Strain Fitness in Shewanella amazonensis SB2B around Sama_2571

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,077,201	+				+2.9
3,077,202	-				+0.1
3,077,312	-				-0.1
3,077,378	+				-0.1
3,077,379	-				+0.8
3,077,382	+				+0.9
3,077,382	+				+0.6
3,077,419	-				-0.2
3,077,419	-				+0.3
3,077,419	-				+0.0
3,077,419	-				-0.3
3,077,419	-				+0.3
3,077,423	-				+0.5
3,077,423	-				+1.2
3,077,423	-				-0.4
3,077,423	-				-0.3
3,077,423	-				+0.0
3,077,423	-				+0.2
3,077,423	-				+2.2
3,077,423	-				+0.4
3,077,423	-				+0.9
3,077,423	-				-0.5
3,077,423	-				+1.9
3,077,437	-		Sama_R0101	0.17	-0.6
3,077,437	-		Sama_R0101	0.17	-0.1
3,077,450	-		Sama_R0101	0.35	-0.0
3,077,450	-		Sama_R0101	0.35	+0.5
3,077,450	-		Sama_R0101	0.35	+0.4
3,077,450	-		Sama_R0101	0.35	+0.0
3,077,450	-		Sama_R0101	0.35	-0.9
3,077,450	-		Sama_R0101	0.35	+0.3
3,077,454	-		Sama_R0101	0.40	-1.8
3,077,542	-				-1.0
3,077,542	-				-0.6
3,077,542	-				+0.5
3,077,547	-				-0.5
3,077,547	-				+1.7
3,077,551	-		Sama_R0102	0.10	+1.8
3,077,551	-		Sama_R0102	0.10	+1.2
3,077,583	-		Sama_R0102	0.52	-0.1
3,077,651	-		Sama_R0103	0.40	+0.2
3,078,124	-				+0.9
3,078,161	+				+1.0
3,078,161	+				-0.0
3,078,162	-				+0.1
3,078,162	-				+0.0
3,078,162	-				-0.7
3,078,199	-				+0.7
3,078,236	-				+0.1
3,078,243	+				-1.0
3,078,244	-				-1.0
3,078,244	-				-0.8
3,078,244	-				-1.2
3,078,251	-				+1.3
3,078,319	-		Sama_2571	0.11	-1.2
3,078,444	+		Sama_2571	0.23	-0.7
3,078,541	-		Sama_2571	0.32	-1.5
3,078,581	+		Sama_2571	0.35	+1.3
3,078,581	+		Sama_2571	0.35	-1.5
3,078,582	-		Sama_2571	0.35	-1.6
3,078,582	-		Sama_2571	0.35	-1.1
3,078,582	-		Sama_2571	0.35	-1.7
3,078,582	-		Sama_2571	0.35	+1.3
3,078,582	-		Sama_2571	0.35	-0.7
3,078,582	-		Sama_2571	0.35	-0.7
3,078,591	-		Sama_2571	0.36	-3.0
3,078,624	-		Sama_2571	0.39	+1.3
3,078,678	+		Sama_2571	0.44	-0.1
3,078,678	+		Sama_2571	0.44	-2.0
3,078,678	+		Sama_2571	0.44	+0.3
3,078,678	+		Sama_2571	0.44	-2.2
3,078,678	+		Sama_2571	0.44	-1.5
3,078,678	+		Sama_2571	0.44	-0.7
3,078,678	+		Sama_2571	0.44	-0.8
3,078,678	+		Sama_2571	0.44	+0.0
3,078,678	+		Sama_2571	0.44	-1.8
3,078,678	+		Sama_2571	0.44	-1.4
3,078,678	+		Sama_2571	0.44	-2.4
3,078,678	+		Sama_2571	0.44	-1.0
3,078,678	+		Sama_2571	0.44	-2.0
3,078,678	+		Sama_2571	0.44	-0.2
3,078,678	+		Sama_2571	0.44	+0.3
3,078,678	+		Sama_2571	0.44	-0.7
3,078,678	+		Sama_2571	0.44	-3.2
3,078,679	-		Sama_2571	0.44	-0.5
3,078,679	-		Sama_2571	0.44	-1.7
3,078,679	-		Sama_2571	0.44	-0.5
3,078,679	-		Sama_2571	0.44	-1.7
3,078,679	-		Sama_2571	0.44	-0.7
3,078,679	-		Sama_2571	0.44	-0.7
3,078,679	-		Sama_2571	0.44	+1.3
3,078,679	-		Sama_2571	0.44	-1.2
3,078,679	-		Sama_2571	0.44	-0.2
3,078,679	-		Sama_2571	0.44	-0.2
3,078,679	-		Sama_2571	0.44	-1.0
3,078,679	-		Sama_2571	0.44	-0.5
3,078,679	-		Sama_2571	0.44	-2.0
3,078,679	-		Sama_2571	0.44	-1.5
3,078,679	-		Sama_2571	0.44	-1.0
3,078,679	-		Sama_2571	0.44	-3.2
3,078,679	-		Sama_2571	0.44	-1.0
3,078,679	-		Sama_2571	0.44	-2.0
3,078,679	-		Sama_2571	0.44	-1.0
3,078,679	-		Sama_2571	0.44	-1.7
3,078,679	-		Sama_2571	0.44	-2.0
3,078,679	-		Sama_2571	0.44	-1.0
3,078,679	-		Sama_2571	0.44	-2.5
3,078,679	-		Sama_2571	0.44	-3.0
3,078,711	+		Sama_2571	0.47	-0.7
3,078,711	+		Sama_2571	0.47	-1.5
3,078,711	+		Sama_2571	0.47	-0.2
3,078,712	-		Sama_2571	0.47	-0.7
3,078,712	-		Sama_2571	0.47	-1.7
3,078,712	-		Sama_2571	0.47	-2.0
3,078,859	+		Sama_2571	0.61	-2.1
3,078,859	+		Sama_2571	0.61	-2.6
3,078,859	+		Sama_2571	0.61	-1.1
3,078,859	+		Sama_2571	0.61	+0.8
3,078,860	-		Sama_2571	0.61	-1.2
3,078,860	-		Sama_2571	0.61	-0.1
3,078,860	-		Sama_2571	0.61	-2.0
3,078,860	-		Sama_2571	0.61	-0.7
3,078,860	-		Sama_2571	0.61	-1.3
3,078,909	+		Sama_2571	0.65	-1.6
3,078,914	+		Sama_2571	0.66	-1.5
3,078,914	+		Sama_2571	0.66	+0.0
3,078,914	+		Sama_2571	0.66	-1.0
3,078,914	+		Sama_2571	0.66	+0.0
3,078,915	-		Sama_2571	0.66	-1.0
3,078,915	-		Sama_2571	0.66	-1.1
3,078,915	-		Sama_2571	0.66	-1.8
3,078,915	-		Sama_2571	0.66	-2.1
3,078,915	-		Sama_2571	0.66	-2.5
3,078,915	-		Sama_2571	0.66	-0.7
3,078,915	-		Sama_2571	0.66	-0.7
3,079,114	+		Sama_2571	0.84	-1.0
3,079,115	-		Sama_2571	0.84	-2.1
3,079,115	-		Sama_2571	0.84	-1.4
3,079,184	-				-0.7
3,079,184	-				-3.0
3,079,246	+				-1.0
3,079,247	-				-1.2
3,079,280	-				-2.6
3,079,280	-				-1.1
3,079,280	-				-0.9
3,079,280	-				-1.0
3,079,289	-				-2.8
3,079,292	+				-1.8
3,079,292	+				-2.5
3,079,292	+				-0.5
3,079,292	+				-1.2
3,079,292	+				+0.0
3,079,292	+				-1.5
3,079,292	+				-0.8
3,079,292	+				-2.0
3,079,293	-				-0.8
3,079,293	-				-1.5
3,079,293	-				-1.1
3,079,293	-				+0.3
3,079,293	-				-0.5
3,079,293	-				-0.7
3,079,293	-				-1.5
3,079,293	-				+2.3
3,079,293	-				-1.4
3,079,293	-				-0.5
3,079,293	-				-1.5
3,079,293	-				-0.2
3,079,293	-				-0.5
3,079,293	-				-0.4
3,079,293	-				-2.7
3,079,302	+				-0.7
3,079,311	+				+0.5
3,079,312	-				-0.7
3,079,312	-				-2.2
3,079,312	-				-1.5
3,079,312	-				+1.9
3,079,312	-				-0.8
3,079,319	+				-2.4
3,079,319	+				-0.5
3,079,320	-				+0.7
3,079,320	-				+0.5
3,079,320	-				-0.5
3,079,991	+				-1.0
3,079,991	+				+0.8
3,080,018	+				-0.5
3,080,019	-				+0.8
3,080,031	+				-1.1
3,080,031	+				-0.1
3,080,032	-				-1.0
3,080,032	-				+0.6
3,080,032	-				-2.4
3,080,057	+				+0.3
3,080,083	+				+0.3
3,080,083	+				-1.5
3,080,123	-				-0.6
3,080,123	-				-0.2
3,080,123	-				-0.0
3,080,123	-				+0.3
3,080,125	+				+0.0
3,080,125	+				-0.0
3,080,125	-				-0.2
3,080,125	+				+0.3
3,080,126	-				+0.2
3,080,126	-				-0.8
3,080,126	-				-0.4
3,080,126	-				+0.3
3,080,126	-				-0.3
3,080,126	-				+0.2
3,080,143	+				+0.1
3,080,143	+				-0.5
3,080,143	+				+2.3
3,080,143	+				+0.9
3,080,144	-				+1.3
3,080,144	-				+0.5