Strain Fitness in Shewanella amazonensis SB2B around Sama_2678

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,204,573	+		Sama_2676	0.85	+0.1
3,204,573	+		Sama_2676	0.85	+0.1
3,204,703	-		Sama_2676	0.89	+0.1
3,204,722	-		Sama_2676	0.90	-0.0
3,204,836	+				+0.4
3,204,836	+				+1.0
3,204,836	+				-0.1
3,204,837	-				+2.3
3,204,837	-				+0.0
3,204,846	+				+0.5
3,204,853	+				+0.6
3,204,853	+				+0.4
3,204,853	+				+1.4
3,204,853	+				+1.3
3,204,853	+				+1.1
3,204,853	+				-0.1
3,204,853	+				-0.4
3,204,854	-				+0.5
3,204,854	-				+0.2
3,204,854	-				+0.2
3,204,854	-				-0.2
3,204,854	-				+0.9
3,204,854	-				-1.0
3,204,855	+				+1.0
3,204,855	+				-0.5
3,204,856	-				+0.5
3,204,949	+				-0.8
3,204,950	-				+0.6
3,204,950	-				+0.9
3,204,965	+				-0.4
3,204,966	-				-0.7
3,204,966	-				+0.0
3,205,008	+				-1.5
3,205,117	+				-0.3
3,205,117	+				-1.6
3,205,119	+				+1.1
3,205,119	+				+1.0
3,205,119	+				-0.1
3,205,119	+				+1.3
3,205,119	+				-0.6
3,205,120	-				+0.0
3,205,120	-				-0.1
3,205,120	-				-0.4
3,205,120	-				+0.3
3,205,120	-				-2.2
3,205,120	-				-0.4
3,205,137	+				+0.1
3,205,138	-				+2.6
3,205,172	+				-2.2
3,205,211	+		Sama_2677	0.27	+1.3
3,205,211	+		Sama_2677	0.27	+1.0
3,205,237	-		Sama_2677	0.41	+0.3
3,205,522	-				-2.0
3,205,522	-				-1.7
3,205,664	-		Sama_2678	0.14	-1.2
3,205,748	-		Sama_2678	0.19	-2.0
3,205,784	+		Sama_2678	0.21	-2.4
3,205,785	-		Sama_2678	0.21	-1.0
3,205,796	-		Sama_2678	0.21	-1.8
3,205,808	-		Sama_2678	0.22	+0.3
3,205,814	-		Sama_2678	0.22	-1.9
3,205,814	-		Sama_2678	0.22	+1.1
3,205,889	-		Sama_2678	0.27	-2.0
3,205,988	+		Sama_2678	0.33	-1.1
3,205,988	+		Sama_2678	0.33	-2.0
3,205,989	-		Sama_2678	0.33	-2.3
3,206,008	-		Sama_2678	0.34	-1.8
3,206,070	+		Sama_2678	0.37	-2.4
3,206,070	+		Sama_2678	0.37	-1.2
3,206,071	-		Sama_2678	0.37	-0.7
3,206,137	-		Sama_2678	0.41	-1.7
3,206,163	+		Sama_2678	0.43	-2.0
3,206,196	+		Sama_2678	0.45	-1.9
3,206,386	+		Sama_2678	0.56	-2.5
3,206,386	+		Sama_2678	0.56	-1.5
3,206,386	+		Sama_2678	0.56	-3.1
3,206,386	+		Sama_2678	0.56	-1.2
3,206,386	+		Sama_2678	0.56	-1.8
3,206,387	-		Sama_2678	0.56	-1.2
3,206,387	-		Sama_2678	0.56	-1.2
3,206,387	-		Sama_2678	0.56	-2.9
3,206,387	-		Sama_2678	0.56	-3.2
3,206,387	-		Sama_2678	0.56	-1.0
3,206,387	-		Sama_2678	0.56	-2.1
3,206,387	-		Sama_2678	0.56	-1.7
3,206,387	-		Sama_2678	0.56	-1.4
3,206,483	+		Sama_2678	0.61	-0.5
3,206,484	-		Sama_2678	0.61	+0.5
3,206,484	-		Sama_2678	0.61	-2.2
3,206,484	-		Sama_2678	0.61	-2.5
3,206,484	-		Sama_2678	0.61	+1.8
3,206,604	-		Sama_2678	0.68	-1.4
3,206,619	+		Sama_2678	0.69	-2.2
3,206,620	-		Sama_2678	0.69	+1.2
3,206,620	-		Sama_2678	0.69	-2.4
3,206,620	-		Sama_2678	0.69	-0.0
3,206,620	-		Sama_2678	0.69	-1.4
3,206,748	-		Sama_2678	0.77	-1.5
3,206,748	-		Sama_2678	0.77	-2.5
3,206,915	+		Sama_2678	0.86	-2.2
3,206,935	+		Sama_2678	0.87	-1.0
3,206,936	-		Sama_2678	0.87	+0.3
3,206,936	-		Sama_2678	0.87	-2.0
3,206,937	+		Sama_2678	0.87	-0.7
3,206,937	+		Sama_2678	0.87	-2.6
3,206,938	-		Sama_2678	0.88	-0.3
3,206,938	-		Sama_2678	0.88	-1.2
3,206,938	-		Sama_2678	0.88	-0.6
3,206,938	-		Sama_2678	0.88	+0.5
3,206,938	-		Sama_2678	0.88	-0.7
3,206,941	+		Sama_2678	0.88	-2.5
3,206,941	+		Sama_2678	0.88	-1.5
3,207,072	+				-2.7
3,207,072	+				-2.0
3,207,072	+				-1.2
3,207,072	+				-0.7
3,207,072	+				-1.8
3,207,072	+				-1.0
3,207,073	-				-2.7
3,207,073	-				-0.5
3,207,073	-				-1.4
3,207,073	-				+0.1
3,207,073	-				-2.4
3,207,075	+				-1.2
3,207,075	+				+0.3
3,207,075	+				-1.5
3,207,076	-				-1.2
3,207,076	-				-3.1
3,207,076	-				-2.3
3,207,096	+				+0.6
3,207,252	+				-1.5
3,207,297	+				-0.5
3,207,297	+				-2.6
3,207,298	-				-0.9
3,207,298	-				-2.5
3,207,298	-				+0.3
3,207,325	-				-1.0
3,207,880	+		Sama_2679	0.41	-2.6
3,207,880	+		Sama_2679	0.41	-1.2
3,207,880	+		Sama_2679	0.41	-0.7
3,207,880	+		Sama_2679	0.41	-2.4
3,207,880	+		Sama_2679	0.41	-0.7
3,207,880	+		Sama_2679	0.41	-2.2
3,207,880	+		Sama_2679	0.41	-2.1
3,207,880	+		Sama_2679	0.41	-2.4
3,207,881	-		Sama_2679	0.41	-2.2
3,207,881	-		Sama_2679	0.41	-2.8
3,207,881	-		Sama_2679	0.41	-1.5
3,207,881	-		Sama_2679	0.41	-1.1
3,207,881	-		Sama_2679	0.41	-1.0
3,207,881	-		Sama_2679	0.41	+0.3
3,207,881	-		Sama_2679	0.41	+0.0
3,207,881	-		Sama_2679	0.41	+0.1
3,207,881	-		Sama_2679	0.41	-1.0
3,207,881	-		Sama_2679	0.41	-1.7
3,207,881	-		Sama_2679	0.41	-0.2
3,207,881	-		Sama_2679	0.41	-0.2
3,207,881	-		Sama_2679	0.41	-2.1
3,207,882	+		Sama_2679	0.41	-2.7
3,207,882	+		Sama_2679	0.41	-1.5
3,207,882	+		Sama_2679	0.41	-1.5
3,207,882	+		Sama_2679	0.41	-1.7
3,207,882	+		Sama_2679	0.41	-2.7
3,207,882	+		Sama_2679	0.41	-0.4
3,207,882	+		Sama_2679	0.41	+0.0
3,207,883	-		Sama_2679	0.41	-0.2
3,207,883	-		Sama_2679	0.41	-2.0
3,207,883	-		Sama_2679	0.41	-1.2
3,207,883	-		Sama_2679	0.41	+0.3
3,207,883	-		Sama_2679	0.41	-1.5
3,207,944	+		Sama_2679	0.44	-2.4
3,207,944	+		Sama_2679	0.44	+1.3
3,207,944	+		Sama_2679	0.44	-1.8
3,207,944	+		Sama_2679	0.44	+0.1
3,207,944	+		Sama_2679	0.44	-1.4
3,207,944	+		Sama_2679	0.44	-2.7
3,207,944	+		Sama_2679	0.44	-3.4
3,207,944	+		Sama_2679	0.44	-1.5
3,207,945	-		Sama_2679	0.44	-0.9
3,207,945	-		Sama_2679	0.44	-2.6
3,207,945	-		Sama_2679	0.44	-0.2
3,207,950	+		Sama_2679	0.45	-0.3
3,207,951	-		Sama_2679	0.45	-1.2
3,208,013	-		Sama_2679	0.48	-2.1
3,208,013	-		Sama_2679	0.48	-1.7
3,208,091	+		Sama_2679	0.52	-1.9
3,208,091	+		Sama_2679	0.52	-0.5
3,208,092	-		Sama_2679	0.53	-2.2
3,208,102	+		Sama_2679	0.53	-2.0
3,208,102	+		Sama_2679	0.53	-2.5
3,208,102	+		Sama_2679	0.53	-3.0
3,208,129	+		Sama_2679	0.55	-1.5