Strain Fitness in Shewanella amazonensis SB2B around Sama_2679

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,206,163	+		Sama_2678	0.43	-2.0
3,206,196	+		Sama_2678	0.45	-1.9
3,206,386	+		Sama_2678	0.56	-2.5
3,206,386	+		Sama_2678	0.56	-1.5
3,206,386	+		Sama_2678	0.56	-3.1
3,206,386	+		Sama_2678	0.56	-1.2
3,206,386	+		Sama_2678	0.56	-1.8
3,206,387	-		Sama_2678	0.56	-1.2
3,206,387	-		Sama_2678	0.56	-1.2
3,206,387	-		Sama_2678	0.56	-2.9
3,206,387	-		Sama_2678	0.56	-3.2
3,206,387	-		Sama_2678	0.56	-1.0
3,206,387	-		Sama_2678	0.56	-2.1
3,206,387	-		Sama_2678	0.56	-1.7
3,206,387	-		Sama_2678	0.56	-1.4
3,206,483	+		Sama_2678	0.61	-0.5
3,206,484	-		Sama_2678	0.61	+0.5
3,206,484	-		Sama_2678	0.61	-2.2
3,206,484	-		Sama_2678	0.61	-2.5
3,206,484	-		Sama_2678	0.61	+1.8
3,206,604	-		Sama_2678	0.68	-1.4
3,206,619	+		Sama_2678	0.69	-2.2
3,206,620	-		Sama_2678	0.69	+1.2
3,206,620	-		Sama_2678	0.69	-2.4
3,206,620	-		Sama_2678	0.69	-0.0
3,206,620	-		Sama_2678	0.69	-1.4
3,206,748	-		Sama_2678	0.77	-1.5
3,206,748	-		Sama_2678	0.77	-2.5
3,206,915	+		Sama_2678	0.86	-2.2
3,206,935	+		Sama_2678	0.87	-1.0
3,206,936	-		Sama_2678	0.87	+0.3
3,206,936	-		Sama_2678	0.87	-2.0
3,206,937	+		Sama_2678	0.87	-0.7
3,206,937	+		Sama_2678	0.87	-2.6
3,206,938	-		Sama_2678	0.88	-0.3
3,206,938	-		Sama_2678	0.88	-1.2
3,206,938	-		Sama_2678	0.88	-0.6
3,206,938	-		Sama_2678	0.88	+0.5
3,206,938	-		Sama_2678	0.88	-0.7
3,206,941	+		Sama_2678	0.88	-2.5
3,206,941	+		Sama_2678	0.88	-1.5
3,207,072	+				-2.7
3,207,072	+				-2.0
3,207,072	+				-1.2
3,207,072	+				-0.7
3,207,072	+				-1.8
3,207,072	+				-1.0
3,207,073	-				-2.7
3,207,073	-				-0.5
3,207,073	-				-1.4
3,207,073	-				+0.1
3,207,073	-				-2.4
3,207,075	+				-1.2
3,207,075	+				+0.3
3,207,075	+				-1.5
3,207,076	-				-1.2
3,207,076	-				-3.1
3,207,076	-				-2.3
3,207,096	+				+0.6
3,207,252	+				-1.5
3,207,297	+				-0.5
3,207,297	+				-2.6
3,207,298	-				-0.9
3,207,298	-				-2.5
3,207,298	-				+0.3
3,207,325	-				-1.0
3,207,880	+		Sama_2679	0.41	-2.6
3,207,880	+		Sama_2679	0.41	-1.2
3,207,880	+		Sama_2679	0.41	-0.7
3,207,880	+		Sama_2679	0.41	-2.4
3,207,880	+		Sama_2679	0.41	-0.7
3,207,880	+		Sama_2679	0.41	-2.2
3,207,880	+		Sama_2679	0.41	-2.1
3,207,880	+		Sama_2679	0.41	-2.4
3,207,881	-		Sama_2679	0.41	-2.2
3,207,881	-		Sama_2679	0.41	-2.8
3,207,881	-		Sama_2679	0.41	-1.5
3,207,881	-		Sama_2679	0.41	-1.1
3,207,881	-		Sama_2679	0.41	-1.0
3,207,881	-		Sama_2679	0.41	+0.3
3,207,881	-		Sama_2679	0.41	+0.0
3,207,881	-		Sama_2679	0.41	+0.1
3,207,881	-		Sama_2679	0.41	-1.0
3,207,881	-		Sama_2679	0.41	-1.7
3,207,881	-		Sama_2679	0.41	-0.2
3,207,881	-		Sama_2679	0.41	-0.2
3,207,881	-		Sama_2679	0.41	-2.1
3,207,882	+		Sama_2679	0.41	-2.7
3,207,882	+		Sama_2679	0.41	-1.5
3,207,882	+		Sama_2679	0.41	-1.5
3,207,882	+		Sama_2679	0.41	-1.7
3,207,882	+		Sama_2679	0.41	-2.7
3,207,882	+		Sama_2679	0.41	-0.4
3,207,882	+		Sama_2679	0.41	+0.0
3,207,883	-		Sama_2679	0.41	-0.2
3,207,883	-		Sama_2679	0.41	-2.0
3,207,883	-		Sama_2679	0.41	-1.2
3,207,883	-		Sama_2679	0.41	+0.3
3,207,883	-		Sama_2679	0.41	-1.5
3,207,944	+		Sama_2679	0.44	-2.4
3,207,944	+		Sama_2679	0.44	+1.3
3,207,944	+		Sama_2679	0.44	-1.8
3,207,944	+		Sama_2679	0.44	+0.1
3,207,944	+		Sama_2679	0.44	-1.4
3,207,944	+		Sama_2679	0.44	-2.7
3,207,944	+		Sama_2679	0.44	-3.4
3,207,944	+		Sama_2679	0.44	-1.5
3,207,945	-		Sama_2679	0.44	-0.9
3,207,945	-		Sama_2679	0.44	-2.6
3,207,945	-		Sama_2679	0.44	-0.2
3,207,950	+		Sama_2679	0.45	-0.3
3,207,951	-		Sama_2679	0.45	-1.2
3,208,013	-		Sama_2679	0.48	-2.1
3,208,013	-		Sama_2679	0.48	-1.7
3,208,091	+		Sama_2679	0.52	-1.9
3,208,091	+		Sama_2679	0.52	-0.5
3,208,092	-		Sama_2679	0.53	-2.2
3,208,102	+		Sama_2679	0.53	-2.0
3,208,102	+		Sama_2679	0.53	-2.5
3,208,102	+		Sama_2679	0.53	-3.0
3,208,129	+		Sama_2679	0.55	-1.5
3,208,212	-		Sama_2679	0.59	-2.6
3,208,259	-		Sama_2679	0.62	-3.2
3,208,304	+		Sama_2679	0.64	-1.7
3,208,304	+		Sama_2679	0.64	-1.7
3,208,304	+		Sama_2679	0.64	-0.2
3,208,304	+		Sama_2679	0.64	-2.0
3,208,304	+		Sama_2679	0.64	-2.0
3,208,305	-		Sama_2679	0.64	-1.5
3,208,305	-		Sama_2679	0.64	-1.8
3,208,305	-		Sama_2679	0.64	-2.5
3,208,308	+		Sama_2679	0.65	-2.0
3,208,308	+		Sama_2679	0.65	-1.7
3,208,308	+		Sama_2679	0.65	-0.5
3,208,308	+		Sama_2679	0.65	-0.7
3,208,308	+		Sama_2679	0.65	-1.0
3,208,308	+		Sama_2679	0.65	-2.2
3,208,308	+		Sama_2679	0.65	-1.5
3,208,308	+		Sama_2679	0.65	-2.1
3,208,309	-		Sama_2679	0.65	-1.5
3,208,309	-		Sama_2679	0.65	-1.2
3,208,309	-		Sama_2679	0.65	-1.6
3,208,309	-		Sama_2679	0.65	-0.4
3,208,309	-		Sama_2679	0.65	+0.2
3,208,309	-		Sama_2679	0.65	-1.0
3,208,309	-		Sama_2679	0.65	-1.8
3,208,309	-		Sama_2679	0.65	-1.7
3,208,309	-		Sama_2679	0.65	-2.6
3,208,309	-		Sama_2679	0.65	-0.2
3,208,309	-		Sama_2679	0.65	-1.3
3,208,328	+		Sama_2679	0.66	-2.4
3,208,329	-		Sama_2679	0.66	-2.2
3,208,329	-		Sama_2679	0.66	-1.2
3,208,368	-		Sama_2679	0.68	+0.0
3,208,406	+		Sama_2679	0.70	-1.8
3,208,406	+		Sama_2679	0.70	+1.9
3,208,407	-		Sama_2679	0.70	-1.4
3,208,407	-		Sama_2679	0.70	-1.8
3,208,407	-		Sama_2679	0.70	-0.5
3,208,535	-		Sama_2679	0.77	-2.0
3,208,595	+		Sama_2679	0.81	-2.8
3,208,595	+		Sama_2679	0.81	-2.0
3,208,596	-		Sama_2679	0.81	-0.5
3,208,596	-		Sama_2679	0.81	-0.8
3,208,605	-		Sama_2679	0.81	-1.5
3,208,635	+		Sama_2679	0.83	-1.7
3,208,635	+		Sama_2679	0.83	-1.5
3,208,636	-		Sama_2679	0.83	-1.7
3,208,639	-		Sama_2679	0.83	-2.8
3,208,661	+		Sama_2679	0.84	-2.7
3,208,685	+		Sama_2679	0.86	-2.7
3,208,729	-		Sama_2679	0.88	-2.1
3,208,729	-		Sama_2679	0.88	-2.7
3,208,746	+		Sama_2679	0.89	-0.5
3,208,769	+				-0.7
3,208,770	-				-3.2
3,208,812	+				-2.7
3,208,812	+				-2.2
3,208,812	+				-1.2
3,208,813	-				-1.7
3,208,827	+				+0.3
3,208,828	-				-0.2
3,208,828	-				-3.0
3,208,833	+				-1.7
3,208,834	-				-2.7
3,208,904	+				-1.8
3,208,904	+				-2.0
3,208,945	+				-1.7
3,208,945	+				-1.7
3,208,945	+				-0.8
3,208,945	+				-2.0
3,208,945	+				-0.8
3,208,945	+				-0.0
3,208,945	+				+0.0
3,208,945	+				-1.8
3,208,945	+				+0.1
3,208,945	+				+0.3
3,208,945	+				-0.4
3,208,945	+				+0.5
3,208,945	+				-1.0
3,208,945	+				-1.5
3,208,945	+				-1.0
3,208,945	+				+0.0
3,208,945	+				+0.5
3,208,945	+				-1.0
3,208,945	+				-2.0
3,208,945	+				-1.3
3,208,945	+				-0.2
3,208,946	-				-1.7
3,208,946	-				-0.2
3,208,946	-				-0.1
3,208,946	-				+0.2
3,208,946	-				+1.3
3,208,946	-				+0.1
3,208,946	-				+0.3
3,208,946	-				+0.5
3,208,946	-				-0.3
3,208,946	-				-0.2
3,208,946	-				-0.5
3,208,946	-				-0.9
3,208,946	-				-0.8
3,208,946	-				+1.7
3,208,946	-				-0.7
3,208,947	+				+0.9
3,208,947	+				-0.5
3,208,947	+				-0.1
3,209,000	+				-0.3
3,209,086	+				-0.1
3,209,098	-				-0.2
3,209,098	-				-0.2
3,209,110	+				+0.8
3,209,110	+				+0.8
3,209,110	+				+0.6
3,209,110	+				+0.1
3,209,110	+				+0.4
3,209,110	+				-0.6
3,209,110	+				-0.3
3,209,111	-				-0.7
3,209,111	-				+0.6
3,209,135	+				+2.2
3,209,136	-				-0.7
3,209,288	-				+0.6
3,209,350	+		Sama_2680	0.14	-2.1
3,209,350	+		Sama_2680	0.14	-0.8
3,209,351	-		Sama_2680	0.14	-0.2
3,209,413	+		Sama_2680	0.19	+1.2
3,209,413	+		Sama_2680	0.19	-0.4
3,209,503	-		Sama_2680	0.26	-0.4
3,209,510	-		Sama_2680	0.26	-0.7
3,209,613	+		Sama_2680	0.35	+0.1
3,209,614	-		Sama_2680	0.35	+0.0
3,209,746	+		Sama_2680	0.45	-1.6
3,209,747	-		Sama_2680	0.45	+2.3
3,209,748	+		Sama_2680	0.45	-0.1
3,209,749	-		Sama_2680	0.45	-0.8
3,209,749	-		Sama_2680	0.45	-1.8
3,209,749	-		Sama_2680	0.45	-0.2