Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2562 and Sama_2563 are separated by 48 nucleotides Sama_2563 and Sama_2564 overlap by 4 nucleotides Sama_2564 and Sama_2565 are separated by 121 nucleotides Sama_2565 and prfA are separated by 3 nucleotides
Sama_2562: Sama_2562 - hypothetical protein (RefSeq), at 3,068,495 to 3,069,733
_2562
Sama_2563: Sama_2563 - hypothetical protein (RefSeq), at 3,069,782 to 3,070,570
_2563
Sama_2564: Sama_2564 - hypothetical protein (RefSeq), at 3,070,567 to 3,070,965
_2564
Sama_2565: Sama_2565 - hemK family protein (RefSeq), at 3,071,087 to 3,071,944
_2565
Sama_2566: prfA - peptide chain release factor 1 (RefSeq), at 3,071,948 to 3,073,039
prfA
Position (kb)
3070
3071 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3069.572 kb on - strand, within Sama_2562 at 3069.572 kb on - strand, within Sama_2562 at 3069.595 kb on - strand, within Sama_2562 at 3069.595 kb on - strand, within Sama_2562 at 3069.658 kb on - strand at 3069.676 kb on + strand at 3069.677 kb on - strand at 3069.696 kb on - strand at 3069.757 kb on - strand at 3069.768 kb on - strand at 3069.774 kb on + strand at 3069.775 kb on - strand at 3069.976 kb on + strand, within Sama_2563 at 3069.976 kb on + strand, within Sama_2563 at 3069.976 kb on + strand, within Sama_2563 at 3069.976 kb on + strand, within Sama_2563 at 3069.977 kb on - strand, within Sama_2563 at 3069.977 kb on - strand, within Sama_2563 at 3070.013 kb on + strand, within Sama_2563 at 3070.014 kb on - strand, within Sama_2563 at 3070.014 kb on - strand, within Sama_2563 at 3070.014 kb on - strand, within Sama_2563 at 3070.017 kb on - strand, within Sama_2563 at 3070.017 kb on - strand, within Sama_2563 at 3070.083 kb on + strand, within Sama_2563 at 3070.083 kb on + strand, within Sama_2563 at 3070.084 kb on - strand, within Sama_2563 at 3070.217 kb on - strand, within Sama_2563 at 3070.217 kb on - strand, within Sama_2563 at 3070.277 kb on + strand, within Sama_2563 at 3070.353 kb on + strand, within Sama_2563 at 3070.354 kb on - strand, within Sama_2563 at 3070.354 kb on - strand, within Sama_2563 at 3070.514 kb on + strand at 3070.514 kb on + strand at 3070.514 kb on + strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.515 kb on - strand at 3070.516 kb on + strand at 3070.517 kb on - strand at 3070.551 kb on - strand at 3070.551 kb on - strand at 3070.551 kb on - strand at 3070.551 kb on - strand at 3070.582 kb on + strand at 3070.583 kb on - strand at 3070.616 kb on + strand, within Sama_2564 at 3070.617 kb on - strand, within Sama_2564 at 3070.706 kb on + strand, within Sama_2564 at 3070.706 kb on + strand, within Sama_2564 at 3070.758 kb on - strand, within Sama_2564 at 3070.806 kb on + strand, within Sama_2564 at 3070.806 kb on + strand, within Sama_2564 at 3070.806 kb on + strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.807 kb on - strand, within Sama_2564 at 3070.810 kb on + strand, within Sama_2564 at 3070.810 kb on + strand, within Sama_2564 at 3070.810 kb on + strand, within Sama_2564 at 3070.810 kb on + strand, within Sama_2564 at 3070.810 kb on + strand, within Sama_2564 at 3070.810 kb on + strand, within Sama_2564 at 3070.811 kb on - strand, within Sama_2564 at 3070.811 kb on - strand, within Sama_2564 at 3070.811 kb on - strand, within Sama_2564 at 3070.811 kb on - strand, within Sama_2564 at 3070.933 kb on - strand at 3070.983 kb on + strand at 3071.000 kb on + strand at 3071.000 kb on + strand at 3071.152 kb on + strand at 3071.152 kb on + strand at 3071.522 kb on - strand, within Sama_2565 at 3071.925 kb on - strand at 3071.925 kb on - strand at 3071.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 3,069,572 - Sama_2562 0.87 +0.3 3,069,572 - Sama_2562 0.87 -1.2 3,069,595 - Sama_2562 0.89 +0.3 3,069,595 - Sama_2562 0.89 -1.5 3,069,658 - +0.3 3,069,676 + -1.5 3,069,677 - -0.0 3,069,696 - -0.1 3,069,757 - +1.6 3,069,768 - -0.5 3,069,774 + -0.6 3,069,775 - +0.8 3,069,976 + Sama_2563 0.25 -0.6 3,069,976 + Sama_2563 0.25 -0.7 3,069,976 + Sama_2563 0.25 +0.6 3,069,976 + Sama_2563 0.25 -0.5 3,069,977 - Sama_2563 0.25 -1.5 3,069,977 - Sama_2563 0.25 -2.4 3,070,013 + Sama_2563 0.29 -1.0 3,070,014 - Sama_2563 0.29 -0.1 3,070,014 - Sama_2563 0.29 -1.7 3,070,014 - Sama_2563 0.29 +0.1 3,070,017 - Sama_2563 0.30 -1.2 3,070,017 - Sama_2563 0.30 -1.7 3,070,083 + Sama_2563 0.38 -0.4 3,070,083 + Sama_2563 0.38 -0.5 3,070,084 - Sama_2563 0.38 +2.1 3,070,217 - Sama_2563 0.55 -2.1 3,070,217 - Sama_2563 0.55 +1.7 3,070,277 + Sama_2563 0.63 -1.2 3,070,353 + Sama_2563 0.72 +0.7 3,070,354 - Sama_2563 0.72 -0.7 3,070,354 - Sama_2563 0.72 -2.5 3,070,514 + -0.3 3,070,514 + -2.9 3,070,514 + -0.5 3,070,515 - -1.0 3,070,515 - -0.7 3,070,515 - -0.9 3,070,515 - -0.4 3,070,515 - -2.2 3,070,515 - +1.2 3,070,515 - -0.3 3,070,515 - +0.6 3,070,515 - +0.3 3,070,515 - -2.1 3,070,516 + -0.9 3,070,517 - -3.6 3,070,551 - -0.5 3,070,551 - +1.6 3,070,551 - +1.8 3,070,551 - -2.7 3,070,582 + -0.9 3,070,583 - -1.1 3,070,616 + Sama_2564 0.12 -0.4 3,070,617 - Sama_2564 0.13 -1.7 3,070,706 + Sama_2564 0.35 -0.5 3,070,706 + Sama_2564 0.35 -0.8 3,070,758 - Sama_2564 0.48 +0.9 3,070,806 + Sama_2564 0.60 -1.7 3,070,806 + Sama_2564 0.60 +1.1 3,070,806 + Sama_2564 0.60 -0.7 3,070,807 - Sama_2564 0.60 +0.5 3,070,807 - Sama_2564 0.60 -0.7 3,070,807 - Sama_2564 0.60 -1.2 3,070,807 - Sama_2564 0.60 -0.2 3,070,807 - Sama_2564 0.60 -0.0 3,070,807 - Sama_2564 0.60 -2.4 3,070,807 - Sama_2564 0.60 -0.5 3,070,807 - Sama_2564 0.60 -1.7 3,070,810 + Sama_2564 0.61 -2.1 3,070,810 + Sama_2564 0.61 -2.5 3,070,810 + Sama_2564 0.61 -1.5 3,070,810 + Sama_2564 0.61 -1.6 3,070,810 + Sama_2564 0.61 -0.8 3,070,810 + Sama_2564 0.61 -3.0 3,070,811 - Sama_2564 0.61 +1.9 3,070,811 - Sama_2564 0.61 -2.0 3,070,811 - Sama_2564 0.61 +0.8 3,070,811 - Sama_2564 0.61 -0.4 3,070,933 - -1.5 3,070,983 + +0.3 3,071,000 + -1.2 3,071,000 + +0.5 3,071,152 + +0.1 3,071,152 + -0.2 3,071,522 - Sama_2565 0.51 +0.8 3,071,925 - -1.8 3,071,925 - -1.8 3,071,927 - -1.5
Or see this region's nucleotide sequence