Strain Fitness in Shewanella amazonensis SB2B around Sama_2564

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2562 and Sama_2563 are separated by 48 nucleotidesSama_2563 and Sama_2564 overlap by 4 nucleotidesSama_2564 and Sama_2565 are separated by 121 nucleotidesSama_2565 and prfA are separated by 3 nucleotides Sama_2562: Sama_2562 - hypothetical protein (RefSeq), at 3,068,495 to 3,069,733 _2562 Sama_2563: Sama_2563 - hypothetical protein (RefSeq), at 3,069,782 to 3,070,570 _2563 Sama_2564: Sama_2564 - hypothetical protein (RefSeq), at 3,070,567 to 3,070,965 _2564 Sama_2565: Sama_2565 - hemK family protein (RefSeq), at 3,071,087 to 3,071,944 _2565 Sama_2566: prfA - peptide chain release factor 1 (RefSeq), at 3,071,948 to 3,073,039 prfA Position (kb) 3070 3071Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3069.572 kb on - strand, within Sama_2562at 3069.572 kb on - strand, within Sama_2562at 3069.595 kb on - strand, within Sama_2562at 3069.595 kb on - strand, within Sama_2562at 3069.658 kb on - strandat 3069.676 kb on + strandat 3069.677 kb on - strandat 3069.696 kb on - strandat 3069.757 kb on - strandat 3069.768 kb on - strandat 3069.774 kb on + strandat 3069.775 kb on - strandat 3069.976 kb on + strand, within Sama_2563at 3069.976 kb on + strand, within Sama_2563at 3069.976 kb on + strand, within Sama_2563at 3069.976 kb on + strand, within Sama_2563at 3069.977 kb on - strand, within Sama_2563at 3069.977 kb on - strand, within Sama_2563at 3070.013 kb on + strand, within Sama_2563at 3070.014 kb on - strand, within Sama_2563at 3070.014 kb on - strand, within Sama_2563at 3070.014 kb on - strand, within Sama_2563at 3070.017 kb on - strand, within Sama_2563at 3070.017 kb on - strand, within Sama_2563at 3070.083 kb on + strand, within Sama_2563at 3070.083 kb on + strand, within Sama_2563at 3070.084 kb on - strand, within Sama_2563at 3070.217 kb on - strand, within Sama_2563at 3070.217 kb on - strand, within Sama_2563at 3070.277 kb on + strand, within Sama_2563at 3070.353 kb on + strand, within Sama_2563at 3070.354 kb on - strand, within Sama_2563at 3070.354 kb on - strand, within Sama_2563at 3070.514 kb on + strandat 3070.514 kb on + strandat 3070.514 kb on + strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.515 kb on - strandat 3070.516 kb on + strandat 3070.517 kb on - strandat 3070.551 kb on - strandat 3070.551 kb on - strandat 3070.551 kb on - strandat 3070.551 kb on - strandat 3070.582 kb on + strandat 3070.583 kb on - strandat 3070.616 kb on + strand, within Sama_2564at 3070.617 kb on - strand, within Sama_2564at 3070.706 kb on + strand, within Sama_2564at 3070.706 kb on + strand, within Sama_2564at 3070.758 kb on - strand, within Sama_2564at 3070.806 kb on + strand, within Sama_2564at 3070.806 kb on + strand, within Sama_2564at 3070.806 kb on + strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.807 kb on - strand, within Sama_2564at 3070.810 kb on + strand, within Sama_2564at 3070.810 kb on + strand, within Sama_2564at 3070.810 kb on + strand, within Sama_2564at 3070.810 kb on + strand, within Sama_2564at 3070.810 kb on + strand, within Sama_2564at 3070.810 kb on + strand, within Sama_2564at 3070.811 kb on - strand, within Sama_2564at 3070.811 kb on - strand, within Sama_2564at 3070.811 kb on - strand, within Sama_2564at 3070.811 kb on - strand, within Sama_2564at 3070.933 kb on - strandat 3070.983 kb on + strandat 3071.000 kb on + strandat 3071.000 kb on + strandat 3071.152 kb on + strandat 3071.152 kb on + strandat 3071.522 kb on - strand, within Sama_2565at 3071.925 kb on - strandat 3071.925 kb on - strandat 3071.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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3,069,572 - Sama_2562 0.87 +0.3
3,069,572 - Sama_2562 0.87 -1.2
3,069,595 - Sama_2562 0.89 +0.3
3,069,595 - Sama_2562 0.89 -1.5
3,069,658 - +0.3
3,069,676 + -1.5
3,069,677 - -0.0
3,069,696 - -0.1
3,069,757 - +1.6
3,069,768 - -0.5
3,069,774 + -0.6
3,069,775 - +0.8
3,069,976 + Sama_2563 0.25 -0.6
3,069,976 + Sama_2563 0.25 -0.7
3,069,976 + Sama_2563 0.25 +0.6
3,069,976 + Sama_2563 0.25 -0.5
3,069,977 - Sama_2563 0.25 -1.5
3,069,977 - Sama_2563 0.25 -2.4
3,070,013 + Sama_2563 0.29 -1.0
3,070,014 - Sama_2563 0.29 -0.1
3,070,014 - Sama_2563 0.29 -1.7
3,070,014 - Sama_2563 0.29 +0.1
3,070,017 - Sama_2563 0.30 -1.2
3,070,017 - Sama_2563 0.30 -1.7
3,070,083 + Sama_2563 0.38 -0.4
3,070,083 + Sama_2563 0.38 -0.5
3,070,084 - Sama_2563 0.38 +2.1
3,070,217 - Sama_2563 0.55 -2.1
3,070,217 - Sama_2563 0.55 +1.7
3,070,277 + Sama_2563 0.63 -1.2
3,070,353 + Sama_2563 0.72 +0.7
3,070,354 - Sama_2563 0.72 -0.7
3,070,354 - Sama_2563 0.72 -2.5
3,070,514 + -0.3
3,070,514 + -2.9
3,070,514 + -0.5
3,070,515 - -1.0
3,070,515 - -0.7
3,070,515 - -0.9
3,070,515 - -0.4
3,070,515 - -2.2
3,070,515 - +1.2
3,070,515 - -0.3
3,070,515 - +0.6
3,070,515 - +0.3
3,070,515 - -2.1
3,070,516 + -0.9
3,070,517 - -3.6
3,070,551 - -0.5
3,070,551 - +1.6
3,070,551 - +1.8
3,070,551 - -2.7
3,070,582 + -0.9
3,070,583 - -1.1
3,070,616 + Sama_2564 0.12 -0.4
3,070,617 - Sama_2564 0.13 -1.7
3,070,706 + Sama_2564 0.35 -0.5
3,070,706 + Sama_2564 0.35 -0.8
3,070,758 - Sama_2564 0.48 +0.9
3,070,806 + Sama_2564 0.60 -1.7
3,070,806 + Sama_2564 0.60 +1.1
3,070,806 + Sama_2564 0.60 -0.7
3,070,807 - Sama_2564 0.60 +0.5
3,070,807 - Sama_2564 0.60 -0.7
3,070,807 - Sama_2564 0.60 -1.2
3,070,807 - Sama_2564 0.60 -0.2
3,070,807 - Sama_2564 0.60 -0.0
3,070,807 - Sama_2564 0.60 -2.4
3,070,807 - Sama_2564 0.60 -0.5
3,070,807 - Sama_2564 0.60 -1.7
3,070,810 + Sama_2564 0.61 -2.1
3,070,810 + Sama_2564 0.61 -2.5
3,070,810 + Sama_2564 0.61 -1.5
3,070,810 + Sama_2564 0.61 -1.6
3,070,810 + Sama_2564 0.61 -0.8
3,070,810 + Sama_2564 0.61 -3.0
3,070,811 - Sama_2564 0.61 +1.9
3,070,811 - Sama_2564 0.61 -2.0
3,070,811 - Sama_2564 0.61 +0.8
3,070,811 - Sama_2564 0.61 -0.4
3,070,933 - -1.5
3,070,983 + +0.3
3,071,000 + -1.2
3,071,000 + +0.5
3,071,152 + +0.1
3,071,152 + -0.2
3,071,522 - Sama_2565 0.51 +0.8
3,071,925 - -1.8
3,071,925 - -1.8
3,071,927 - -1.5

Or see this region's nucleotide sequence