Strain Fitness in Shewanella amazonensis SB2B around Sama_2664

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,189,272	+		Sama_2663	0.73	-2.5
3,189,273	-		Sama_2663	0.73	+0.3
3,189,273	-		Sama_2663	0.73	+0.6
3,189,275	+		Sama_2663	0.73	-0.4
3,189,275	+		Sama_2663	0.73	+0.2
3,189,275	+		Sama_2663	0.73	-1.1
3,189,275	+		Sama_2663	0.73	-1.0
3,189,276	-		Sama_2663	0.73	-0.9
3,189,276	-		Sama_2663	0.73	-1.0
3,189,276	-		Sama_2663	0.73	-1.4
3,189,276	-		Sama_2663	0.73	-1.7
3,189,276	-		Sama_2663	0.73	-0.2
3,189,276	-		Sama_2663	0.73	+0.3
3,189,276	-		Sama_2663	0.73	-0.0
3,189,276	-		Sama_2663	0.73	-0.3
3,189,276	-		Sama_2663	0.73	-1.7
3,189,276	-		Sama_2663	0.73	-0.0
3,189,475	-		Sama_2663	0.80	-0.2
3,189,625	-		Sama_2663	0.86	+0.9
3,189,627	+		Sama_2663	0.86	-0.2
3,189,627	+		Sama_2663	0.86	+0.0
3,189,628	-		Sama_2663	0.86	+2.9
3,189,690	+		Sama_2663	0.88	+0.1
3,189,852	+				-1.1
3,189,853	-				-1.8
3,189,886	-				+1.3
3,190,041	+				-0.4
3,190,041	+				+0.5
3,190,041	+				+0.3
3,190,042	-				+1.3
3,190,042	-				+0.1
3,190,070	+				+1.0
3,190,070	+				+0.3
3,190,070	+				+1.3
3,190,070	+				+0.5
3,190,071	-				-2.2
3,190,073	+				-0.2
3,190,074	-				-0.4
3,190,074	-				-0.5
3,190,089	+				+0.1
3,190,089	+				-1.0
3,190,089	+				+0.3
3,190,089	+				+0.2
3,190,090	-				+0.2
3,190,090	-				-2.7
3,190,090	-				-0.4
3,190,090	-				-0.4
3,190,090	-				+1.3
3,190,090	-				-0.1
3,190,090	-				+1.0
3,190,090	-				-2.0
3,190,090	-				-1.2
3,190,090	-				-0.1
3,190,090	-				-2.8
3,190,090	-				-0.4
3,190,093	+				-0.1
3,190,094	-				-0.9
3,190,094	-				-0.7
3,190,148	+				-0.5
3,190,148	+				+1.6
3,190,148	+				-0.5
3,190,148	+				-0.1
3,190,148	+				-0.7
3,190,149	-				-1.0
3,190,149	-				-0.8
3,190,151	+				+0.3
3,190,151	+				-1.1
3,190,151	+				-0.5
3,190,151	+				+0.3
3,190,151	+				+0.6
3,190,152	-				-0.8
3,190,152	-				-0.5
3,190,152	-				+0.7
3,190,152	-				-0.2
3,190,153	+				+1.0
3,190,154	-				+0.2
3,190,154	-				+0.1
3,190,154	-				+0.5
3,190,154	-				-0.7
3,190,173	-				+0.3
3,190,188	-				-0.2
3,190,190	+				-0.4
3,190,207	-				-0.7
3,190,271	+				+0.5
3,190,357	-		Sama_2664	0.10	-0.5
3,190,357	-		Sama_2664	0.10	+0.3
3,190,372	+		Sama_2664	0.12	+0.3
3,190,372	+		Sama_2664	0.12	-1.7
3,190,372	+		Sama_2664	0.12	+0.7
3,190,372	+		Sama_2664	0.12	+0.6
3,190,372	+		Sama_2664	0.12	+0.1
3,190,373	-		Sama_2664	0.12	-1.7
3,190,373	-		Sama_2664	0.12	-1.3
3,190,373	-		Sama_2664	0.12	-2.7
3,190,395	+		Sama_2664	0.14	-1.0
3,190,396	-		Sama_2664	0.14	-0.6
3,190,401	+		Sama_2664	0.15	-1.0
3,190,402	-		Sama_2664	0.15	-1.8
3,190,413	+		Sama_2664	0.16	-0.3
3,190,413	+		Sama_2664	0.16	-0.7
3,190,413	+		Sama_2664	0.16	+1.1
3,190,413	+		Sama_2664	0.16	-0.5
3,190,413	+		Sama_2664	0.16	-2.1
3,190,414	-		Sama_2664	0.16	+0.0
3,190,414	-		Sama_2664	0.16	-1.0
3,190,493	+		Sama_2664	0.24	-0.2
3,190,494	-		Sama_2664	0.24	+0.6
3,190,494	-		Sama_2664	0.24	+0.3
3,190,543	+		Sama_2664	0.29	-1.0
3,190,634	-		Sama_2664	0.38	-0.3
3,190,650	+		Sama_2664	0.40	-1.0
3,190,650	+		Sama_2664	0.40	-0.5
3,190,650	+		Sama_2664	0.40	-0.0
3,190,650	+		Sama_2664	0.40	-0.7
3,190,651	-		Sama_2664	0.40	-1.2
3,190,651	-		Sama_2664	0.40	+1.3
3,190,657	+		Sama_2664	0.41	-1.1
3,190,658	-		Sama_2664	0.41	-0.7
3,190,658	-		Sama_2664	0.41	-1.2
3,190,659	+		Sama_2664	0.41	-2.0
3,190,659	+		Sama_2664	0.41	+0.3
3,190,659	+		Sama_2664	0.41	-2.5
3,190,660	-		Sama_2664	0.41	+0.3
3,190,807	+		Sama_2664	0.56	-0.8
3,190,807	+		Sama_2664	0.56	-0.4
3,190,808	-		Sama_2664	0.56	-0.4
3,190,864	+		Sama_2664	0.62	-2.0
3,190,864	+		Sama_2664	0.62	-3.1
3,190,864	+		Sama_2664	0.62	-1.5
3,190,864	+		Sama_2664	0.62	-0.7
3,190,864	+		Sama_2664	0.62	-1.7
3,190,864	+		Sama_2664	0.62	-2.7
3,190,864	+		Sama_2664	0.62	+0.6
3,190,864	+		Sama_2664	0.62	-0.1
3,190,864	+		Sama_2664	0.62	+0.7
3,190,864	+		Sama_2664	0.62	-1.8
3,190,864	+		Sama_2664	0.62	-1.4
3,190,864	+		Sama_2664	0.62	+0.1
3,190,865	-		Sama_2664	0.62	-0.4
3,190,865	-		Sama_2664	0.62	-0.8
3,190,865	-		Sama_2664	0.62	-1.0
3,190,865	-		Sama_2664	0.62	-0.2
3,190,865	-		Sama_2664	0.62	+0.4
3,190,865	-		Sama_2664	0.62	+1.8
3,190,865	-		Sama_2664	0.62	-1.3
3,190,865	-		Sama_2664	0.62	+0.1
3,190,865	-		Sama_2664	0.62	+0.3
3,190,865	-		Sama_2664	0.62	+0.0
3,190,865	-		Sama_2664	0.62	-1.4
3,190,865	-		Sama_2664	0.62	+0.4
3,190,865	-		Sama_2664	0.62	-2.6
3,190,865	-		Sama_2664	0.62	-1.2
3,190,901	-		Sama_2664	0.66	-0.5
3,190,903	+		Sama_2664	0.66	-1.0
3,190,903	+		Sama_2664	0.66	-2.4
3,190,903	+		Sama_2664	0.66	-1.0
3,190,908	+		Sama_2664	0.66	+0.9
3,190,930	+		Sama_2664	0.69	-0.2
3,190,931	-		Sama_2664	0.69	-0.5
3,190,931	-		Sama_2664	0.69	+0.8
3,190,931	-		Sama_2664	0.69	+1.8
3,190,936	+		Sama_2664	0.69	-0.9
3,190,936	+		Sama_2664	0.69	-0.2
3,190,936	+		Sama_2664	0.69	+1.0
3,190,936	+		Sama_2664	0.69	-1.7
3,190,936	+		Sama_2664	0.69	+0.0
3,190,937	-		Sama_2664	0.69	-0.7
3,190,937	-		Sama_2664	0.69	-1.7
3,190,937	-		Sama_2664	0.69	-1.0
3,190,937	-		Sama_2664	0.69	-0.7
3,190,937	-		Sama_2664	0.69	+0.1
3,190,937	-		Sama_2664	0.69	-1.7
3,190,937	-		Sama_2664	0.69	-1.6
3,190,937	-		Sama_2664	0.69	+0.2
3,190,937	-		Sama_2664	0.69	-1.5
3,190,937	-		Sama_2664	0.69	+0.1
3,190,937	-		Sama_2664	0.69	-0.4
3,190,940	-		Sama_2664	0.70	-0.2
3,190,940	-		Sama_2664	0.70	-0.0
3,190,940	-		Sama_2664	0.70	-1.9
3,190,940	-		Sama_2664	0.70	-1.1
3,190,940	-		Sama_2664	0.70	-0.5
3,191,167	+				-1.2
3,191,168	-				-1.2
3,191,168	-				+0.2
3,191,168	-				+0.2
3,191,168	-				-0.4
3,191,269	+				-0.0
3,191,269	+				+0.9
3,191,269	+				-0.4
3,191,270	-				+1.8
3,191,270	-				+0.2
3,191,277	+				+0.9
3,191,278	-				+0.9
3,191,278	-				+0.0
3,191,278	-				-0.8
3,191,278	-				+0.9
3,191,355	+		Sama_2665	0.11	+0.2
3,191,355	+		Sama_2665	0.11	+2.0
3,191,412	-		Sama_2665	0.17	+0.1
3,191,456	-		Sama_2665	0.22	+0.1
3,191,478	-		Sama_2665	0.25	-0.4
3,191,503	-		Sama_2665	0.27	-0.4
3,191,532	+		Sama_2665	0.31	+0.3
3,191,533	-		Sama_2665	0.31	-0.5
3,191,539	+		Sama_2665	0.31	-0.3
3,191,539	+		Sama_2665	0.31	-0.3
3,191,539	+		Sama_2665	0.31	-0.6
3,191,539	+		Sama_2665	0.31	+0.3
3,191,539	+		Sama_2665	0.31	-1.7
3,191,540	-		Sama_2665	0.31	+0.6
3,191,540	-		Sama_2665	0.31	+0.3
3,191,540	-		Sama_2665	0.31	+0.8
3,191,540	-		Sama_2665	0.31	+0.3
3,191,546	+		Sama_2665	0.32	-0.9
3,191,546	+		Sama_2665	0.32	+0.2
3,191,547	-		Sama_2665	0.32	-0.4
3,191,630	+		Sama_2665	0.41	-0.7
3,191,630	+		Sama_2665	0.41	-0.0
3,191,630	+		Sama_2665	0.41	+0.6
3,191,631	-		Sama_2665	0.42	+0.3
3,191,631	-		Sama_2665	0.42	+1.2
3,191,641	+		Sama_2665	0.43	-0.8
3,191,682	-		Sama_2665	0.47	-0.9
3,191,682	-		Sama_2665	0.47	-0.5
3,191,682	-		Sama_2665	0.47	+0.2
3,191,699	-		Sama_2665	0.49	-0.5
3,191,699	-		Sama_2665	0.49	-0.5
3,191,699	-		Sama_2665	0.49	+0.7
3,191,716	+		Sama_2665	0.51	-1.2
3,191,717	-		Sama_2665	0.51	+1.2
3,191,720	+		Sama_2665	0.51	+0.6
3,191,720	+		Sama_2665	0.51	+0.1
3,191,720	+		Sama_2665	0.51	+0.8
3,191,720	+		Sama_2665	0.51	+2.2
3,191,720	+		Sama_2665	0.51	-0.2
3,191,720	+		Sama_2665	0.51	+0.3
3,191,720	+		Sama_2665	0.51	-1.1
3,191,721	-		Sama_2665	0.51	+0.9
3,191,721	-		Sama_2665	0.51	-0.3
3,191,721	-		Sama_2665	0.51	+0.0
3,191,721	-		Sama_2665	0.51	-2.7
3,191,721	-		Sama_2665	0.51	-0.9
3,191,721	-		Sama_2665	0.51	-0.7
3,191,721	-		Sama_2665	0.51	-0.4
3,191,721	-		Sama_2665	0.51	-2.7
3,191,721	-		Sama_2665	0.51	-0.2
3,191,723	+		Sama_2665	0.52	-0.1
3,191,723	+		Sama_2665	0.52	-1.3
3,191,724	-		Sama_2665	0.52	-0.3
3,191,726	+		Sama_2665	0.52	-1.8
3,191,726	+		Sama_2665	0.52	+1.1
3,191,727	-		Sama_2665	0.52	+0.8
3,191,727	-		Sama_2665	0.52	-0.6
3,191,727	-		Sama_2665	0.52	-0.4
3,191,727	-		Sama_2665	0.52	+0.2
3,191,727	-		Sama_2665	0.52	-0.4
3,191,733	-		Sama_2665	0.53	+0.7
3,191,816	+		Sama_2665	0.62	+0.4
3,191,816	+		Sama_2665	0.62	-1.1
3,191,816	+		Sama_2665	0.62	+0.5
3,191,817	-		Sama_2665	0.62	-2.5
3,191,817	-		Sama_2665	0.62	-1.0
3,191,817	-		Sama_2665	0.62	-1.2
3,191,817	-		Sama_2665	0.62	+0.3
3,191,817	-		Sama_2665	0.62	-1.0
3,191,888	+		Sama_2665	0.70	-0.4
3,191,888	+		Sama_2665	0.70	+0.3
3,191,888	+		Sama_2665	0.70	-0.5
3,191,888	+		Sama_2665	0.70	-0.2
3,191,888	+		Sama_2665	0.70	-0.8
3,191,888	+		Sama_2665	0.70	+0.8
3,191,888	+		Sama_2665	0.70	+0.1
3,191,888	+		Sama_2665	0.70	+0.2
3,191,888	+		Sama_2665	0.70	-1.2
3,191,888	+		Sama_2665	0.70	-2.0
3,191,888	+		Sama_2665	0.70	-0.1
3,191,888	+		Sama_2665	0.70	+1.7
3,191,888	+		Sama_2665	0.70	-0.8
3,191,889	-		Sama_2665	0.70	+0.7
3,191,889	-		Sama_2665	0.70	-0.0
3,191,889	-		Sama_2665	0.70	-1.2
3,191,889	-		Sama_2665	0.70	-1.4
3,191,889	-		Sama_2665	0.70	-1.0
3,191,889	-		Sama_2665	0.70	-1.3
3,191,889	-		Sama_2665	0.70	-0.8
3,191,889	-		Sama_2665	0.70	-0.8
3,191,889	-		Sama_2665	0.70	-1.0
3,191,889	-		Sama_2665	0.70	+1.1
3,191,889	-		Sama_2665	0.70	-1.3
3,191,889	-		Sama_2665	0.70	-0.8
3,191,889	-		Sama_2665	0.70	+0.0
3,191,889	-		Sama_2665	0.70	-0.1
3,191,889	-		Sama_2665	0.70	-0.9
3,191,906	-		Sama_2665	0.72	-0.4
3,191,952	+		Sama_2665	0.77	+1.1
3,191,952	+		Sama_2665	0.77	-0.1
3,191,952	+		Sama_2665	0.77	-1.7
3,191,952	+		Sama_2665	0.77	-0.3
3,191,952	+		Sama_2665	0.77	-2.5
3,191,952	+		Sama_2665	0.77	+0.5
3,191,953	-		Sama_2665	0.77	-0.7
3,191,953	+		Sama_2665	0.77	+0.8
3,191,953	-		Sama_2665	0.77	-0.4
3,191,953	-		Sama_2665	0.77	+0.0
3,191,953	-		Sama_2665	0.77	+0.5
3,191,953	-		Sama_2665	0.77	+0.4
3,191,953	-		Sama_2665	0.77	+0.3
3,191,956	+		Sama_2665	0.78	+0.9
3,191,956	+		Sama_2665	0.78	+0.2
3,191,956	+		Sama_2665	0.78	+0.1
3,191,956	+		Sama_2665	0.78	-1.1
3,191,956	+		Sama_2665	0.78	-0.2
3,191,956	+		Sama_2665	0.78	-0.4
3,191,956	+		Sama_2665	0.78	+0.0
3,191,957	-		Sama_2665	0.78	+2.1
3,191,957	-		Sama_2665	0.78	-0.7
3,192,017	-		Sama_2665	0.84	+0.6
3,192,017	-		Sama_2665	0.84	+0.3
3,192,019	+		Sama_2665	0.84	-0.3
3,192,019	+		Sama_2665	0.84	+0.3
3,192,019	+		Sama_2665	0.84	-0.1
3,192,019	+		Sama_2665	0.84	+0.7
3,192,019	+		Sama_2665	0.84	-0.2
3,192,020	-		Sama_2665	0.85	-0.1
3,192,051	-		Sama_2665	0.88	-0.8
3,192,051	-		Sama_2665	0.88	+2.1
3,192,053	-		Sama_2665	0.88	+0.0
3,192,083	+				+1.3
3,192,083	+				+0.5
3,192,083	+				-0.2
3,192,083	+				-0.8
3,192,083	+				+0.5
3,192,083	+				-0.7
3,192,084	-				-0.1
3,192,084	-				+0.1
3,192,084	-				+0.0
3,192,084	-				-0.4
3,192,103	+				-1.2
3,192,119	+				+0.0
3,192,120	-				-2.1
3,192,120	-				+0.6
3,192,156	+				+0.9
3,192,157	-				+1.0
3,192,157	-				+0.0
3,192,157	-				+0.6