Strain Fitness in Shewanella amazonensis SB2B around Sama_3215

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,805,930	+				-0.3
3,805,930	+				-0.5
3,805,930	+				-0.5
3,805,930	+				-1.7
3,805,931	-				+1.3
3,805,934	+				-0.3
3,805,935	-				-0.4
3,805,935	-				+0.7
3,806,030	+				-1.0
3,806,030	+				-0.8
3,806,030	+				+0.1
3,806,031	-				+1.5
3,806,031	-				-2.0
3,806,031	-				-0.5
3,806,031	-				-0.3
3,806,031	-				-0.6
3,806,031	-				-1.2
3,806,031	-				+0.3
3,806,031	-				-0.2
3,806,186	+		Sama_3214	0.21	-2.1
3,806,186	+		Sama_3214	0.21	+0.1
3,806,186	+		Sama_3214	0.21	+0.5
3,806,187	-		Sama_3214	0.21	+1.3
3,806,187	-		Sama_3214	0.21	+0.9
3,806,187	-		Sama_3214	0.21	-0.6
3,806,187	-		Sama_3214	0.21	+0.2
3,806,276	-		Sama_3214	0.30	-0.0
3,806,296	+		Sama_3214	0.33	-1.0
3,806,296	+		Sama_3214	0.33	-1.7
3,806,296	+		Sama_3214	0.33	+0.2
3,806,296	+		Sama_3214	0.33	-0.1
3,806,297	-		Sama_3214	0.33	+0.5
3,806,297	-		Sama_3214	0.33	-0.9
3,806,297	-		Sama_3214	0.33	-1.0
3,806,297	-		Sama_3214	0.33	-0.1
3,806,297	-		Sama_3214	0.33	+0.4
3,806,314	+		Sama_3214	0.35	-2.2
3,806,315	-		Sama_3214	0.35	-0.3
3,806,315	-		Sama_3214	0.35	+1.0
3,806,413	+		Sama_3214	0.45	-2.1
3,806,476	+		Sama_3214	0.52	-0.7
3,806,477	-		Sama_3214	0.52	+0.5
3,806,477	-		Sama_3214	0.52	+0.0
3,806,541	-		Sama_3214	0.59	-1.7
3,806,553	+		Sama_3214	0.61	-0.1
3,806,553	+		Sama_3214	0.61	+1.8
3,806,554	-		Sama_3214	0.61	-0.5
3,806,554	-		Sama_3214	0.61	+0.2
3,806,554	-		Sama_3214	0.61	-0.6
3,806,557	+		Sama_3214	0.61	-0.4
3,806,557	+		Sama_3214	0.61	-2.0
3,806,557	+		Sama_3214	0.61	+0.3
3,806,557	+		Sama_3214	0.61	-0.5
3,806,557	+		Sama_3214	0.61	-0.9
3,806,557	+		Sama_3214	0.61	-0.4
3,806,557	+		Sama_3214	0.61	-0.5
3,806,558	-		Sama_3214	0.61	+0.9
3,806,558	-		Sama_3214	0.61	-2.1
3,806,558	-		Sama_3214	0.61	-1.0
3,806,558	-		Sama_3214	0.61	+0.5
3,806,584	+		Sama_3214	0.64	-1.9
3,806,584	+		Sama_3214	0.64	-1.3
3,806,585	-		Sama_3214	0.64	-0.3
3,806,598	-		Sama_3214	0.65	+0.3
3,806,598	-		Sama_3214	0.65	-0.3
3,806,695	+		Sama_3214	0.76	+0.7
3,806,695	+		Sama_3214	0.76	+1.0
3,806,696	-		Sama_3214	0.76	-1.4
3,806,814	+		Sama_3214	0.89	-0.7
3,806,815	-		Sama_3214	0.89	-0.1
3,806,815	-		Sama_3214	0.89	-1.4
3,806,815	-		Sama_3214	0.89	+0.8
3,806,815	-		Sama_3214	0.89	+0.0
3,806,863	+				-0.7
3,806,863	+				-0.6
3,806,863	+				-1.2
3,806,863	+				+0.7
3,806,863	+				-0.8
3,806,864	-				-0.3
3,806,864	-				-0.9
3,806,866	+				+1.2
3,806,866	+				-0.2
3,806,866	+				-1.1
3,806,866	+				-1.8
3,806,867	-				-0.5
3,806,867	-				-1.1
3,806,899	-				-0.3
3,806,916	+				-0.5
3,806,916	+				-1.0
3,806,916	+				-1.2
3,806,916	+				-0.8
3,806,916	+				+1.0
3,806,916	+				-0.7
3,806,916	+				-0.5
3,806,916	+				+0.2
3,806,916	+				-1.5
3,806,917	-				-1.3
3,806,917	-				-0.7
3,806,917	-				+1.8
3,806,927	+				-0.7
3,806,927	+				-0.7
3,806,927	+				-0.5
3,806,927	+				-1.6
3,806,927	+				-2.0
3,806,927	+				-0.7
3,806,927	+				-3.3
3,806,928	-				-0.4
3,806,928	-				-0.1
3,806,928	-				-0.4
3,806,928	-				+0.5
3,806,928	-				-0.2
3,806,928	-				-0.4
3,806,928	-				-2.3
3,806,928	-				-0.5
3,806,928	-				-0.0
3,806,928	-				-0.1
3,806,928	-				-1.1
3,807,009	+				-3.1
3,807,009	+				-0.3
3,807,009	+				-2.0
3,807,009	+				-1.6
3,807,010	-				-0.4
3,807,045	+				+0.7
3,807,045	+				-1.3
3,807,046	-				-2.0
3,807,046	-				-2.5
3,807,046	-				-0.1
3,807,046	-				-0.6
3,807,046	-				-0.1
3,807,072	+		Sama_3215	0.11	-2.2
3,807,073	-		Sama_3215	0.11	-1.7
3,807,095	+		Sama_3215	0.13	-0.8
3,807,095	+		Sama_3215	0.13	-2.1
3,807,096	-		Sama_3215	0.13	-1.1
3,807,111	+		Sama_3215	0.14	-2.2
3,807,112	-		Sama_3215	0.14	-1.9
3,807,112	-		Sama_3215	0.14	+0.5
3,807,112	-		Sama_3215	0.14	-1.2
3,807,125	+		Sama_3215	0.15	-1.5
3,807,125	+		Sama_3215	0.15	-0.5
3,807,125	+		Sama_3215	0.15	-2.6
3,807,125	+		Sama_3215	0.15	+0.5
3,807,125	+		Sama_3215	0.15	-0.9
3,807,126	-		Sama_3215	0.15	-0.9
3,807,126	-		Sama_3215	0.15	-3.3
3,807,126	-		Sama_3215	0.15	-0.9
3,807,126	-		Sama_3215	0.15	-1.3
3,807,126	-		Sama_3215	0.15	-1.5
3,807,147	+		Sama_3215	0.17	-2.2
3,807,147	+		Sama_3215	0.17	-1.7
3,807,156	-		Sama_3215	0.17	-2.9
3,807,223	+		Sama_3215	0.23	+0.0
3,807,223	+		Sama_3215	0.23	-2.8
3,807,223	+		Sama_3215	0.23	-1.5
3,807,223	+		Sama_3215	0.23	-0.9
3,807,223	+		Sama_3215	0.23	-1.7
3,807,223	+		Sama_3215	0.23	-3.4
3,807,223	+		Sama_3215	0.23	-2.2
3,807,224	-		Sama_3215	0.23	-1.9
3,807,224	-		Sama_3215	0.23	-1.6
3,807,224	-		Sama_3215	0.23	-0.1
3,807,224	-		Sama_3215	0.23	-1.3
3,807,224	-		Sama_3215	0.23	-1.3
3,807,224	-		Sama_3215	0.23	-1.3
3,807,227	+		Sama_3215	0.23	+0.1
3,807,227	+		Sama_3215	0.23	-2.4
3,807,227	+		Sama_3215	0.23	-1.6
3,807,227	+		Sama_3215	0.23	-2.1
3,807,228	-		Sama_3215	0.23	-2.2
3,807,228	-		Sama_3215	0.23	+0.2
3,807,228	-		Sama_3215	0.23	-0.9
3,807,254	+		Sama_3215	0.25	-1.2
3,807,254	+		Sama_3215	0.25	-1.6
3,807,255	-		Sama_3215	0.25	-2.7
3,807,255	-		Sama_3215	0.25	-2.4
3,807,255	-		Sama_3215	0.25	+0.5
3,807,255	-		Sama_3215	0.25	+0.0
3,807,255	-		Sama_3215	0.25	+0.5
3,807,255	-		Sama_3215	0.25	-2.8
3,807,260	+		Sama_3215	0.25	-2.1
3,807,260	+		Sama_3215	0.25	-0.9
3,807,260	+		Sama_3215	0.25	-0.3
3,807,260	+		Sama_3215	0.25	-0.7
3,807,261	-		Sama_3215	0.25	-1.9
3,807,282	+		Sama_3215	0.27	-1.5
3,807,282	+		Sama_3215	0.27	-0.7
3,807,282	+		Sama_3215	0.27	-0.5
3,807,282	+		Sama_3215	0.27	-2.1
3,807,283	-		Sama_3215	0.27	-1.9
3,807,283	-		Sama_3215	0.27	-0.4
3,807,283	-		Sama_3215	0.27	-1.5
3,807,283	-		Sama_3215	0.27	-0.9
3,807,446	+		Sama_3215	0.39	-0.5
3,807,446	+		Sama_3215	0.39	+0.5
3,807,447	-		Sama_3215	0.39	-2.6
3,807,447	-		Sama_3215	0.39	+0.5
3,807,447	-		Sama_3215	0.39	-0.5
3,807,537	-		Sama_3215	0.46	-2.3
3,807,589	+		Sama_3215	0.50	-1.9
3,807,589	+		Sama_3215	0.50	-2.0
3,807,590	-		Sama_3215	0.50	-3.0
3,807,590	-		Sama_3215	0.50	-0.9
3,807,617	+		Sama_3215	0.52	-1.1
3,807,617	+		Sama_3215	0.52	-2.4
3,807,618	-		Sama_3215	0.52	-1.1
3,807,618	-		Sama_3215	0.52	-1.3
3,807,691	-		Sama_3215	0.58	-1.6
3,807,712	-		Sama_3215	0.60	-1.9
3,807,720	+		Sama_3215	0.60	-1.0
3,807,720	+		Sama_3215	0.60	-3.3
3,807,757	+		Sama_3215	0.63	-0.3
3,807,757	+		Sama_3215	0.63	-0.7
3,807,761	-		Sama_3215	0.63	-3.3
3,807,761	-		Sama_3215	0.63	-0.5
3,807,761	-		Sama_3215	0.63	-0.9
3,807,783	+		Sama_3215	0.65	-0.3
3,807,783	+		Sama_3215	0.65	-1.4
3,807,784	-		Sama_3215	0.65	-0.4
3,807,803	+		Sama_3215	0.66	-2.6
3,807,803	+		Sama_3215	0.66	-1.1
3,807,804	-		Sama_3215	0.67	-1.5
3,807,804	-		Sama_3215	0.67	-2.6
3,807,825	+		Sama_3215	0.68	-2.2
3,807,831	+		Sama_3215	0.69	-0.1
3,807,831	+		Sama_3215	0.69	-2.3
3,807,831	+		Sama_3215	0.69	-0.9
3,807,831	+		Sama_3215	0.69	-2.4
3,807,832	-		Sama_3215	0.69	-3.1
3,807,832	-		Sama_3215	0.69	-1.7
3,807,832	-		Sama_3215	0.69	-1.1
3,807,832	-		Sama_3215	0.69	-1.1
3,807,835	+		Sama_3215	0.69	-1.7
3,807,835	+		Sama_3215	0.69	+0.7
3,807,835	+		Sama_3215	0.69	-1.5
3,807,835	+		Sama_3215	0.69	-3.5
3,807,835	+		Sama_3215	0.69	-0.9
3,807,836	-		Sama_3215	0.69	+1.5
3,807,836	-		Sama_3215	0.69	-1.4
3,807,836	-		Sama_3215	0.69	-2.0
3,807,836	-		Sama_3215	0.69	-1.3
3,807,836	-		Sama_3215	0.69	-1.3
3,807,875	+		Sama_3215	0.72	-1.0
3,807,876	-		Sama_3215	0.72	-2.0
3,807,898	-		Sama_3215	0.74	-0.8
3,807,907	+		Sama_3215	0.74	-2.8
3,807,907	+		Sama_3215	0.74	-2.0
3,808,018	+		Sama_3215	0.83	-0.4
3,808,228	+				-0.7
3,808,229	-				-0.5
3,808,263	+				+0.3
3,808,263	+				+0.0
3,808,263	+				-2.8
3,808,264	-				-1.7
3,808,274	+				-1.3
3,808,274	+				-2.2
3,808,274	+				-0.9
3,808,275	-				+0.5
3,808,275	-				+0.0
3,808,275	-				+1.5
3,808,275	-				-1.1
3,808,275	-				+1.0
3,808,275	-				+0.2
3,808,275	-				-1.9
3,808,279	+				-1.3
3,808,280	-				-0.0
3,808,280	-				+0.0
3,808,310	-				+0.5
3,808,310	-				-0.3
3,808,310	-				-0.4
3,808,310	-				-2.5
3,808,310	-				+0.2
3,808,331	+				-1.0
3,808,331	+				-0.5
3,808,346	-				-0.4
3,808,347	+				-1.2
3,808,347	+				-0.3
3,808,347	+				+0.4
3,808,347	+				-1.1
3,808,347	+				+0.4
3,808,347	+				-2.7
3,808,347	+				-0.9
3,808,347	+				-0.5
3,808,347	+				-1.9
3,808,347	+				-0.8
3,808,347	+				+0.3
3,808,347	+				-0.1
3,808,348	-				+1.5
3,808,354	+				+0.2
3,808,354	+				+1.2
3,808,354	+				-0.5
3,808,354	+				+1.5
3,808,354	+				-0.6
3,808,354	+				+0.9
3,808,354	+				+0.8
3,808,354	+				-1.2
3,808,354	+				-0.1
3,808,355	-				+1.0
3,808,355	-				-0.9
3,808,447	-		Sama_3216	0.15	-0.7
3,808,447	-		Sama_3216	0.15	+0.5
3,808,447	-		Sama_3216	0.15	-0.9
3,808,534	-		Sama_3216	0.42	-1.5
3,808,534	-		Sama_3216	0.42	+0.0
3,808,553	-		Sama_3216	0.48	-1.7
3,808,622	-		Sama_3216	0.69	-0.3
3,808,663	+		Sama_3216	0.81	+0.5
3,808,721	+				+1.0
3,808,721	+				-0.4
3,808,765	-				+0.8
3,808,808	+				+0.0
3,808,808	+				-0.8
3,808,808	+				-0.4
3,808,820	+				-2.6
3,808,820	+				-1.2
3,808,820	+				+0.3
3,808,820	+				-1.9
3,808,820	+				-1.1
3,808,835	+				-1.5
3,808,842	+				-1.3
3,808,874	+				-2.0