268	0.60	-0.4
3,881,061	+		Sama_3268	0.60	-1.3
3,881,061	+		Sama_3268	0.60	-1.4
3,881,062	-		Sama_3268	0.60	-0.5
3,881,062	-		Sama_3268	0.60	-0.9
3,881,062	-		Sama_3268	0.60	-0.1
3,881,062	-		Sama_3268	0.60	+1.5
3,881,062	-		Sama_3268	0.60	-0.4
3,881,062	-		Sama_3268	0.60	-0.5
3,881,062	-		Sama_3268	0.60	+0.9
3,881,062	-		Sama_3268	0.60	+1.3
3,881,074	-		Sama_3268	0.61	-0.7
3,881,128	-		Sama_3268	0.66	-1.1
3,881,128	-		Sama_3268	0.66	-1.8
3,881,193	-		Sama_3268	0.71	-0.1
3,881,193	-		Sama_3268	0.71	+0.2
3,881,193	-		Sama_3268	0.71	-0.0
3,881,193	-		Sama_3268	0.71	-2.9
3,881,193	-		Sama_3268	0.71	-0.2
3,881,223	-		Sama_3268	0.74	+0.3
3,881,262	-		Sama_3268	0.77	-1.1
3,881,274	+		Sama_3268	0.79	-1.0
3,881,274	+		Sama_3268	0.79	-1.9
3,881,275	-		Sama_3268	0.79	-3.1
3,881,275	-		Sama_3268	0.79	-1.7
3,881,290	-		Sama_3268	0.80	-2.6
3,881,329	+		Sama_3268	0.83	-2.5
3,881,330	-		Sama_3268	0.84	-1.5
3,881,357	-		Sama_3268	0.86	-2.7
3,881,383	+		Sama_3268	0.88	-1.0
3,881,383	+		Sama_3268	0.88	-1.9
3,881,511	+				-0.4
3,881,511	+				+0.8
3,881,511	+				+1.9
3,881,511	+				-0.4
3,881,511	+				-0.3
3,881,512	-				+2.1
3,881,534	+				-0.5
3,881,535	-				-0.5
3,881,535	-				-2.3
3,881,546	+				-0.8
3,881,547	-				-1.3
3,881,585	+				-0.7
3,881,585	+				+0.2
3,881,676	+				-0.4
3,881,676	+				+0.7
3,881,676	+				-1.4
3,881,676	+				-0.1
3,881,677	-				-1.5
3,881,677	-				-0.3
3,881,677	-				-1.3
3,881,677	-				-0.1
3,881,677	-				-1.4
3,881,679	+				+1.5
3,881,679	+				-1.7
3,881,679	+				-0.3
3,881,679	+				+0.1
3,881,679	+				-0.3
3,881,680	-				-0.7
3,881,680	-				-1.0
3,881,680	-				+0.2
3,881,680	-				+0.5
3,881,711	+				-2.7
3,881,712	-				+0.5
3,881,712	-				-2.0
3,881,714	+				-2.8
3,881,714	+				-1.1
3,881,714	+				+0.4
3,881,714	+				-0.7
3,881,715	-				-1.4
3,881,715	-				-2.7
3,881,715	-				-1.3
3,881,763	-				-0.7
3,881,803	+				-0.3
3,881,803	+				+0.5
3,881,803	+				-0.5
3,881,803	+				-0.8
3,881,803	+				+0.2
3,881,803	+				+0.5
3,881,803	+				-0.9
3,881,803	+				+1.1
3,881,803	+				-0.9
3,881,803	+				+0.0
3,881,803	+				-1.5
3,881,803	+				-1.6
3,881,803	+				-1.3
3,881,803	+				-3.7
3,881,803	+				-1.0
3,881,803	+				-1.1
3,881,803	+				-0.1
3,881,803	+				-0.0
3,881,804	-				-0.8
3,881,804	-				-0.4
3,881,804	-				-2.7
3,881,804	-				-1.1
3,881,804	-				-1.7
3,881,804	-				-1.1
3,881,804	-				-1.7
3,881,804	-				-0.4
3,881,804	-				-1.8
3,881,804	-				-0.7
3,881,804	-				-1.0
3,881,804	-				-2.0
3,881,804	-				-0.6
3,881,804	-				-0.1
3,881,804	-				-2.0
3,881,804	-				-3.0
3,881,805	+				+1.1
3,881,805	+				-1.0
3,881,805	+				-0.8
3,881,805	+				-2.3
3,881,805	+				-3.7
3,881,805	+				-0.7
3,881,805	+				-0.9
3,881,805	+				-0.8
3,881,805	+				-1.6
3,881,805	+				-0.7
3,881,805	+				-1.7
3,881,805	+				-1.8
3,881,805	+				-0.3
3,881,806	-				-0.7
3,881,806	-				-0.6
3,881,806	-				-0.5
3,881,806	-				-1.3
3,881,806	-				-0.1
3,881,806	-				-0.3
3,881,806	-				-0.2
3,881,806	-				-1.3
3,881,806	-				-1.8
3,881,806	-				-0.6
3,881,806	-				-1.0
3,881,806	-				-1.1
3,881,806	-				-1.3
3,881,806	-				-0.2
3,881,806	-				-2.8
3,881,807	+				-0.9
3,881,807	+				-0.7
3,881,807	+				-1.4
3,881,807	+				-1.4
3,881,807	+				-0.8
3,881,807	+				-0.6
3,881,807	+				-2.5
3,881,807	+				+0.9
3,881,807	+				-0.3
3,881,807	+				-1.0
3,881,807	+				-0.8
3,881,807	+				-0.9
3,881,807	+				-1.5
3,881,807	+				-0.8
3,881,807	+				-0.8
3,881,807	+				-2.3
3,881,807	+				-0.0
3,881,807	+				-1.6
3,881,808	-				-3.5
3,881,808	-				-2.3
3,881,808	-				-1.1
3,881,808	-				-0.3
3,881,808	-				-0.5
3,881,808	-				-1.5
3,881,808	-				-2.2
3,881,808	-				+0.9
3,881,808	-				-1.5
3,881,808	-				-1.0
3,881,847	-		Sama_3269	0.10	-1.1
3,881,847	-		Sama_3269	0.10	-0.4
3,881,860	+		Sama_3269	0.11	-2.4
3,881,860	+		Sama_3269	0.11	-1.0
3,881,861	-		Sama_3269	0.11	+0.2
3,881,861	-		Sama_3269	0.11	-0.8
3,881,861	-		Sama_3269	0.11	-2.3
3,881,943	+		Sama_3269	0.14	-2.7
3,881,943	+		Sama_3269	0.14	-0.5
3,881,943	+		Sama_3269	0.14	-0.4
3,881,943	+		Sama_3269	0.14	-2.5
3,881,943	+		Sama_3269	0.14	-1.4
3,881,943	+		Sama_3269	0.14	-1.2
3,881,943	+		Sama_3269	0.14	-2.2
3,881,943	+		Sama_3269	0.14	-1.1
3,881,943	+		Sama_3269	0.14	-2.4
3,881,943	+		Sama_3269	0.14	-1.0
3,881,943	+		Sama_3269	0.14	-0.1
3,881,944	-		Sama_3269	0.14	-0.5
3,881,944	-		Sama_3269	0.14	-2.3
3,881,944	-		Sama_3269	0.14	-0.3
3,881,944	-		Sama_3269	0.14	-1.0
3,881,944	-		Sama_3269	0.14	-0.4
3,881,944	-		Sama_3269	0.14	+2.5
3,881,963	+		Sama_3269	0.14	-1.6
3,881,963	+		Sama_3269	0.14	-1.6
3,881,964	-		Sama_3269	0.14	-2.0
3,881,964	-		Sama_3269	0.14	-0.6
3,881,964	-		Sama_3269	0.14	-1.3
3,881,964	-		Sama_3269	0.14	+1.5
3,881,964	-		Sama_3269	0.14	-0.5
3,881,964	-		Sama_3269	0.14	-1.1
3,881,984	+		Sama_3269	0.15	-1.3
3,881,984	+		Sama_3269	0.15	-1.7
3,881,984	+		Sama_3269	0.15	-0.6
3,881,985	-		Sama_3269	0.15	+0.8
3,881,985	-		Sama_3269	0.15	-0.3
3,881,985	-		Sama_3269	0.15	-1.1
3,881,985	-		Sama_3269	0.15	-1.4
3,881,991	+		Sama_3269	0.15	-1.6
3,881,992	-		Sama_3269	0.15	-0.6
3,882,023	+		Sama_3269	0.16	+0.3
3,882,024	-		Sama_3269	0.16	-0.6
3,882,042	-		Sama_3269	0.17	-3.4
3,882,048	-		Sama_3269	0.17	-1.1
3,882,054	+		Sama_3269	0.17	-1.0
3,882,055	-		Sama_3269	0.17	-0.6
3,882,113	+		Sama_3269	0.19	-0.0
3,882,192	+		Sama_3269	0.22	+0.7
3,882,192	+		Sama_3269	0.22	-0.8
3,882,192	+		Sama_3269	0.22	-1.3
3,882,192	+		Sama_3269	0.22	-0.9
3,882,192	+		Sama_3269	0.22	-1.3
3,882,192	+		Sama_3269	0.22	-1.3
3,882,192	+		Sama_3269	0.22	+0.0
3,882,192	+		Sama_3269	0.22	+0.3
3,882,192	+		Sama_3269	0.22	-1.8
3,882,193	-		Sama_3269	0.22	-1.6
3,882,193	-		Sama_3269	0.22	-2.3
3,882,193	-		Sama_3269	0.22	-0.4
3,882,193	-		Sama_3269	0.22	-1.7
3,882,193	-		Sama_3269	0.22	-1.2
3,882,203	+		Sama_3269	0.22	-0.7
3,882,245	+		Sama_3269	0.23	-1.1
3,882,246	-		Sama_3269	0.23	-0.8
3,882,246	-		Sama_3269	0.23	-1.0
3,882,260	+		Sama_3269	0.24	-1.4
3,882,260	+		Sama_3269	0.24	+0.1
3,882,260	+		Sama_3269	0.24	-1.0
3,882,275	+		Sama_3269	0.24	-0.7
3,882,275	+		Sama_3269	0.24	-2.2
3,882,276	-		Sama_3269	0.24	+0.0
3,882,370	+		Sama_3269	0.27	-2.6
3,882,370	+		Sama_3269	0.27	-0.6
3,882,371	-		Sama_3269	0.28	-0.6
3,882,371	-		Sama_3269	0.28	+0.1
3,882,371	-		Sama_3269	0.28	-1.0
3,882,430	+		Sama_3269	0.29	-1.6
3,882,430	+		Sama_3269	0.29	-1.6
3,882,431	-		Sama_3269	0.29	-1.5
3,882,431	-		Sama_3269	0.29	-1.1
3,882,431	-		Sama_3269	0.29	-3.6
3,882,483	+		Sama_3269	0.31	-2.5
3,882,483	+		Sama_3269	0.31	-1.1
3,882,484	-		Sama_3269	0.31	-1.5
3,882,484	-		Sama_3269	0.31	-0.7
3,882,484	-		Sama_3269	0.31	-0.9
3,882,484	-		Sama_3269	0.31	-0.3