Strain Fitness in Shewanella amazonensis SB2B around Sama_3247

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,840,940	+		Sama_3245	0.71	-0.9
3,840,940	+		Sama_3245	0.71	-0.7
3,840,940	+		Sama_3245	0.71	-0.7
3,840,940	+		Sama_3245	0.71	+1.9
3,840,941	-		Sama_3245	0.72	+0.2
3,840,941	-		Sama_3245	0.72	+1.0
3,840,941	-		Sama_3245	0.72	-0.9
3,841,025	+		Sama_3245	0.86	+1.1
3,841,025	+		Sama_3245	0.86	+0.1
3,841,026	-		Sama_3245	0.86	-0.1
3,841,029	+		Sama_3245	0.87	+0.4
3,841,029	+		Sama_3245	0.87	+1.7
3,841,030	-		Sama_3245	0.87	+0.0
3,841,063	+				-0.2
3,841,063	+				+0.5
3,841,063	+				+1.0
3,841,063	+				-0.4
3,841,064	-				+0.5
3,841,064	-				+0.1
3,841,064	-				-2.4
3,841,075	+				+0.1
3,841,075	+				-0.1
3,841,075	+				+0.6
3,841,076	-				+0.3
3,841,076	-				-1.1
3,841,136	-				+0.3
3,841,137	+				+1.1
3,841,137	+				-0.9
3,841,137	+				+1.3
3,841,137	+				-1.5
3,841,137	+				+0.3
3,841,137	+				-0.4
3,841,137	+				-0.5
3,841,137	+				+0.3
3,841,137	+				+0.2
3,841,137	+				-1.4
3,841,137	+				-2.5
3,841,138	-				-0.2
3,841,138	-				+0.8
3,841,138	-				+0.5
3,841,143	-				-0.4
3,841,218	-				-0.5
3,841,218	-				+1.9
3,841,399	+		Sama_3246	0.26	-0.3
3,841,399	+		Sama_3246	0.26	-0.5
3,841,399	+		Sama_3246	0.26	-0.1
3,841,400	-		Sama_3246	0.26	-0.6
3,841,453	+		Sama_3246	0.33	-0.5
3,841,453	+		Sama_3246	0.33	-0.2
3,841,453	+		Sama_3246	0.33	+3.1
3,841,453	+		Sama_3246	0.33	-1.1
3,841,454	-		Sama_3246	0.33	-0.8
3,841,454	-		Sama_3246	0.33	+0.5
3,841,454	-		Sama_3246	0.33	-1.2
3,841,454	-		Sama_3246	0.33	-2.4
3,841,454	-		Sama_3246	0.33	-0.5
3,841,501	+		Sama_3246	0.40	-0.9
3,841,501	+		Sama_3246	0.40	-0.1
3,841,501	+		Sama_3246	0.40	-0.6
3,841,502	-		Sama_3246	0.40	-1.2
3,841,502	-		Sama_3246	0.40	-0.5
3,841,502	-		Sama_3246	0.40	-0.7
3,841,502	-		Sama_3246	0.40	+0.6
3,841,503	+		Sama_3246	0.40	+1.4
3,841,504	-		Sama_3246	0.40	-0.9
3,841,504	-		Sama_3246	0.40	-0.4
3,841,537	+		Sama_3246	0.45	-1.2
3,841,617	+		Sama_3246	0.56	+1.1
3,841,617	+		Sama_3246	0.56	-1.3
3,841,618	-		Sama_3246	0.56	-0.9
3,841,676	+		Sama_3246	0.64	+0.9
3,841,761	+		Sama_3246	0.76	-1.0
3,841,761	+		Sama_3246	0.76	-2.2
3,841,761	+		Sama_3246	0.76	-0.5
3,841,761	+		Sama_3246	0.76	-0.9
3,841,761	+		Sama_3246	0.76	-1.3
3,841,761	+		Sama_3246	0.76	-1.0
3,841,761	+		Sama_3246	0.76	-0.4
3,841,761	+		Sama_3246	0.76	-0.9
3,841,761	+		Sama_3246	0.76	-0.6
3,841,761	+		Sama_3246	0.76	-1.2
3,841,762	-		Sama_3246	0.76	+1.0
3,841,762	-		Sama_3246	0.76	-1.3
3,841,762	-		Sama_3246	0.76	-2.0
3,841,762	-		Sama_3246	0.76	-0.3
3,841,762	-		Sama_3246	0.76	+0.7
3,841,762	-		Sama_3246	0.76	+0.4
3,841,820	+		Sama_3246	0.84	+0.1
3,841,820	+		Sama_3246	0.84	-0.5
3,841,820	+		Sama_3246	0.84	+0.6
3,841,821	-		Sama_3246	0.84	+3.5
3,841,821	-		Sama_3246	0.84	-0.6
3,841,821	-		Sama_3246	0.84	-0.4
3,841,821	-		Sama_3246	0.84	-1.4
3,841,821	-		Sama_3246	0.84	+0.6
3,841,821	-		Sama_3246	0.84	-1.1
3,841,848	+		Sama_3246	0.88	-0.2
3,841,848	+		Sama_3246	0.88	-0.3
3,841,849	-		Sama_3246	0.88	+1.5
3,841,849	-		Sama_3246	0.88	-0.1
3,841,849	-		Sama_3246	0.88	-0.2
3,841,868	+				-0.9
3,841,869	-				-0.9
3,841,911	+				-0.9
3,841,911	+				-0.5
3,841,912	-				-1.1
3,841,912	-				+0.8
3,841,924	+				-1.5
3,841,925	-				+0.1
3,841,925	-				+0.0
3,841,925	-				-0.9
3,841,955	+				-3.0
3,841,956	-				-0.9
3,841,956	-				-1.3
3,841,972	+				-0.4
3,841,972	+				+0.5
3,841,973	-				-2.1
3,841,973	-				-1.2
3,842,008	+				-0.8
3,842,174	+		Sama_3247	0.27	-2.4
3,842,319	-		Sama_3247	0.43	-1.1
3,842,404	+		Sama_3247	0.53	+0.2
3,842,405	-		Sama_3247	0.53	-3.0
3,842,405	-		Sama_3247	0.53	-0.1
3,842,417	+		Sama_3247	0.54	+0.5
3,842,417	+		Sama_3247	0.54	-2.6
3,842,418	-		Sama_3247	0.55	-0.7
3,842,418	-		Sama_3247	0.55	-1.3
3,842,459	+		Sama_3247	0.59	-0.6
3,842,459	+		Sama_3247	0.59	-1.5
3,842,553	+		Sama_3247	0.70	-0.5
3,842,553	+		Sama_3247	0.70	-0.2
3,842,554	-		Sama_3247	0.70	-1.2
3,842,706	+		Sama_3247	0.87	+2.7
3,842,741	+				-1.3
3,842,741	+				-2.2
3,842,741	+				-0.2
3,842,741	+				-0.1
3,842,741	+				-0.3
3,842,741	+				-0.6
3,842,742	-				-0.9
3,842,742	-				+1.5
3,842,742	-				-2.1
3,842,742	-				-2.1
3,842,742	-				-2.1
3,842,760	+				+0.7
3,842,761	-				-0.3
3,842,790	-				-1.5
3,842,823	-				-0.1
3,842,862	-				+1.6
3,842,862	-				+1.3
3,842,862	-				+1.0
3,842,930	+		Sama_3248	0.17	+1.9
3,842,930	+		Sama_3248	0.17	+1.5
3,842,930	+		Sama_3248	0.17	+0.3
3,842,930	+		Sama_3248	0.17	-0.5
3,842,931	-		Sama_3248	0.17	-0.0
3,842,931	-		Sama_3248	0.17	+0.8
3,842,931	-		Sama_3248	0.17	+0.7
3,842,993	+		Sama_3248	0.26	+0.7
3,842,993	+		Sama_3248	0.26	-0.7
3,842,994	-		Sama_3248	0.27	-0.1
3,843,017	-		Sama_3248	0.30	+2.2
3,843,030	+		Sama_3248	0.32	-1.1
3,843,030	+		Sama_3248	0.32	-1.9
3,843,030	+		Sama_3248	0.32	+1.3
3,843,031	-		Sama_3248	0.32	+2.3
3,843,031	-		Sama_3248	0.32	+2.4
3,843,031	-		Sama_3248	0.32	+1.9
3,843,097	+		Sama_3248	0.43	-1.1
3,843,098	-		Sama_3248	0.43	+1.6
3,843,098	-		Sama_3248	0.43	+2.0
3,843,098	-		Sama_3248	0.43	+1.3
3,843,098	-		Sama_3248	0.43	+1.9
3,843,113	-		Sama_3248	0.45	+1.3
3,843,113	-		Sama_3248	0.45	+1.1
3,843,155	+		Sama_3248	0.52	+1.2
3,843,155	+		Sama_3248	0.52	+0.5
3,843,155	+		Sama_3248	0.52	+0.6
3,843,155	+		Sama_3248	0.52	+0.8
3,843,156	-		Sama_3248	0.52	+1.7
3,843,156	-		Sama_3248	0.52	-1.3
3,843,156	-		Sama_3248	0.52	+2.6
3,843,156	-		Sama_3248	0.52	+2.1
3,843,205	+		Sama_3248	0.60	+0.9
3,843,365	+		Sama_3248	0.85	+0.2
3,843,460	+				+2.1
3,843,461	-				+0.6